Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils
- Autores
- Shin, Seunggwan; Clarke, Dave J.; Lemmon, Alan R.; Moriarty Lemmon, Emily; Aitken, Alexander L; Haddad, Stephanie; Farrell, Brian D.; Marvaldi, Adriana Elena; Oberprieler, Rolf G.; McKenna, Duane D.
- Año de publicación
- 2018
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- The phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants-first monocots, then other groups-beginning in the Cretaceous.
Facultad de Ciencias Naturales y Museo - Materia
-
Biología
Curculionoidea
Curculionidae
Cchronogram
Exon
Hybrid enrichment
Phylogenetics - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- http://creativecommons.org/licenses/by-nc-sa/4.0/
- Repositorio
- Institución
- Universidad Nacional de La Plata
- OAI Identificador
- oai:sedici.unlp.edu.ar:10915/137750
Ver los metadatos del registro completo
id |
SEDICI_6e80ba5aaf71c49a7c0416c1126c43db |
---|---|
oai_identifier_str |
oai:sedici.unlp.edu.ar:10915/137750 |
network_acronym_str |
SEDICI |
repository_id_str |
1329 |
network_name_str |
SEDICI (UNLP) |
spelling |
Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of WeevilsShin, SeunggwanClarke, Dave J.Lemmon, Alan R.Moriarty Lemmon, EmilyAitken, Alexander LHaddad, StephanieFarrell, Brian D.Marvaldi, Adriana ElenaOberprieler, Rolf G.McKenna, Duane D.BiologíaCurculionoideaCurculionidaeCchronogramExonHybrid enrichmentPhylogeneticsThe phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants-first monocots, then other groups-beginning in the Cretaceous.Facultad de Ciencias Naturales y Museo2018info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionArticulohttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdf823-836http://sedici.unlp.edu.ar/handle/10915/137750enginfo:eu-repo/semantics/altIdentifier/issn/1537-1719info:eu-repo/semantics/altIdentifier/issn/0737-4038info:eu-repo/semantics/altIdentifier/doi/10.1093/molbev/msx324info:eu-repo/semantics/altIdentifier/pmid/29294021info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)reponame:SEDICI (UNLP)instname:Universidad Nacional de La Platainstacron:UNLP2025-10-15T11:24:10Zoai:sedici.unlp.edu.ar:10915/137750Institucionalhttp://sedici.unlp.edu.ar/Universidad públicaNo correspondehttp://sedici.unlp.edu.ar/oai/snrdalira@sedici.unlp.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:13292025-10-15 11:24:10.833SEDICI (UNLP) - Universidad Nacional de La Platafalse |
dc.title.none.fl_str_mv |
Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils |
title |
Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils |
spellingShingle |
Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils Shin, Seunggwan Biología Curculionoidea Curculionidae Cchronogram Exon Hybrid enrichment Phylogenetics |
title_short |
Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils |
title_full |
Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils |
title_fullStr |
Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils |
title_full_unstemmed |
Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils |
title_sort |
Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils |
dc.creator.none.fl_str_mv |
Shin, Seunggwan Clarke, Dave J. Lemmon, Alan R. Moriarty Lemmon, Emily Aitken, Alexander L Haddad, Stephanie Farrell, Brian D. Marvaldi, Adriana Elena Oberprieler, Rolf G. McKenna, Duane D. |
author |
Shin, Seunggwan |
author_facet |
Shin, Seunggwan Clarke, Dave J. Lemmon, Alan R. Moriarty Lemmon, Emily Aitken, Alexander L Haddad, Stephanie Farrell, Brian D. Marvaldi, Adriana Elena Oberprieler, Rolf G. McKenna, Duane D. |
author_role |
author |
author2 |
Clarke, Dave J. Lemmon, Alan R. Moriarty Lemmon, Emily Aitken, Alexander L Haddad, Stephanie Farrell, Brian D. Marvaldi, Adriana Elena Oberprieler, Rolf G. McKenna, Duane D. |
author2_role |
author author author author author author author author author |
dc.subject.none.fl_str_mv |
Biología Curculionoidea Curculionidae Cchronogram Exon Hybrid enrichment Phylogenetics |
topic |
Biología Curculionoidea Curculionidae Cchronogram Exon Hybrid enrichment Phylogenetics |
dc.description.none.fl_txt_mv |
The phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants-first monocots, then other groups-beginning in the Cretaceous. Facultad de Ciencias Naturales y Museo |
description |
The phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants-first monocots, then other groups-beginning in the Cretaceous. |
publishDate |
2018 |
dc.date.none.fl_str_mv |
2018 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion Articulo http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://sedici.unlp.edu.ar/handle/10915/137750 |
url |
http://sedici.unlp.edu.ar/handle/10915/137750 |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/issn/1537-1719 info:eu-repo/semantics/altIdentifier/issn/0737-4038 info:eu-repo/semantics/altIdentifier/doi/10.1093/molbev/msx324 info:eu-repo/semantics/altIdentifier/pmid/29294021 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) |
dc.format.none.fl_str_mv |
application/pdf 823-836 |
dc.source.none.fl_str_mv |
reponame:SEDICI (UNLP) instname:Universidad Nacional de La Plata instacron:UNLP |
reponame_str |
SEDICI (UNLP) |
collection |
SEDICI (UNLP) |
instname_str |
Universidad Nacional de La Plata |
instacron_str |
UNLP |
institution |
UNLP |
repository.name.fl_str_mv |
SEDICI (UNLP) - Universidad Nacional de La Plata |
repository.mail.fl_str_mv |
alira@sedici.unlp.edu.ar |
_version_ |
1846064295956185088 |
score |
13.22299 |