Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils

Autores
Shin, Seunggwan; Clarke, Dave J.; Lemmon, Alan R.; Moriarty Lemmon, Emily; Aitken, Alexander L; Haddad, Stephanie; Farrell, Brian D.; Marvaldi, Adriana Elena; Oberprieler, Rolf G.; McKenna, Duane D.
Año de publicación
2018
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants-first monocots, then other groups-beginning in the Cretaceous.
Facultad de Ciencias Naturales y Museo
Materia
Biología
Curculionoidea
Curculionidae
Cchronogram
Exon
Hybrid enrichment
Phylogenetics
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
SEDICI (UNLP)
Institución
Universidad Nacional de La Plata
OAI Identificador
oai:sedici.unlp.edu.ar:10915/137750

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repository_id_str 1329
network_name_str SEDICI (UNLP)
spelling Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of WeevilsShin, SeunggwanClarke, Dave J.Lemmon, Alan R.Moriarty Lemmon, EmilyAitken, Alexander LHaddad, StephanieFarrell, Brian D.Marvaldi, Adriana ElenaOberprieler, Rolf G.McKenna, Duane D.BiologíaCurculionoideaCurculionidaeCchronogramExonHybrid enrichmentPhylogeneticsThe phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants-first monocots, then other groups-beginning in the Cretaceous.Facultad de Ciencias Naturales y Museo2018info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionArticulohttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdf823-836http://sedici.unlp.edu.ar/handle/10915/137750enginfo:eu-repo/semantics/altIdentifier/issn/1537-1719info:eu-repo/semantics/altIdentifier/issn/0737-4038info:eu-repo/semantics/altIdentifier/doi/10.1093/molbev/msx324info:eu-repo/semantics/altIdentifier/pmid/29294021info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)reponame:SEDICI (UNLP)instname:Universidad Nacional de La Platainstacron:UNLP2025-10-15T11:24:10Zoai:sedici.unlp.edu.ar:10915/137750Institucionalhttp://sedici.unlp.edu.ar/Universidad públicaNo correspondehttp://sedici.unlp.edu.ar/oai/snrdalira@sedici.unlp.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:13292025-10-15 11:24:10.833SEDICI (UNLP) - Universidad Nacional de La Platafalse
dc.title.none.fl_str_mv Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils
title Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils
spellingShingle Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils
Shin, Seunggwan
Biología
Curculionoidea
Curculionidae
Cchronogram
Exon
Hybrid enrichment
Phylogenetics
title_short Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils
title_full Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils
title_fullStr Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils
title_full_unstemmed Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils
title_sort Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils
dc.creator.none.fl_str_mv Shin, Seunggwan
Clarke, Dave J.
Lemmon, Alan R.
Moriarty Lemmon, Emily
Aitken, Alexander L
Haddad, Stephanie
Farrell, Brian D.
Marvaldi, Adriana Elena
Oberprieler, Rolf G.
McKenna, Duane D.
author Shin, Seunggwan
author_facet Shin, Seunggwan
Clarke, Dave J.
Lemmon, Alan R.
Moriarty Lemmon, Emily
Aitken, Alexander L
Haddad, Stephanie
Farrell, Brian D.
Marvaldi, Adriana Elena
Oberprieler, Rolf G.
McKenna, Duane D.
author_role author
author2 Clarke, Dave J.
Lemmon, Alan R.
Moriarty Lemmon, Emily
Aitken, Alexander L
Haddad, Stephanie
Farrell, Brian D.
Marvaldi, Adriana Elena
Oberprieler, Rolf G.
McKenna, Duane D.
author2_role author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Biología
Curculionoidea
Curculionidae
Cchronogram
Exon
Hybrid enrichment
Phylogenetics
topic Biología
Curculionoidea
Curculionidae
Cchronogram
Exon
Hybrid enrichment
Phylogenetics
dc.description.none.fl_txt_mv The phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants-first monocots, then other groups-beginning in the Cretaceous.
Facultad de Ciencias Naturales y Museo
description The phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants-first monocots, then other groups-beginning in the Cretaceous.
publishDate 2018
dc.date.none.fl_str_mv 2018
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
Articulo
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://sedici.unlp.edu.ar/handle/10915/137750
url http://sedici.unlp.edu.ar/handle/10915/137750
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/issn/1537-1719
info:eu-repo/semantics/altIdentifier/issn/0737-4038
info:eu-repo/semantics/altIdentifier/doi/10.1093/molbev/msx324
info:eu-repo/semantics/altIdentifier/pmid/29294021
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
823-836
dc.source.none.fl_str_mv reponame:SEDICI (UNLP)
instname:Universidad Nacional de La Plata
instacron:UNLP
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repository.name.fl_str_mv SEDICI (UNLP) - Universidad Nacional de La Plata
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