A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide
- Autores
- Marcarino, Maribel O.; Cicetti, Soledad; Zanardi, María Marta; Sarott, Ariel M.
- Año de publicación
- 2022
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Fil: Marcarino, Maribel O. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; Argentina
Fil: Marcarino, Maribel O. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; Argentina
Fil: Cicetti, Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; Argentina
Fil: Cicetti, Soledad. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; Argentina
Fil: Zanardi, María M. Pontificia Universidad Católica Argentina. Facultad de Química e Ingeniería del Rosario. Instituto de Ingeniería Ambiental, Química y Biotecnología Aplicada; Argentina
Abstract: Even in the golden age of NMR, the number of natural products being incorrectly assigned is becoming larger every day. The use of quantum NMR calculations coupled with sophisticated data analysis provides ideal complementary tools to facilitate the elucidation process in challenging cases. Among the current computational methodologies to perform this task, the DP4+ probability is a popular and widely used method. This updated version of Goodman's DP4 synergistically combines NMR calculations at higher levels of theory with the Bayesian analysis of both scaled and unscaled data. Since its publication in late 2015, the use of DP4+ to solve controversial natural products has substantially grown, with several predictions being confirmed by total synthesis. To date, the structures of more than 200 natural products were determined with the aid of DP4+. However, all that glitters is not gold. Besides its intrinsic limitations, on many occasions it has been improperly used with potentially important consequences on the quality of the assignment. Herein we present a critical revision on how the scientific community has been using DP4+, exploring the strengths of the method and how to obtain optimal results from it. We also analyze the weaknesses of DP4+, and the paths to by-pass them to maximize the confidence in the structural elucidation. - Fuente
- Natural Product Reports Vol. 39, 2022
- Materia
-
QUIMICA COMPUTACIONAL
DP4 - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/4.0/
- Repositorio
- Institución
- Pontificia Universidad Católica Argentina
- OAI Identificador
- oai:ucacris:123456789/13950
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A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guideMarcarino, Maribel O.Cicetti, SoledadZanardi, María MartaSarott, Ariel M.QUIMICA COMPUTACIONALDP4Fil: Marcarino, Maribel O. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; ArgentinaFil: Marcarino, Maribel O. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; ArgentinaFil: Cicetti, Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; ArgentinaFil: Cicetti, Soledad. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; ArgentinaFil: Zanardi, María M. Pontificia Universidad Católica Argentina. Facultad de Química e Ingeniería del Rosario. Instituto de Ingeniería Ambiental, Química y Biotecnología Aplicada; ArgentinaAbstract: Even in the golden age of NMR, the number of natural products being incorrectly assigned is becoming larger every day. The use of quantum NMR calculations coupled with sophisticated data analysis provides ideal complementary tools to facilitate the elucidation process in challenging cases. Among the current computational methodologies to perform this task, the DP4+ probability is a popular and widely used method. This updated version of Goodman's DP4 synergistically combines NMR calculations at higher levels of theory with the Bayesian analysis of both scaled and unscaled data. Since its publication in late 2015, the use of DP4+ to solve controversial natural products has substantially grown, with several predictions being confirmed by total synthesis. To date, the structures of more than 200 natural products were determined with the aid of DP4+. However, all that glitters is not gold. Besides its intrinsic limitations, on many occasions it has been improperly used with potentially important consequences on the quality of the assignment. Herein we present a critical revision on how the scientific community has been using DP4+, exploring the strengths of the method and how to obtain optimal results from it. We also analyze the weaknesses of DP4+, and the paths to by-pass them to maximize the confidence in the structural elucidation.Royal Society of Chemistry2022info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttps://repositorio.uca.edu.ar/handle/123456789/139500265-05681460-4752 (online)10.1039/D1NP00030FMarcarino, M.l O. et al. A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide [en línea]. Postprint de artículo publicado en Natural Product Reports. 2022, 39. doi:10.1039/D1NP00030F. Disponible en: https://repositorio.uca.edu.ar/handle/123456789/13950Natural Product Reports Vol. 39, 2022reponame:Repositorio Institucional (UCA)instname:Pontificia Universidad Católica ArgentinaengMétodos de modelado molecular en combinación con análisis quimiométrico para el desarrollo de herramientas predictivasinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/4.0/2025-07-03T10:58:33Zoai:ucacris:123456789/13950instacron:UCAInstitucionalhttps://repositorio.uca.edu.ar/Universidad privadaNo correspondehttps://repositorio.uca.edu.ar/oaiclaudia_fernandez@uca.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:25852025-07-03 10:58:33.776Repositorio Institucional (UCA) - Pontificia Universidad Católica Argentinafalse |
dc.title.none.fl_str_mv |
A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide |
title |
A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide |
spellingShingle |
A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide Marcarino, Maribel O. QUIMICA COMPUTACIONAL DP4 |
title_short |
A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide |
title_full |
A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide |
title_fullStr |
A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide |
title_full_unstemmed |
A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide |
title_sort |
A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide |
dc.creator.none.fl_str_mv |
Marcarino, Maribel O. Cicetti, Soledad Zanardi, María Marta Sarott, Ariel M. |
author |
Marcarino, Maribel O. |
author_facet |
Marcarino, Maribel O. Cicetti, Soledad Zanardi, María Marta Sarott, Ariel M. |
author_role |
author |
author2 |
Cicetti, Soledad Zanardi, María Marta Sarott, Ariel M. |
author2_role |
author author author |
dc.subject.none.fl_str_mv |
QUIMICA COMPUTACIONAL DP4 |
topic |
QUIMICA COMPUTACIONAL DP4 |
dc.description.none.fl_txt_mv |
Fil: Marcarino, Maribel O. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; Argentina Fil: Marcarino, Maribel O. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; Argentina Fil: Cicetti, Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; Argentina Fil: Cicetti, Soledad. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; Argentina Fil: Zanardi, María M. Pontificia Universidad Católica Argentina. Facultad de Química e Ingeniería del Rosario. Instituto de Ingeniería Ambiental, Química y Biotecnología Aplicada; Argentina Abstract: Even in the golden age of NMR, the number of natural products being incorrectly assigned is becoming larger every day. The use of quantum NMR calculations coupled with sophisticated data analysis provides ideal complementary tools to facilitate the elucidation process in challenging cases. Among the current computational methodologies to perform this task, the DP4+ probability is a popular and widely used method. This updated version of Goodman's DP4 synergistically combines NMR calculations at higher levels of theory with the Bayesian analysis of both scaled and unscaled data. Since its publication in late 2015, the use of DP4+ to solve controversial natural products has substantially grown, with several predictions being confirmed by total synthesis. To date, the structures of more than 200 natural products were determined with the aid of DP4+. However, all that glitters is not gold. Besides its intrinsic limitations, on many occasions it has been improperly used with potentially important consequences on the quality of the assignment. Herein we present a critical revision on how the scientific community has been using DP4+, exploring the strengths of the method and how to obtain optimal results from it. We also analyze the weaknesses of DP4+, and the paths to by-pass them to maximize the confidence in the structural elucidation. |
description |
Fil: Marcarino, Maribel O. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; Argentina |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
https://repositorio.uca.edu.ar/handle/123456789/13950 0265-0568 1460-4752 (online) 10.1039/D1NP00030F Marcarino, M.l O. et al. A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide [en línea]. Postprint de artículo publicado en Natural Product Reports. 2022, 39. doi:10.1039/D1NP00030F. Disponible en: https://repositorio.uca.edu.ar/handle/123456789/13950 |
url |
https://repositorio.uca.edu.ar/handle/123456789/13950 |
identifier_str_mv |
0265-0568 1460-4752 (online) 10.1039/D1NP00030F Marcarino, M.l O. et al. A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide [en línea]. Postprint de artículo publicado en Natural Product Reports. 2022, 39. doi:10.1039/D1NP00030F. Disponible en: https://repositorio.uca.edu.ar/handle/123456789/13950 |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Métodos de modelado molecular en combinación con análisis quimiométrico para el desarrollo de herramientas predictivas |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/4.0/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/4.0/ |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Royal Society of Chemistry |
publisher.none.fl_str_mv |
Royal Society of Chemistry |
dc.source.none.fl_str_mv |
Natural Product Reports Vol. 39, 2022 reponame:Repositorio Institucional (UCA) instname:Pontificia Universidad Católica Argentina |
reponame_str |
Repositorio Institucional (UCA) |
collection |
Repositorio Institucional (UCA) |
instname_str |
Pontificia Universidad Católica Argentina |
repository.name.fl_str_mv |
Repositorio Institucional (UCA) - Pontificia Universidad Católica Argentina |
repository.mail.fl_str_mv |
claudia_fernandez@uca.edu.ar |
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13.070432 |