HBeeID : a molecular tool that identifes honey bee subspecies from diferent geographic populations

• Autores: Donthu, Ravikiran; Marcelino, Jose A. P.; Giordano, Rosanna; Tao, Yudong; Weber, Everett; Avalos, Arian; Band, Mark; Akraiko, Tatsiana; Chen, Shu‑Ching; Reyes, Maria P; Hao, Haiping; Ortiz‑Alvarado, Yarira; Cuf, Charles A.; Pérez Claudio, Eddie; Soto‑Adames, Felipe; Smith‑Pardo, Allan H.; Meikle, William G.; Evans, Jay D.; Giray, Tugrul; Abdelkader, Faten B.; Allsopp, Mike; Ball, Daniel; Morgado, Susana B.; Barjadze, Shalva; Correa‑Benitez, Adriana; Chakir, Amina; Báez, David R.; Chavez, Nabor H. M.; Dalmon, Anne; Douglas, Adrian B.; Fraccica, Carmen; Fernández‑Marín, Hermógenes; Galindo Cardona, Alberto; Guzman‑Novoa, Ernesto; Horsburgh, Robert; Kence, Meral; Kilonzo, Joseph; Kükrer, Mert; Le Conte, Yves; Mazzeo, Gaetana; Mota, Fernando; Muli, Elliud; Oskay, Devrim; Ruiz‑Martínez, José A.; Oliveri, Eugenia; Pichkhaia, Igor; Romane, Abderrahmane; Guillen Sanchez, Cesar; Sikombwa, Evans; Satta, Alberto; Scannapieco, Alejandra Carla; Stanford, Brandi; Soroker, Victoria; Velarde, Rodrigo A.; Vercelli, Monica; Huang, Zachary
• Año de publicación: 2024
• Idioma: inglés
• Tipo de recurso: artículo
• Fuente: BMC Bioinformatics 25 : 278 (August 2024)
• Materia: Honey Bees; Single Nucleotide Polymorphisms; Diagnostic Techniques; Networks; Invasive Species; Abeja Melífera; Polimorfismo de Nucleótido Unico; Técnica de Diagnóstico; Red; Especie Invasiva
• Institución: Instituto Nacional de Tecnología Agropecuaria

Background: Honey bees are the principal commercial pollinators. Along with other arthropods, they are increasingly under threat from anthropogenic factors such as the incursion of invasive honey bee subspecies, pathogens and parasites. Better tools are needed to identify bee subspecies. Genomic data for economic and ecologically important organisms is increasing, but in its basic form its practical application to address ecological problems is limited. Results: We introduce HBeeID a means to identify honey bees. The tool utilizes a knowledge-based network and diagnostic SNPs identified by discriminant analysis of principle components and hierarchical agglomerative clustering. Tests of HBeeID showed that it identifies African, Americas-Africanized, Asian, and European honey bees with a high degree of certainty even when samples lack the full 272 SNPs of HBeeID. Its prediction capacity decreases with highly admixed samples. Conclusion: HBeeID is a high-resolution genomic, SNP based tool, that can be used to identify honey bees and screen species that are invasive. Its flexible design allows for future improvements via sample data additions from other localities.
Instituto de Genética
Fil: Donthu, Ravikiran. Puerto Rico Science, Technology and Research Trust; Estados Unidos
Fil: Donthu, Ravikiran. Mahindra University. Centre for Life Sciences; India
Fil: Marcelino, Jose A. P. Puerto Rico Science, Technology and Research Trust; Estados Unidos
Fil: Marcelino, Jose A. P. Florida Department of Agriculture and Consumer Services. Division of Plant Industry; Estados Unidos
Fil: Giordano, Rosanna. Puerto Rico Science, Technology and Research Trust; Estados Unidos
Fil: Giordano, Rosanna. Florida International University. Institute of Environment; Estados Unidos
Fil: Tao, Yudong. University of Miami. Department of Electrical and Computer Engineering; Estados Unidos
Fil: Weber, Everett. Dartmouth College. Ofce of Institutional Research; Estados Unidos
Fil: Avalos, Arian. United States Department of Agriculture. The Agricultural Research Service (USDA-ARS). Honey Bee Breeding, Genetics and Physiology Research; Estados Unidos
Fil: Band, Mark. University of Illinois. Roy J. Carver Biotechnology Center; Estados Unidos
Fil: Akraiko, Tatsiana. University of Illinois. Roy J. Carver Biotechnology Center; Estados Unidos
Fil: Chen, Shu‑Ching. University of Missouri-Kansas City. Data Science and Analytics Innovation Center (dSAIC); Estados Unidos
Fil: Reyes, Maria P. Florida International University. Knight Foundation School of Computing and Information Sciences; Estados Unidos
Fil: Hao, Haiping. Johns Hopkins University. School of Medicine; Estados Unidos
Fil: Ortiz‑Alvarado, Yarira. University of Puerto Rico. Department of Biology; Estados Unidos
Fil: Cuf, Charles A. University of Puerto Rico. Department of Biology; Estados Unidos
Fil: Pérez Claudio, Eddie. University of Pittsburgh. School of Medicine. Department of Biomedical Informatics; Estados Unidos
Fil: Soto‑Adames, Felipe. Florida Department of Agriculture and Consumer Services. Division of Plant Industry; Estados Unidos
Fil: Smith‑Pardo, Allan H. United States Department of Agriculture. Animal and Plant Health Inspection Service. Plant Protection and Quarantine (USDA-APHIS-PPQ). Science and Technology; Estados Unidos
Fil: Meikle, William G. United States Department of Agriculture. The Agricultural Research Service (USDA-ARS). Carl Hayden Bee Research Center; Estados Unidos
Fil: Evans, Jay D. United States Department of Agriculture. The Agricultural Research Service (USDA-ARS). Bee Research Laboratory; Estados Unidos
Fil: Giray, Tugrul. University of Puerto Rico. Department of Biology; Estados Unidos
Fil: Abdelkader, Faten B. University of Carthage, National Agronomic Institute of Tunisia; Túnez
Fil: Allsopp, Mike. ARC-Plant Protection & Health. Honey Bee Research Section; Sudáfrica
Fil: Ball, Daniel. Forest Fruits Ltd; Zambia
Fil: Morgado, Susana B. Associação de Apicultores do Parque Natural do Tejo Internacional. Meltagus; Portugal
Fil: Barjadze, Shalva. Ilia State University. Institute of Zoology; Georgia
Fil: Correa‑Benitez, Adriana. Universidad Nacional Autónoma de México. Facultad de MedicinaVeterinaria y Zootecnia. Departamento de Medicina y Zootecnia de Abejas, Conejos y Organismos Aquáticos (DMZ:ACyOA); México
Fil: Chakir, Amina. University Cadi Ayyad. Semlalia Faculty of Sciences. Applied Chemistry Laboratory; Marruecos
Fil: Báez, David R. Amateur Beekeeper; Estados Unidos
Fil: Chavez, Nabor H. M. Cochabamba Beekeepers Federation (FEDAC); Bolivia
Fil: Dalmon, Anne. French National Research Institute for Agriculture, Food and Environment (INRAE); Francia
Fil: Douglas, Adrian B. University of Malta. Institute of Earth Systems, Rural Sciences Farmhouse; Malta
Fil: Fraccica, Carmen. Florida Department of Agriculture and Consumer Services. Division of Plant Industry; Estados Unidos
Fil: Fernández‑Marín, Hermógenes. Instituto de Investigaciones Científcas y Servicios de Alta Tecnología. Centro de Biodiversidad y Descubrimiento de Drogas; Panamá
Fil: Galindo Cardona, Alberto. Universidad Nacional de Tucumán. Instituto de Ecología Regional (IER); Argentina
Fil: Galindo Cardona, Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Guzman‑Novoa, Ernesto. University of Guelph. School of Environmental Sciences; Canadá
Fil: Horsburgh, Robert. Florida Department of Agriculture and Consumer Services. Division of Plant Industry; Estados Unidos
Fil: Kence, Meral. Middle East Technical University. Biology Department; Turquía
Fil: Kilonzo, Joseph. International Centre of Insect Physiology and Ecology; Kenia
Fil: Kükrer, Mert. Middle East Technical University. Biology Department; Turquía
Fil: Kükrer, Mert. Kilis 7 Aralık University. Molecular Biology and Genetics Department; Turquía
Fil: Le Conte, Yves. French National Research Institute for Agriculture, Food and Environment (INRAE); Francia
Fil: Mazzeo, Gaetana. Università Degli Studi Di Catania. Dipartimento di Agricoltura, Alimentazione e Ambiente; Italia
Fil: Mota, Fernando. Independent Beekeeper; Portugal
Fil: Muli, Elliud. International Centre of Insect Physiology and Ecology; Kenia
Fil: Muli, Elliud. South Eastern Kenya University; Kenia
Fil: Oskay, Devrim. Tekirdağ Namık Kemal University. Department of Agricultural Biotechnology; Turquía
Fil: Ruiz‑Martínez, José A. High School Lope de Vega. Professional Training in Livestock and Animal Health; España
Fil: Oliveri, Eugenia. Istituto Zooproflattico Sperimentale della Sicilia; Italia
Fil: Pichkhaia, Igor. Chkhorotsku Local Historical Museum; Georgia
Fil: Romane, Abderrahmane. University Cadi Ayyad. Semlalia Faculty of Sciences. Applied Chemistry Laboratory; Marruecos
Fil: Guillen Sanchez, Cesar. University of Costa Rica. Escuela de Agronomía, Sede del Atlántico; Costa Rica
Fil: Sikombwa, Evans. Forest Fruits Ltd; Zambia
Fil: Satta, Alberto. University of Sassari. Department of Agricultural Sciences; Italia
Fil: Scannapieco, Alejandra Carla. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Genética; Argentina
Fil: Scannapieco, Alejandra Carla. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Agrobiotecnología y Biología Molecular (IABIMO); Argentina
Fil: Scannapieco, Alejandra Carla. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Stanford, Brandi. Florida Department of Agriculture and Consumer Services. Division of Plant Industry; Estados Unidos
Fil: Soroker, Victoria. Agricultural Research Organization. The Volcani Center. Institute of Plant Protection. Department of Entomology; Israel
Fil: Velarde, Rodrigo A. PROMIEL-SEDEM. Bolivian Apiculture Institute (IAB); Bolivia
Fil: Vercelli, Monica. Independent Researcher; Italia
Fil: Huang, Zachary. Michigan State University. Apiculture Lab. Department of Entomology; Estados Unidos