A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations
- Autores
- Pereira, R.; Alves, C.; Aler, M.; Amorim, A.; Arévalo, C.; Betancor, E.; Braganholi, D.; Bravo, M. L.; Brito, P.; Builes, J. J.; Burgos, G.; Carvalho, E. F.; Castillo, A.; Catanesi, Cecilia Inés; Cicarelli, R. M. B.; Coufalova, P.; Dario, P.; D’Amato, M. E.; Davison, S.; Ferragut, J.; Fondevila, M.; Furfurov, S.; García, O.; Gaviria, A.; Gomes, I.; González, E.; Gonzalez-Liñan, A.; Gross, T. E.; Hernández, A.; Huang, Q.; Jiménez, S.; Jobim, L. F.; López-Parra, A. M.; Marino, M.; Marques, S.; Martínez-Cortés, G.; Masciovecchio, V.; Parra, D.; Penacino, G.; Pinheiro, M. F.; Porto, M. J.; Posada, Y.; Restrepo, C.; Ribeiro, T.; Rubio, L.; Sala, A.; Santurtún, A.; Solís, L. S.; Souto, L.; Streitemberger, E.; Torres, A.; Vilela-Lamego, C.; Yunis, J. J.; Yurrebaso, I.; Gusmão, L.
- Año de publicación
- 2018
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- A collaborative effort was carried out by the Spanish and Portuguese Speaking Working Group of the International Society for Forensic Genetics (GHEP-ISFG) to promote knowledge exchange between associate laboratories interested in the implementation of indel-based methodologies and build allele frequency databases of 38 indels for forensic applications. These databases include populations from different countries that are relevant for identification and kinship investigations undertaken by the participating laboratories. Before compiling population data, participants were asked to type the 38 indels in blind samples from annual GHEP-ISFG proficiency tests, using an amplification protocol previously described. Only laboratories that reported correct results contributed with population data to this study. A total of 5839 samples were genotyped from 45 different populations from Africa, America, East Asia, Europe and Middle East. Population differentiation analysis showed significant differences between most populations studied from Africa and America, as well as between two Asian populations from China and East Timor. Low FST values were detected among most European populations. Overall diversities and parameters of forensic efficiency were high in populations from all continents.
Instituto Multidisciplinario de Biología Celular
Facultad de Ciencias Naturales y Museo - Materia
-
Ciencias Exactas
Medicina
Forensic genetics
Human identification
Insertion deletion (indel)
Allele frequency databases
Population data - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- http://creativecommons.org/licenses/by-nc-sa/4.0/
- Repositorio
- Institución
- Universidad Nacional de La Plata
- OAI Identificador
- oai:sedici.unlp.edu.ar:10915/128519
Ver los metadatos del registro completo
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A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populationsPereira, R.Alves, C.Aler, M.Amorim, A.Arévalo, C.Betancor, E.Braganholi, D.Bravo, M. L.Brito, P.Builes, J. J.Burgos, G.Carvalho, E. F.Castillo, A.Catanesi, Cecilia InésCicarelli, R. M. B.Coufalova, P.Dario, P.D’Amato, M. E.Davison, S.Ferragut, J.Fondevila, M.Furfurov, S.García, O.Gaviria, A.Gomes, I.González, E.Gonzalez-Liñan, A.Gross, T. E.Hernández, A.Huang, Q.Jiménez, S.Jobim, L. F.López-Parra, A. M.Marino, M.Marques, S.Martínez-Cortés, G.Masciovecchio, V.Parra, D.Penacino, G.Pinheiro, M. F.Porto, M. J.Posada, Y.Restrepo, C.Ribeiro, T.Rubio, L.Sala, A.Santurtún, A.Solís, L. S.Souto, L.Streitemberger, E.Torres, A.Vilela-Lamego, C.Yunis, J. J.Yurrebaso, I.Gusmão, L.Ciencias ExactasMedicinaForensic geneticsHuman identificationInsertion deletion (indel)Allele frequency databasesPopulation dataA collaborative effort was carried out by the Spanish and Portuguese Speaking Working Group of the International Society for Forensic Genetics (GHEP-ISFG) to promote knowledge exchange between associate laboratories interested in the implementation of indel-based methodologies and build allele frequency databases of 38 indels for forensic applications. These databases include populations from different countries that are relevant for identification and kinship investigations undertaken by the participating laboratories. Before compiling population data, participants were asked to type the 38 indels in blind samples from annual GHEP-ISFG proficiency tests, using an amplification protocol previously described. Only laboratories that reported correct results contributed with population data to this study. A total of 5839 samples were genotyped from 45 different populations from Africa, America, East Asia, Europe and Middle East. Population differentiation analysis showed significant differences between most populations studied from Africa and America, as well as between two Asian populations from China and East Timor. Low F<sub>ST</sub> values were detected among most European populations. Overall diversities and parameters of forensic efficiency were high in populations from all continents.Instituto Multidisciplinario de Biología CelularFacultad de Ciencias Naturales y Museo2018-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionArticulohttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdf18-25http://sedici.unlp.edu.ar/handle/10915/128519enginfo:eu-repo/semantics/altIdentifier/issn/1878-0326info:eu-repo/semantics/altIdentifier/issn/1872-4973info:eu-repo/semantics/altIdentifier/pmid/29024923info:eu-repo/semantics/altIdentifier/doi/10.1016/j.fsigen.2017.09.012info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)reponame:SEDICI (UNLP)instname:Universidad Nacional de La Platainstacron:UNLP2025-09-29T11:30:58Zoai:sedici.unlp.edu.ar:10915/128519Institucionalhttp://sedici.unlp.edu.ar/Universidad públicaNo correspondehttp://sedici.unlp.edu.ar/oai/snrdalira@sedici.unlp.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:13292025-09-29 11:30:58.939SEDICI (UNLP) - Universidad Nacional de La Platafalse |
dc.title.none.fl_str_mv |
A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations |
title |
A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations |
spellingShingle |
A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations Pereira, R. Ciencias Exactas Medicina Forensic genetics Human identification Insertion deletion (indel) Allele frequency databases Population data |
title_short |
A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations |
title_full |
A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations |
title_fullStr |
A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations |
title_full_unstemmed |
A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations |
title_sort |
A GHEP-ISFG collaborative study on the genetic variation of 38 autosomal indels for human identification in different continental populations |
dc.creator.none.fl_str_mv |
Pereira, R. Alves, C. Aler, M. Amorim, A. Arévalo, C. Betancor, E. Braganholi, D. Bravo, M. L. Brito, P. Builes, J. J. Burgos, G. Carvalho, E. F. Castillo, A. Catanesi, Cecilia Inés Cicarelli, R. M. B. Coufalova, P. Dario, P. D’Amato, M. E. Davison, S. Ferragut, J. Fondevila, M. Furfurov, S. García, O. Gaviria, A. Gomes, I. González, E. Gonzalez-Liñan, A. Gross, T. E. Hernández, A. Huang, Q. Jiménez, S. Jobim, L. F. López-Parra, A. M. Marino, M. Marques, S. Martínez-Cortés, G. Masciovecchio, V. Parra, D. Penacino, G. Pinheiro, M. F. Porto, M. J. Posada, Y. Restrepo, C. Ribeiro, T. Rubio, L. Sala, A. Santurtún, A. Solís, L. S. Souto, L. Streitemberger, E. Torres, A. Vilela-Lamego, C. Yunis, J. J. Yurrebaso, I. Gusmão, L. |
author |
Pereira, R. |
author_facet |
Pereira, R. Alves, C. Aler, M. Amorim, A. Arévalo, C. Betancor, E. Braganholi, D. Bravo, M. L. Brito, P. Builes, J. J. Burgos, G. Carvalho, E. F. Castillo, A. Catanesi, Cecilia Inés Cicarelli, R. M. B. Coufalova, P. Dario, P. D’Amato, M. E. Davison, S. Ferragut, J. Fondevila, M. Furfurov, S. García, O. Gaviria, A. Gomes, I. González, E. Gonzalez-Liñan, A. Gross, T. E. Hernández, A. Huang, Q. Jiménez, S. Jobim, L. F. López-Parra, A. M. Marino, M. Marques, S. Martínez-Cortés, G. Masciovecchio, V. Parra, D. Penacino, G. Pinheiro, M. F. Porto, M. J. Posada, Y. Restrepo, C. Ribeiro, T. Rubio, L. Sala, A. Santurtún, A. Solís, L. S. Souto, L. Streitemberger, E. Torres, A. Vilela-Lamego, C. Yunis, J. J. Yurrebaso, I. Gusmão, L. |
author_role |
author |
author2 |
Alves, C. Aler, M. Amorim, A. Arévalo, C. Betancor, E. Braganholi, D. Bravo, M. L. Brito, P. Builes, J. J. Burgos, G. Carvalho, E. F. Castillo, A. Catanesi, Cecilia Inés Cicarelli, R. M. B. Coufalova, P. Dario, P. D’Amato, M. E. Davison, S. Ferragut, J. Fondevila, M. Furfurov, S. García, O. Gaviria, A. Gomes, I. González, E. Gonzalez-Liñan, A. Gross, T. E. Hernández, A. Huang, Q. Jiménez, S. Jobim, L. F. López-Parra, A. M. Marino, M. Marques, S. Martínez-Cortés, G. Masciovecchio, V. Parra, D. Penacino, G. Pinheiro, M. F. Porto, M. J. Posada, Y. Restrepo, C. Ribeiro, T. Rubio, L. Sala, A. Santurtún, A. Solís, L. S. Souto, L. Streitemberger, E. Torres, A. Vilela-Lamego, C. Yunis, J. J. Yurrebaso, I. Gusmão, L. |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.subject.none.fl_str_mv |
Ciencias Exactas Medicina Forensic genetics Human identification Insertion deletion (indel) Allele frequency databases Population data |
topic |
Ciencias Exactas Medicina Forensic genetics Human identification Insertion deletion (indel) Allele frequency databases Population data |
dc.description.none.fl_txt_mv |
A collaborative effort was carried out by the Spanish and Portuguese Speaking Working Group of the International Society for Forensic Genetics (GHEP-ISFG) to promote knowledge exchange between associate laboratories interested in the implementation of indel-based methodologies and build allele frequency databases of 38 indels for forensic applications. These databases include populations from different countries that are relevant for identification and kinship investigations undertaken by the participating laboratories. Before compiling population data, participants were asked to type the 38 indels in blind samples from annual GHEP-ISFG proficiency tests, using an amplification protocol previously described. Only laboratories that reported correct results contributed with population data to this study. A total of 5839 samples were genotyped from 45 different populations from Africa, America, East Asia, Europe and Middle East. Population differentiation analysis showed significant differences between most populations studied from Africa and America, as well as between two Asian populations from China and East Timor. Low F<sub>ST</sub> values were detected among most European populations. Overall diversities and parameters of forensic efficiency were high in populations from all continents. Instituto Multidisciplinario de Biología Celular Facultad de Ciencias Naturales y Museo |
description |
A collaborative effort was carried out by the Spanish and Portuguese Speaking Working Group of the International Society for Forensic Genetics (GHEP-ISFG) to promote knowledge exchange between associate laboratories interested in the implementation of indel-based methodologies and build allele frequency databases of 38 indels for forensic applications. These databases include populations from different countries that are relevant for identification and kinship investigations undertaken by the participating laboratories. Before compiling population data, participants were asked to type the 38 indels in blind samples from annual GHEP-ISFG proficiency tests, using an amplification protocol previously described. Only laboratories that reported correct results contributed with population data to this study. A total of 5839 samples were genotyped from 45 different populations from Africa, America, East Asia, Europe and Middle East. Population differentiation analysis showed significant differences between most populations studied from Africa and America, as well as between two Asian populations from China and East Timor. Low F<sub>ST</sub> values were detected among most European populations. Overall diversities and parameters of forensic efficiency were high in populations from all continents. |
publishDate |
2018 |
dc.date.none.fl_str_mv |
2018-01 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion Articulo http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://sedici.unlp.edu.ar/handle/10915/128519 |
url |
http://sedici.unlp.edu.ar/handle/10915/128519 |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/issn/1878-0326 info:eu-repo/semantics/altIdentifier/issn/1872-4973 info:eu-repo/semantics/altIdentifier/pmid/29024923 info:eu-repo/semantics/altIdentifier/doi/10.1016/j.fsigen.2017.09.012 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) |
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openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) |
dc.format.none.fl_str_mv |
application/pdf 18-25 |
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SEDICI (UNLP) - Universidad Nacional de La Plata |
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