A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide

Autores
Marcarino, Maribel O.; Cicetti, Soledad; Zanardi, María Marta; Sarott, Ariel M.
Año de publicación
2022
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Fil: Marcarino, Maribel O. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; Argentina
Fil: Marcarino, Maribel O. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; Argentina
Fil: Cicetti, Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; Argentina
Fil: Cicetti, Soledad. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; Argentina
Fil: Zanardi, María M. Pontificia Universidad Católica Argentina. Facultad de Química e Ingeniería del Rosario. Instituto de Ingeniería Ambiental, Química y Biotecnología Aplicada; Argentina
Abstract: Even in the golden age of NMR, the number of natural products being incorrectly assigned is becoming larger every day. The use of quantum NMR calculations coupled with sophisticated data analysis provides ideal complementary tools to facilitate the elucidation process in challenging cases. Among the current computational methodologies to perform this task, the DP4+ probability is a popular and widely used method. This updated version of Goodman's DP4 synergistically combines NMR calculations at higher levels of theory with the Bayesian analysis of both scaled and unscaled data. Since its publication in late 2015, the use of DP4+ to solve controversial natural products has substantially grown, with several predictions being confirmed by total synthesis. To date, the structures of more than 200 natural products were determined with the aid of DP4+. However, all that glitters is not gold. Besides its intrinsic limitations, on many occasions it has been improperly used with potentially important consequences on the quality of the assignment. Herein we present a critical revision on how the scientific community has been using DP4+, exploring the strengths of the method and how to obtain optimal results from it. We also analyze the weaknesses of DP4+, and the paths to by-pass them to maximize the confidence in the structural elucidation.
Fuente
Natural Product Reports Vol. 39, 2022
Materia
QUIMICA COMPUTACIONAL
DP4
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
Repositorio Institucional (UCA)
Institución
Pontificia Universidad Católica Argentina
OAI Identificador
oai:ucacris:123456789/13950

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network_name_str Repositorio Institucional (UCA)
spelling A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guideMarcarino, Maribel O.Cicetti, SoledadZanardi, María MartaSarott, Ariel M.QUIMICA COMPUTACIONALDP4Fil: Marcarino, Maribel O. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; ArgentinaFil: Marcarino, Maribel O. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; ArgentinaFil: Cicetti, Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; ArgentinaFil: Cicetti, Soledad. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; ArgentinaFil: Zanardi, María M. Pontificia Universidad Católica Argentina. Facultad de Química e Ingeniería del Rosario. Instituto de Ingeniería Ambiental, Química y Biotecnología Aplicada; ArgentinaAbstract: Even in the golden age of NMR, the number of natural products being incorrectly assigned is becoming larger every day. The use of quantum NMR calculations coupled with sophisticated data analysis provides ideal complementary tools to facilitate the elucidation process in challenging cases. Among the current computational methodologies to perform this task, the DP4+ probability is a popular and widely used method. This updated version of Goodman's DP4 synergistically combines NMR calculations at higher levels of theory with the Bayesian analysis of both scaled and unscaled data. Since its publication in late 2015, the use of DP4+ to solve controversial natural products has substantially grown, with several predictions being confirmed by total synthesis. To date, the structures of more than 200 natural products were determined with the aid of DP4+. However, all that glitters is not gold. Besides its intrinsic limitations, on many occasions it has been improperly used with potentially important consequences on the quality of the assignment. Herein we present a critical revision on how the scientific community has been using DP4+, exploring the strengths of the method and how to obtain optimal results from it. We also analyze the weaknesses of DP4+, and the paths to by-pass them to maximize the confidence in the structural elucidation.Royal Society of Chemistry2022info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttps://repositorio.uca.edu.ar/handle/123456789/139500265-05681460-4752 (online)10.1039/D1NP00030FMarcarino, M.l O. et al. A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide [en línea]. Postprint de artículo publicado en Natural Product Reports. 2022, 39. doi:10.1039/D1NP00030F. Disponible en: https://repositorio.uca.edu.ar/handle/123456789/13950Natural Product Reports Vol. 39, 2022reponame:Repositorio Institucional (UCA)instname:Pontificia Universidad Católica ArgentinaengMétodos de modelado molecular en combinación con análisis quimiométrico para el desarrollo de herramientas predictivasinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/4.0/2025-07-03T10:58:33Zoai:ucacris:123456789/13950instacron:UCAInstitucionalhttps://repositorio.uca.edu.ar/Universidad privadaNo correspondehttps://repositorio.uca.edu.ar/oaiclaudia_fernandez@uca.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:25852025-07-03 10:58:33.776Repositorio Institucional (UCA) - Pontificia Universidad Católica Argentinafalse
dc.title.none.fl_str_mv A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide
title A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide
spellingShingle A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide
Marcarino, Maribel O.
QUIMICA COMPUTACIONAL
DP4
title_short A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide
title_full A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide
title_fullStr A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide
title_full_unstemmed A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide
title_sort A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide
dc.creator.none.fl_str_mv Marcarino, Maribel O.
Cicetti, Soledad
Zanardi, María Marta
Sarott, Ariel M.
author Marcarino, Maribel O.
author_facet Marcarino, Maribel O.
Cicetti, Soledad
Zanardi, María Marta
Sarott, Ariel M.
author_role author
author2 Cicetti, Soledad
Zanardi, María Marta
Sarott, Ariel M.
author2_role author
author
author
dc.subject.none.fl_str_mv QUIMICA COMPUTACIONAL
DP4
topic QUIMICA COMPUTACIONAL
DP4
dc.description.none.fl_txt_mv Fil: Marcarino, Maribel O. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; Argentina
Fil: Marcarino, Maribel O. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; Argentina
Fil: Cicetti, Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; Argentina
Fil: Cicetti, Soledad. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas; Argentina
Fil: Zanardi, María M. Pontificia Universidad Católica Argentina. Facultad de Química e Ingeniería del Rosario. Instituto de Ingeniería Ambiental, Química y Biotecnología Aplicada; Argentina
Abstract: Even in the golden age of NMR, the number of natural products being incorrectly assigned is becoming larger every day. The use of quantum NMR calculations coupled with sophisticated data analysis provides ideal complementary tools to facilitate the elucidation process in challenging cases. Among the current computational methodologies to perform this task, the DP4+ probability is a popular and widely used method. This updated version of Goodman's DP4 synergistically combines NMR calculations at higher levels of theory with the Bayesian analysis of both scaled and unscaled data. Since its publication in late 2015, the use of DP4+ to solve controversial natural products has substantially grown, with several predictions being confirmed by total synthesis. To date, the structures of more than 200 natural products were determined with the aid of DP4+. However, all that glitters is not gold. Besides its intrinsic limitations, on many occasions it has been improperly used with potentially important consequences on the quality of the assignment. Herein we present a critical revision on how the scientific community has been using DP4+, exploring the strengths of the method and how to obtain optimal results from it. We also analyze the weaknesses of DP4+, and the paths to by-pass them to maximize the confidence in the structural elucidation.
description Fil: Marcarino, Maribel O. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Química Rosario; Argentina
publishDate 2022
dc.date.none.fl_str_mv 2022
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://repositorio.uca.edu.ar/handle/123456789/13950
0265-0568
1460-4752 (online)
10.1039/D1NP00030F
Marcarino, M.l O. et al. A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide [en línea]. Postprint de artículo publicado en Natural Product Reports. 2022, 39. doi:10.1039/D1NP00030F. Disponible en: https://repositorio.uca.edu.ar/handle/123456789/13950
url https://repositorio.uca.edu.ar/handle/123456789/13950
identifier_str_mv 0265-0568
1460-4752 (online)
10.1039/D1NP00030F
Marcarino, M.l O. et al. A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad 1 and the ugly. A practical guide [en línea]. Postprint de artículo publicado en Natural Product Reports. 2022, 39. doi:10.1039/D1NP00030F. Disponible en: https://repositorio.uca.edu.ar/handle/123456789/13950
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Métodos de modelado molecular en combinación con análisis quimiométrico para el desarrollo de herramientas predictivas
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/4.0/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/4.0/
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Royal Society of Chemistry
publisher.none.fl_str_mv Royal Society of Chemistry
dc.source.none.fl_str_mv Natural Product Reports Vol. 39, 2022
reponame:Repositorio Institucional (UCA)
instname:Pontificia Universidad Católica Argentina
reponame_str Repositorio Institucional (UCA)
collection Repositorio Institucional (UCA)
instname_str Pontificia Universidad Católica Argentina
repository.name.fl_str_mv Repositorio Institucional (UCA) - Pontificia Universidad Católica Argentina
repository.mail.fl_str_mv claudia_fernandez@uca.edu.ar
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