Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio

Autores
Sekely, Jill; Marchelli, Paula; Arana, María Veronica; Dauphin, Benjamin; Mattera, Maria Gabriela; Pastorino, Mario Juan; Scotti, Ivan; Soliani, Carolina; Heer, Katrin; Opgenoorth, Lars
Año de publicación
2023
Idioma
inglés
Tipo de recurso
artículo
Estado
versión enviada
Descripción
Climate change alters relationships among environmental conditions and thus has the potential to change the selection pressures acting on adaptive gene variants. Using a landscape genomic approach, we show that the southern beech species Nothofagus pumilio has notable genetic adaptations to climate along its 2000-kilometer-long range in the Andes. We screened 47,336 SNP loci in 1,632 contigs and found that high-latitude sampling sites have lower genetic diversity, likely due to greater impact of glacial oscillations at high latitudes. Using four genome scan methods, we identified 457 outlier SNPs that are either strongly differentiated among subpopulations or associated with environmental covariates related to temperature, day length, and precipitation. Temperature and day length parameters were associated with notably more outliers than precipitation (n = 133, 113, and 61 outliers, respectively), and almost half of all annotated outliers were related to stress response (n=38, 21%) or catabolism-metabolism (n=43, 24%). Our findings suggest that Nothofagus pumilio is an ideal Andean model of genetic adaptation to climate change because it is locally adapted to extant climate conditions, and shifting patterns among environmental parameters may be detrimental to its future survival and adaptation potential.
EEA Bariloche
Fil: Sekely, Jill. Albert-Ludwigs Universität Freiburg. Forest Genetics; Alemania
Fil: Sekely, Jill. Philipps-Universität Marburg. Plant Ecology and Geobotany; Alemania
Fil: Marchelli, Paula. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Marchelli, Paula. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Arana, María Veronica. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Arana, María Veronica. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Dauphin, Benjamin. Swiss Federal Research Institute WSL; Suiza
Fil: Mattera, Maria Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Mattera, Maria Gabriela. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Pastorino, Mario Juan. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Pastorino, Mario Juan. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Scotti, Ivan. URFM. Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE); Francia
Fil: Soliani, Carolina. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Soliani, Carolina. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Heer, Katrin. Albert-Ludwigs Universität Freiburg. Forest Genetics; Alemania
Fil: Opgenoorth, Lars. Philipps-Universität Marburg. Plant Ecology and Geobotany; Alemania
Fil: Opgenoorth, Lars. Swiss Federal Research Institute WSL; Suiza
Fuente
BioRxiv : the preprint server for biology (April 29, 2023)
Materia
Nothofagus pumilio
Cambio Climático
Temperatura
Factores Ambientales
Genética
Fotoperiodismo
Climate Change
Temperature
Environmental Factors
Genetics
Day Length
Lenga
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/14901
Acceder
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oai_identifier_str oai:localhost:20.500.12123/14901
network_acronym_str INTADig
repository_id_str l
network_name_str INTA Digital (INTA)
spelling Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilioSekely, JillMarchelli, PaulaArana, María VeronicaDauphin, BenjaminMattera, Maria GabrielaPastorino, Mario JuanScotti, IvanSoliani, CarolinaHeer, KatrinOpgenoorth, LarsNothofagus pumilioCambio ClimáticoTemperaturaFactores AmbientalesGenéticaFotoperiodismoClimate ChangeTemperatureEnvironmental FactorsGeneticsDay LengthLengaClimate change alters relationships among environmental conditions and thus has the potential to change the selection pressures acting on adaptive gene variants. Using a landscape genomic approach, we show that the southern beech species Nothofagus pumilio has notable genetic adaptations to climate along its 2000-kilometer-long range in the Andes. We screened 47,336 SNP loci in 1,632 contigs and found that high-latitude sampling sites have lower genetic diversity, likely due to greater impact of glacial oscillations at high latitudes. Using four genome scan methods, we identified 457 outlier SNPs that are either strongly differentiated among subpopulations or associated with environmental covariates related to temperature, day length, and precipitation. Temperature and day length parameters were associated with notably more outliers than precipitation (n = 133, 113, and 61 outliers, respectively), and almost half of all annotated outliers were related to stress response (n=38, 21%) or catabolism-metabolism (n=43, 24%). Our findings suggest that Nothofagus pumilio is an ideal Andean model of genetic adaptation to climate change because it is locally adapted to extant climate conditions, and shifting patterns among environmental parameters may be detrimental to its future survival and adaptation potential.EEA BarilocheFil: Sekely, Jill. Albert-Ludwigs Universität Freiburg. Forest Genetics; AlemaniaFil: Sekely, Jill. Philipps-Universität Marburg. Plant Ecology and Geobotany; AlemaniaFil: Marchelli, Paula. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; ArgentinaFil: Marchelli, Paula. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; ArgentinaFil: Arana, María Veronica. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; ArgentinaFil: Arana, María Veronica. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; ArgentinaFil: Dauphin, Benjamin. Swiss Federal Research Institute WSL; SuizaFil: Mattera, Maria Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; ArgentinaFil: Mattera, Maria Gabriela. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; ArgentinaFil: Pastorino, Mario Juan. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; ArgentinaFil: Pastorino, Mario Juan. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; ArgentinaFil: Scotti, Ivan. URFM. Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE); FranciaFil: Soliani, Carolina. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; ArgentinaFil: Soliani, Carolina. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; ArgentinaFil: Heer, Katrin. Albert-Ludwigs Universität Freiburg. Forest Genetics; AlemaniaFil: Opgenoorth, Lars. Philipps-Universität Marburg. Plant Ecology and Geobotany; AlemaniaFil: Opgenoorth, Lars. Swiss Federal Research Institute WSL; SuizaBioRxiv2023-08-10T17:51:36Z2023-08-10T17:51:36Z2023-04-29info:eu-repo/semantics/articleinfo:eu-repo/semantics/submittedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/14901https://www.biorxiv.org/content/10.1101/2023.04.28.538677v1https://doi.org/10.1101/2023.04.28.538677BioRxiv : the preprint server for biology (April 29, 2023)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-29T13:46:02Zoai:localhost:20.500.12123/14901instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:46:02.775INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio
title Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio
spellingShingle Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio
Sekely, Jill
Nothofagus pumilio
Cambio Climático
Temperatura
Factores Ambientales
Genética
Fotoperiodismo
Climate Change
Temperature
Environmental Factors
Genetics
Day Length
Lenga
title_short Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio
title_full Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio
title_fullStr Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio
title_full_unstemmed Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio
title_sort Temperature and day length drive local adaptation in the Patagonian foundation tree species Nothofagus pumilio
dc.creator.none.fl_str_mv Sekely, Jill
Marchelli, Paula
Arana, María Veronica
Dauphin, Benjamin
Mattera, Maria Gabriela
Pastorino, Mario Juan
Scotti, Ivan
Soliani, Carolina
Heer, Katrin
Opgenoorth, Lars
author Sekely, Jill
author_facet Sekely, Jill
Marchelli, Paula
Arana, María Veronica
Dauphin, Benjamin
Mattera, Maria Gabriela
Pastorino, Mario Juan
Scotti, Ivan
Soliani, Carolina
Heer, Katrin
Opgenoorth, Lars
author_role author
author2 Marchelli, Paula
Arana, María Veronica
Dauphin, Benjamin
Mattera, Maria Gabriela
Pastorino, Mario Juan
Scotti, Ivan
Soliani, Carolina
Heer, Katrin
Opgenoorth, Lars
author2_role author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Nothofagus pumilio
Cambio Climático
Temperatura
Factores Ambientales
Genética
Fotoperiodismo
Climate Change
Temperature
Environmental Factors
Genetics
Day Length
Lenga
topic Nothofagus pumilio
Cambio Climático
Temperatura
Factores Ambientales
Genética
Fotoperiodismo
Climate Change
Temperature
Environmental Factors
Genetics
Day Length
Lenga
dc.description.none.fl_txt_mv Climate change alters relationships among environmental conditions and thus has the potential to change the selection pressures acting on adaptive gene variants. Using a landscape genomic approach, we show that the southern beech species Nothofagus pumilio has notable genetic adaptations to climate along its 2000-kilometer-long range in the Andes. We screened 47,336 SNP loci in 1,632 contigs and found that high-latitude sampling sites have lower genetic diversity, likely due to greater impact of glacial oscillations at high latitudes. Using four genome scan methods, we identified 457 outlier SNPs that are either strongly differentiated among subpopulations or associated with environmental covariates related to temperature, day length, and precipitation. Temperature and day length parameters were associated with notably more outliers than precipitation (n = 133, 113, and 61 outliers, respectively), and almost half of all annotated outliers were related to stress response (n=38, 21%) or catabolism-metabolism (n=43, 24%). Our findings suggest that Nothofagus pumilio is an ideal Andean model of genetic adaptation to climate change because it is locally adapted to extant climate conditions, and shifting patterns among environmental parameters may be detrimental to its future survival and adaptation potential.
EEA Bariloche
Fil: Sekely, Jill. Albert-Ludwigs Universität Freiburg. Forest Genetics; Alemania
Fil: Sekely, Jill. Philipps-Universität Marburg. Plant Ecology and Geobotany; Alemania
Fil: Marchelli, Paula. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Marchelli, Paula. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Arana, María Veronica. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Arana, María Veronica. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Dauphin, Benjamin. Swiss Federal Research Institute WSL; Suiza
Fil: Mattera, Maria Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Mattera, Maria Gabriela. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Pastorino, Mario Juan. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Pastorino, Mario Juan. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Scotti, Ivan. URFM. Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE); Francia
Fil: Soliani, Carolina. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Bariloche. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Soliani, Carolina. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Instituto de Investigaciones Forestales y Agropecuarias Bariloche; Argentina
Fil: Heer, Katrin. Albert-Ludwigs Universität Freiburg. Forest Genetics; Alemania
Fil: Opgenoorth, Lars. Philipps-Universität Marburg. Plant Ecology and Geobotany; Alemania
Fil: Opgenoorth, Lars. Swiss Federal Research Institute WSL; Suiza
description Climate change alters relationships among environmental conditions and thus has the potential to change the selection pressures acting on adaptive gene variants. Using a landscape genomic approach, we show that the southern beech species Nothofagus pumilio has notable genetic adaptations to climate along its 2000-kilometer-long range in the Andes. We screened 47,336 SNP loci in 1,632 contigs and found that high-latitude sampling sites have lower genetic diversity, likely due to greater impact of glacial oscillations at high latitudes. Using four genome scan methods, we identified 457 outlier SNPs that are either strongly differentiated among subpopulations or associated with environmental covariates related to temperature, day length, and precipitation. Temperature and day length parameters were associated with notably more outliers than precipitation (n = 133, 113, and 61 outliers, respectively), and almost half of all annotated outliers were related to stress response (n=38, 21%) or catabolism-metabolism (n=43, 24%). Our findings suggest that Nothofagus pumilio is an ideal Andean model of genetic adaptation to climate change because it is locally adapted to extant climate conditions, and shifting patterns among environmental parameters may be detrimental to its future survival and adaptation potential.
publishDate 2023
dc.date.none.fl_str_mv 2023-08-10T17:51:36Z
2023-08-10T17:51:36Z
2023-04-29
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/submittedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str submittedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/14901
https://www.biorxiv.org/content/10.1101/2023.04.28.538677v1
https://doi.org/10.1101/2023.04.28.538677
url http://hdl.handle.net/20.500.12123/14901
https://www.biorxiv.org/content/10.1101/2023.04.28.538677v1
https://doi.org/10.1101/2023.04.28.538677
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv BioRxiv
publisher.none.fl_str_mv BioRxiv
dc.source.none.fl_str_mv BioRxiv : the preprint server for biology (April 29, 2023)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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score 12.559606

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