Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions
- Autores
- Ortiz, Diego; Hu, Jieyun; Salas Fernandez, Maria G.
- Año de publicación
- 2017
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Sorghum (Sorghum bicolor L. Moench) is a C4 species sensitive to the cold spring conditions that occur at northern latitudes, especially when coupled with excessive light, and that greatly affect the photosynthetic rate. The objective of this study was to discover genes/genomic regions that control the capacity to cope with excessive energy under low temperature conditions during the vegetative growth period. A genome-wide association study (GWAS) was conducted for seven photosynthetic gas exchange and chlorophyll fluorescence traits under three consecutive temperature treatments: control (28 °C/24 °C), cold (15 °C/15 °C), and recovery (28 °C/24 °C). Cold stress significantly reduced the rate of photosynthetic CO2 uptake of sorghum plants, and a total of 143 unique genomic regions were discovered associated with at least one trait in a particular treatment or with derived variables. Ten regions on chromosomes 3, 4, 6, 7, and 8 that harbor multiple significant markers in linkage disequilibrium (LD) were consistently identified in gas exchange and chlorophyll fluorescence traits. Several candidate genes within those intervals have predicted functions related to carotenoids, phytohormones, thioredoxin, components of PSI, and antioxidants. These regions represent the most promising results for future validation and with potential application for the improvement of crop productivity under cold stress.
EEA Manfredi
Fil: Ortiz, Diego. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Manfredi; Argentina. Iowa State University. Department of Agronomy; Estados Unidos
Fil: Hu, Jieyun. Iowa State University. Department of Agronomy; Estados Unidos
Fil: Salas-Fernandez, María G. Iowa State University. Department of Agronomy; Estados Unidos - Fuente
- Journal of Experimental Botany 68 (16) : 4545-4557. (October 2017)
- Materia
-
Chlorophyll Fluorescence
Cold
Photosynthesis
Cold Stress
Fluorescencia de Clorofila
Frio
Sorghum bicolor
Fotosíntesis
Estrés de Frío
Photoprotection
Crop Productivity
Fotoprotección
Productividad de Cultivos - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- http://creativecommons.org/licenses/by-nc-sa/4.0/
- Repositorio
- Institución
- Instituto Nacional de Tecnología Agropecuaria
- OAI Identificador
- oai:localhost:20.500.12123/18189
Ver los metadatos del registro completo
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Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditionsOrtiz, DiegoHu, JieyunSalas Fernandez, Maria G.Chlorophyll FluorescenceColdPhotosynthesisCold StressFluorescencia de ClorofilaFrioSorghum bicolorFotosíntesisEstrés de FríoPhotoprotectionCrop ProductivityFotoprotecciónProductividad de CultivosSorghum (Sorghum bicolor L. Moench) is a C4 species sensitive to the cold spring conditions that occur at northern latitudes, especially when coupled with excessive light, and that greatly affect the photosynthetic rate. The objective of this study was to discover genes/genomic regions that control the capacity to cope with excessive energy under low temperature conditions during the vegetative growth period. A genome-wide association study (GWAS) was conducted for seven photosynthetic gas exchange and chlorophyll fluorescence traits under three consecutive temperature treatments: control (28 °C/24 °C), cold (15 °C/15 °C), and recovery (28 °C/24 °C). Cold stress significantly reduced the rate of photosynthetic CO2 uptake of sorghum plants, and a total of 143 unique genomic regions were discovered associated with at least one trait in a particular treatment or with derived variables. Ten regions on chromosomes 3, 4, 6, 7, and 8 that harbor multiple significant markers in linkage disequilibrium (LD) were consistently identified in gas exchange and chlorophyll fluorescence traits. Several candidate genes within those intervals have predicted functions related to carotenoids, phytohormones, thioredoxin, components of PSI, and antioxidants. These regions represent the most promising results for future validation and with potential application for the improvement of crop productivity under cold stress.EEA ManfrediFil: Ortiz, Diego. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Manfredi; Argentina. Iowa State University. Department of Agronomy; Estados UnidosFil: Hu, Jieyun. Iowa State University. Department of Agronomy; Estados UnidosFil: Salas-Fernandez, María G. Iowa State University. Department of Agronomy; Estados UnidosOxford University Press2024-06-18T10:11:51Z2024-06-18T10:11:51Z2017-10-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/18189https://academic.oup.com/jxb/article/68/16/4545/40847150022-0957 (Print)1460-2431 (online)https://doi.org/10.1093/jxb/erx276Journal of Experimental Botany 68 (16) : 4545-4557. (October 2017)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-29T13:46:36Zoai:localhost:20.500.12123/18189instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:46:36.795INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse |
dc.title.none.fl_str_mv |
Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions |
title |
Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions |
spellingShingle |
Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions Ortiz, Diego Chlorophyll Fluorescence Cold Photosynthesis Cold Stress Fluorescencia de Clorofila Frio Sorghum bicolor Fotosíntesis Estrés de Frío Photoprotection Crop Productivity Fotoprotección Productividad de Cultivos |
title_short |
Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions |
title_full |
Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions |
title_fullStr |
Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions |
title_full_unstemmed |
Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions |
title_sort |
Genetic architecture of photosynthesis in Sorghum bicolor under non-stress and cold stress conditions |
dc.creator.none.fl_str_mv |
Ortiz, Diego Hu, Jieyun Salas Fernandez, Maria G. |
author |
Ortiz, Diego |
author_facet |
Ortiz, Diego Hu, Jieyun Salas Fernandez, Maria G. |
author_role |
author |
author2 |
Hu, Jieyun Salas Fernandez, Maria G. |
author2_role |
author author |
dc.subject.none.fl_str_mv |
Chlorophyll Fluorescence Cold Photosynthesis Cold Stress Fluorescencia de Clorofila Frio Sorghum bicolor Fotosíntesis Estrés de Frío Photoprotection Crop Productivity Fotoprotección Productividad de Cultivos |
topic |
Chlorophyll Fluorescence Cold Photosynthesis Cold Stress Fluorescencia de Clorofila Frio Sorghum bicolor Fotosíntesis Estrés de Frío Photoprotection Crop Productivity Fotoprotección Productividad de Cultivos |
dc.description.none.fl_txt_mv |
Sorghum (Sorghum bicolor L. Moench) is a C4 species sensitive to the cold spring conditions that occur at northern latitudes, especially when coupled with excessive light, and that greatly affect the photosynthetic rate. The objective of this study was to discover genes/genomic regions that control the capacity to cope with excessive energy under low temperature conditions during the vegetative growth period. A genome-wide association study (GWAS) was conducted for seven photosynthetic gas exchange and chlorophyll fluorescence traits under three consecutive temperature treatments: control (28 °C/24 °C), cold (15 °C/15 °C), and recovery (28 °C/24 °C). Cold stress significantly reduced the rate of photosynthetic CO2 uptake of sorghum plants, and a total of 143 unique genomic regions were discovered associated with at least one trait in a particular treatment or with derived variables. Ten regions on chromosomes 3, 4, 6, 7, and 8 that harbor multiple significant markers in linkage disequilibrium (LD) were consistently identified in gas exchange and chlorophyll fluorescence traits. Several candidate genes within those intervals have predicted functions related to carotenoids, phytohormones, thioredoxin, components of PSI, and antioxidants. These regions represent the most promising results for future validation and with potential application for the improvement of crop productivity under cold stress. EEA Manfredi Fil: Ortiz, Diego. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Manfredi; Argentina. Iowa State University. Department of Agronomy; Estados Unidos Fil: Hu, Jieyun. Iowa State University. Department of Agronomy; Estados Unidos Fil: Salas-Fernandez, María G. Iowa State University. Department of Agronomy; Estados Unidos |
description |
Sorghum (Sorghum bicolor L. Moench) is a C4 species sensitive to the cold spring conditions that occur at northern latitudes, especially when coupled with excessive light, and that greatly affect the photosynthetic rate. The objective of this study was to discover genes/genomic regions that control the capacity to cope with excessive energy under low temperature conditions during the vegetative growth period. A genome-wide association study (GWAS) was conducted for seven photosynthetic gas exchange and chlorophyll fluorescence traits under three consecutive temperature treatments: control (28 °C/24 °C), cold (15 °C/15 °C), and recovery (28 °C/24 °C). Cold stress significantly reduced the rate of photosynthetic CO2 uptake of sorghum plants, and a total of 143 unique genomic regions were discovered associated with at least one trait in a particular treatment or with derived variables. Ten regions on chromosomes 3, 4, 6, 7, and 8 that harbor multiple significant markers in linkage disequilibrium (LD) were consistently identified in gas exchange and chlorophyll fluorescence traits. Several candidate genes within those intervals have predicted functions related to carotenoids, phytohormones, thioredoxin, components of PSI, and antioxidants. These regions represent the most promising results for future validation and with potential application for the improvement of crop productivity under cold stress. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-10-03 2024-06-18T10:11:51Z 2024-06-18T10:11:51Z |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/20.500.12123/18189 https://academic.oup.com/jxb/article/68/16/4545/4084715 0022-0957 (Print) 1460-2431 (online) https://doi.org/10.1093/jxb/erx276 |
url |
http://hdl.handle.net/20.500.12123/18189 https://academic.oup.com/jxb/article/68/16/4545/4084715 https://doi.org/10.1093/jxb/erx276 |
identifier_str_mv |
0022-0957 (Print) 1460-2431 (online) |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by-nc-sa/4.0/ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Oxford University Press |
publisher.none.fl_str_mv |
Oxford University Press |
dc.source.none.fl_str_mv |
Journal of Experimental Botany 68 (16) : 4545-4557. (October 2017) reponame:INTA Digital (INTA) instname:Instituto Nacional de Tecnología Agropecuaria |
reponame_str |
INTA Digital (INTA) |
collection |
INTA Digital (INTA) |
instname_str |
Instituto Nacional de Tecnología Agropecuaria |
repository.name.fl_str_mv |
INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria |
repository.mail.fl_str_mv |
tripaldi.nicolas@inta.gob.ar |
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1844619189558444032 |
score |
12.559606 |