Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina

Autores
Bejerman, Nicolas Esteban; De Breuil, Soledad; Nome Docampo, Claudia
Año de publicación
2018
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
A single-stranded DNA (ssDNA) virus was detected in Yerba mate samples showing chlorotic linear patterns, chlorotic rings and vein yellowing. The full-genome sequences of six different isolates of this ssDNA circular virus were obtained, which share > 99% sequence identity with each other. The newly identified virus has been tentatively named as yerba mate-associated circular DNA virus (YMaCV). The 2707 nt-long viral genome has two and three open reading frame on its complementary and virion-sense strands, respectively. The coat protein is more similar to that of mastreviruses (44% identity), whereas the replication-associated protein of YMaCV is more similar (49% identity) to that encoded by a recently described, unclassified ssDNA virus isolated on trees in Brazil. This is the first report of a circular DNA virus associated with yerba mate. Its unique genome organization and phylogenetic relationships indicates that YMaCV represents a distinct evolutionary lineage within the ssDNA viruses and therefore this virus should be classified as a member of a new species within an unassigned genus or family.
Instituto de Patología Vegetal
Fil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: De Breuil, Soledad. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Nome Docampo, Claudia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fuente
Archives of virology 163 (10) : 2811–2815. (October 2018)
Materia
Mate
ADN
Virus de las Plantas
Virosis
Genética Molecular
Identificación
DNA
Plant Viruses
Molecular Genetics
Identification
Argentina
Virus de ADN Circular
Circular DNA Virus
Single-stranded DNA Virus
ssDNA Virus
Nivel de accesibilidad
acceso restringido
Condiciones de uso
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/3624
Acceder
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oai_identifier_str oai:localhost:20.500.12123/3624
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network_name_str INTA Digital (INTA)
spelling Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in ArgentinaBejerman, Nicolas EstebanDe Breuil, SoledadNome Docampo, ClaudiaMateADNVirus de las PlantasVirosisGenética MolecularIdentificaciónDNAPlant VirusesMolecular GeneticsIdentificationArgentinaVirus de ADN CircularCircular DNA VirusSingle-stranded DNA VirusssDNA VirusA single-stranded DNA (ssDNA) virus was detected in Yerba mate samples showing chlorotic linear patterns, chlorotic rings and vein yellowing. The full-genome sequences of six different isolates of this ssDNA circular virus were obtained, which share > 99% sequence identity with each other. The newly identified virus has been tentatively named as yerba mate-associated circular DNA virus (YMaCV). The 2707 nt-long viral genome has two and three open reading frame on its complementary and virion-sense strands, respectively. The coat protein is more similar to that of mastreviruses (44% identity), whereas the replication-associated protein of YMaCV is more similar (49% identity) to that encoded by a recently described, unclassified ssDNA virus isolated on trees in Brazil. This is the first report of a circular DNA virus associated with yerba mate. Its unique genome organization and phylogenetic relationships indicates that YMaCV represents a distinct evolutionary lineage within the ssDNA viruses and therefore this virus should be classified as a member of a new species within an unassigned genus or family.Instituto de Patología VegetalFil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: De Breuil, Soledad. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Nome Docampo, Claudia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; ArgentinaSpringer2018-10-18T12:45:24Z2018-10-18T12:45:24Z2018-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/3624https://link.springer.com/article/10.1007%2Fs00705-018-3910-y#citeas0304-86081432-8798 (Online)https://doi.org/10.1007/s00705-018-3910-yArchives of virology 163 (10) : 2811–2815. (October 2018)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología AgropecuariaengArgentina (nation)info:eu-repo/semantics/restrictedAccess2025-10-23T11:16:42Zoai:localhost:20.500.12123/3624instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-10-23 11:16:42.353INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina
title Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina
spellingShingle Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina
Bejerman, Nicolas Esteban
Mate
ADN
Virus de las Plantas
Virosis
Genética Molecular
Identificación
DNA
Plant Viruses
Molecular Genetics
Identification
Argentina
Virus de ADN Circular
Circular DNA Virus
Single-stranded DNA Virus
ssDNA Virus
title_short Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina
title_full Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina
title_fullStr Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina
title_full_unstemmed Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina
title_sort Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina
dc.creator.none.fl_str_mv Bejerman, Nicolas Esteban
De Breuil, Soledad
Nome Docampo, Claudia
author Bejerman, Nicolas Esteban
author_facet Bejerman, Nicolas Esteban
De Breuil, Soledad
Nome Docampo, Claudia
author_role author
author2 De Breuil, Soledad
Nome Docampo, Claudia
author2_role author
author
dc.subject.none.fl_str_mv Mate
ADN
Virus de las Plantas
Virosis
Genética Molecular
Identificación
DNA
Plant Viruses
Molecular Genetics
Identification
Argentina
Virus de ADN Circular
Circular DNA Virus
Single-stranded DNA Virus
ssDNA Virus
topic Mate
ADN
Virus de las Plantas
Virosis
Genética Molecular
Identificación
DNA
Plant Viruses
Molecular Genetics
Identification
Argentina
Virus de ADN Circular
Circular DNA Virus
Single-stranded DNA Virus
ssDNA Virus
dc.description.none.fl_txt_mv A single-stranded DNA (ssDNA) virus was detected in Yerba mate samples showing chlorotic linear patterns, chlorotic rings and vein yellowing. The full-genome sequences of six different isolates of this ssDNA circular virus were obtained, which share > 99% sequence identity with each other. The newly identified virus has been tentatively named as yerba mate-associated circular DNA virus (YMaCV). The 2707 nt-long viral genome has two and three open reading frame on its complementary and virion-sense strands, respectively. The coat protein is more similar to that of mastreviruses (44% identity), whereas the replication-associated protein of YMaCV is more similar (49% identity) to that encoded by a recently described, unclassified ssDNA virus isolated on trees in Brazil. This is the first report of a circular DNA virus associated with yerba mate. Its unique genome organization and phylogenetic relationships indicates that YMaCV represents a distinct evolutionary lineage within the ssDNA viruses and therefore this virus should be classified as a member of a new species within an unassigned genus or family.
Instituto de Patología Vegetal
Fil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: De Breuil, Soledad. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Nome Docampo, Claudia. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
description A single-stranded DNA (ssDNA) virus was detected in Yerba mate samples showing chlorotic linear patterns, chlorotic rings and vein yellowing. The full-genome sequences of six different isolates of this ssDNA circular virus were obtained, which share > 99% sequence identity with each other. The newly identified virus has been tentatively named as yerba mate-associated circular DNA virus (YMaCV). The 2707 nt-long viral genome has two and three open reading frame on its complementary and virion-sense strands, respectively. The coat protein is more similar to that of mastreviruses (44% identity), whereas the replication-associated protein of YMaCV is more similar (49% identity) to that encoded by a recently described, unclassified ssDNA virus isolated on trees in Brazil. This is the first report of a circular DNA virus associated with yerba mate. Its unique genome organization and phylogenetic relationships indicates that YMaCV represents a distinct evolutionary lineage within the ssDNA viruses and therefore this virus should be classified as a member of a new species within an unassigned genus or family.
publishDate 2018
dc.date.none.fl_str_mv 2018-10-18T12:45:24Z
2018-10-18T12:45:24Z
2018-10
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/3624
https://link.springer.com/article/10.1007%2Fs00705-018-3910-y#citeas
0304-8608
1432-8798 (Online)
https://doi.org/10.1007/s00705-018-3910-y
url http://hdl.handle.net/20.500.12123/3624
https://link.springer.com/article/10.1007%2Fs00705-018-3910-y#citeas
https://doi.org/10.1007/s00705-018-3910-y
identifier_str_mv 0304-8608
1432-8798 (Online)
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/restrictedAccess
eu_rights_str_mv restrictedAccess
dc.format.none.fl_str_mv application/pdf
dc.coverage.none.fl_str_mv Argentina (nation)
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv Archives of virology 163 (10) : 2811–2815. (October 2018)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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score 12.982451

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