Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils

Autores
Shin, Seunggwan; Clarke, Dave J.; Lemmon, Alan R.; Moriarty Lemmon, Emily; Aitken, Alexander L.; Haddad, Stephanie; Farrell, Brian D.; Marvaldi, Adriana; Oberprieler, Rolf G.; Mckenna, Duane D.
Año de publicación
2018
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants - first monocots, then other groups - beginning in the Cretaceous.
Fil: Shin, Seunggwan. University of Memphis; Estados Unidos
Fil: Clarke, Dave J.. University of Memphis; Estados Unidos
Fil: Lemmon, Alan R.. Florida State University; Estados Unidos
Fil: Moriarty Lemmon, Emily. Florida State University; Estados Unidos
Fil: Aitken, Alexander L.. University of Memphis; Estados Unidos
Fil: Haddad, Stephanie. University of Memphis; Estados Unidos
Fil: Farrell, Brian D.. Harvard University; Estados Unidos
Fil: Marvaldi, Adriana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Entomología; Argentina
Fil: Oberprieler, Rolf G.. Csiro; Australia. Australian National Insect Collection; Australia
Fil: Mckenna, Duane D.. University of Memphis; Estados Unidos
Materia
Chronogram
Curculionidae
Curculionoidea
Exon
Hybrid Enrichment
Phylogenetics
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/57287
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/57287
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevilsShin, SeunggwanClarke, Dave J.Lemmon, Alan R.Moriarty Lemmon, EmilyAitken, Alexander L.Haddad, StephanieFarrell, Brian D.Marvaldi, AdrianaOberprieler, Rolf G.Mckenna, Duane D.ChronogramCurculionidaeCurculionoideaExonHybrid EnrichmentPhylogeneticshttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants - first monocots, then other groups - beginning in the Cretaceous.Fil: Shin, Seunggwan. University of Memphis; Estados UnidosFil: Clarke, Dave J.. University of Memphis; Estados UnidosFil: Lemmon, Alan R.. Florida State University; Estados UnidosFil: Moriarty Lemmon, Emily. Florida State University; Estados UnidosFil: Aitken, Alexander L.. University of Memphis; Estados UnidosFil: Haddad, Stephanie. University of Memphis; Estados UnidosFil: Farrell, Brian D.. Harvard University; Estados UnidosFil: Marvaldi, Adriana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Entomología; ArgentinaFil: Oberprieler, Rolf G.. Csiro; Australia. Australian National Insect Collection; AustraliaFil: Mckenna, Duane D.. University of Memphis; Estados UnidosOxford University Press2018-04info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/57287Shin, Seunggwan; Clarke, Dave J.; Lemmon, Alan R.; Moriarty Lemmon, Emily; Aitken, Alexander L.; et al.; Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils; Oxford University Press; Molecular Biology and Evolution; 35; 4; 4-2018; 823-8360737-4038CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1093/molbev/msx324info:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/mbe/article/35/4/823/4765916info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-17T11:08:29Zoai:ri.conicet.gov.ar:11336/57287instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-17 11:08:29.555CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils
title Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils
spellingShingle Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils
Shin, Seunggwan
Chronogram
Curculionidae
Curculionoidea
Exon
Hybrid Enrichment
Phylogenetics
title_short Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils
title_full Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils
title_fullStr Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils
title_full_unstemmed Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils
title_sort Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils
dc.creator.none.fl_str_mv Shin, Seunggwan
Clarke, Dave J.
Lemmon, Alan R.
Moriarty Lemmon, Emily
Aitken, Alexander L.
Haddad, Stephanie
Farrell, Brian D.
Marvaldi, Adriana
Oberprieler, Rolf G.
Mckenna, Duane D.
author Shin, Seunggwan
author_facet Shin, Seunggwan
Clarke, Dave J.
Lemmon, Alan R.
Moriarty Lemmon, Emily
Aitken, Alexander L.
Haddad, Stephanie
Farrell, Brian D.
Marvaldi, Adriana
Oberprieler, Rolf G.
Mckenna, Duane D.
author_role author
author2 Clarke, Dave J.
Lemmon, Alan R.
Moriarty Lemmon, Emily
Aitken, Alexander L.
Haddad, Stephanie
Farrell, Brian D.
Marvaldi, Adriana
Oberprieler, Rolf G.
Mckenna, Duane D.
author2_role author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Chronogram
Curculionidae
Curculionoidea
Exon
Hybrid Enrichment
Phylogenetics
topic Chronogram
Curculionidae
Curculionoidea
Exon
Hybrid Enrichment
Phylogenetics
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants - first monocots, then other groups - beginning in the Cretaceous.
Fil: Shin, Seunggwan. University of Memphis; Estados Unidos
Fil: Clarke, Dave J.. University of Memphis; Estados Unidos
Fil: Lemmon, Alan R.. Florida State University; Estados Unidos
Fil: Moriarty Lemmon, Emily. Florida State University; Estados Unidos
Fil: Aitken, Alexander L.. University of Memphis; Estados Unidos
Fil: Haddad, Stephanie. University of Memphis; Estados Unidos
Fil: Farrell, Brian D.. Harvard University; Estados Unidos
Fil: Marvaldi, Adriana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Entomología; Argentina
Fil: Oberprieler, Rolf G.. Csiro; Australia. Australian National Insect Collection; Australia
Fil: Mckenna, Duane D.. University of Memphis; Estados Unidos
description The phylogeny and evolution of weevils (the beetle superfamily Curculionoidea) has been extensively studied, but many relationships, especially in the large family Curculionidae (true weevils; > 50,000 species), remain uncertain. We used phylogenomic methods to obtain DNA sequences from 522 protein-coding genes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred relationships were generally congruent with those reported in previous studies, but with some interesting exceptions. Notably, the backbone relationships of the weevil phylogeny were consistently strongly supported, and the former Nemonychidae (pine flower snout beetles) were polyphyletic, with the subfamily Cimberidinae (here elevated to Cimberididae) placed as sister group of all other weevils. The clade comprising the sister families Brentidae (straight-snouted weevils) and Curculionidae was maximally supported and the composition of both families was firmly established. The contributions of substitution modeling, codon usage and/or mutational bias to differences between trees reconstructed from amino acid and nucleotide sequences were explored. A reconstructed timetree for weevils is consistent with a Mesozoic radiation of gymnosperm-associated taxa to form most extant families and diversification of Curculionidae alongside flowering plants - first monocots, then other groups - beginning in the Cretaceous.
publishDate 2018
dc.date.none.fl_str_mv 2018-04
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/57287
Shin, Seunggwan; Clarke, Dave J.; Lemmon, Alan R.; Moriarty Lemmon, Emily; Aitken, Alexander L.; et al.; Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils; Oxford University Press; Molecular Biology and Evolution; 35; 4; 4-2018; 823-836
0737-4038
CONICET Digital
CONICET
url http://hdl.handle.net/11336/57287
identifier_str_mv Shin, Seunggwan; Clarke, Dave J.; Lemmon, Alan R.; Moriarty Lemmon, Emily; Aitken, Alexander L.; et al.; Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils; Oxford University Press; Molecular Biology and Evolution; 35; 4; 4-2018; 823-836
0737-4038
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1093/molbev/msx324
info:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/mbe/article/35/4/823/4765916
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.001348

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