Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials

Autores
Cappa, Eduardo Pablo; Stoehr, Michael U.; Chang-Yi, Xie; Yanchuk, Alvin D.
Año de publicación
2016
Idioma
inglés
Tipo de recurso
artículo
Estado
versión aceptada
Descripción
(Co)variance matrices for the assumed model, and thus the specification of the dispersion parameters, should take into account both the negative competition and the positive spatial correlations. In this context, we applied several approaches to identify and quantify the genetic and environmental competition effects and/or environmental heterogeneity in three Douglas-fir genetic trials from the British Columbia tree improvement program in total height and diameter at breast height at ages 12 and 35. Then, we applied an individual-tree mixed model to account jointly for competition effects and environmental heterogeneity (competition + spatial mixed model, CSM). We also compared the resulting estimates of all dispersion parameters and breeding values (BVs) with corresponding estimates from three simpler mixed models. Our analysis revealed that strong spatial environmental variation (predominantly at large-scale) covered the effects of competition in the three Douglas-fir progeny trials. While diameter at breast height at age 35 revealed strong competition effects at both genetic and environmental levels, these effects were not as strong for total height. In general, with strong competition genetic effects, the CSM gave a better fit than the simpler models. Ignoring competition effects and environmental heterogeneity resulted in lower additive genetic variances and higher residual variances than those estimated from the CSM. Ignoring competition effects leads to overestimating environmental heterogeneity, while ignoring the environmental heterogeneity leads to underestimating competition effects. Spearman correlations between BVs predicted from the simplest model and total BVs from the CSM were moderate to high. The implications of all these findings for the genetic improvement of coastal Douglas-fir in British Columbia are discussed
Fil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Stoehr, Michael U. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá
Fil: Chang-Yi, Xie. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá
Fil: Yanchuk, Alvin D. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá
Fuente
Tree genetics & genomes 12 (6) : 102. (December 2016)
Materia
Arboles Forestales
Forest Trees
Genetics
Environmental Factors
Pseudotsuga Menziesii
Genética
Factores Ambientales
Nivel de accesibilidad
acceso restringido
Condiciones de uso
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/1497

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network_name_str INTA Digital (INTA)
spelling Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trialsCappa, Eduardo PabloStoehr, Michael U.Chang-Yi, XieYanchuk, Alvin D.Arboles ForestalesForest TreesGeneticsEnvironmental FactorsPseudotsuga MenziesiiGenéticaFactores Ambientales(Co)variance matrices for the assumed model, and thus the specification of the dispersion parameters, should take into account both the negative competition and the positive spatial correlations. In this context, we applied several approaches to identify and quantify the genetic and environmental competition effects and/or environmental heterogeneity in three Douglas-fir genetic trials from the British Columbia tree improvement program in total height and diameter at breast height at ages 12 and 35. Then, we applied an individual-tree mixed model to account jointly for competition effects and environmental heterogeneity (competition + spatial mixed model, CSM). We also compared the resulting estimates of all dispersion parameters and breeding values (BVs) with corresponding estimates from three simpler mixed models. Our analysis revealed that strong spatial environmental variation (predominantly at large-scale) covered the effects of competition in the three Douglas-fir progeny trials. While diameter at breast height at age 35 revealed strong competition effects at both genetic and environmental levels, these effects were not as strong for total height. In general, with strong competition genetic effects, the CSM gave a better fit than the simpler models. Ignoring competition effects and environmental heterogeneity resulted in lower additive genetic variances and higher residual variances than those estimated from the CSM. Ignoring competition effects leads to overestimating environmental heterogeneity, while ignoring the environmental heterogeneity leads to underestimating competition effects. Spearman correlations between BVs predicted from the simplest model and total BVs from the CSM were moderate to high. The implications of all these findings for the genetic improvement of coastal Douglas-fir in British Columbia are discussedFil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Stoehr, Michael U. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; CanadáFil: Chang-Yi, Xie. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; CanadáFil: Yanchuk, Alvin D. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá2017-10-17T14:47:02Z2017-10-17T14:47:02Z2016-12info:eu-repo/semantics/articleinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/1497https://link.springer.com/article/10.1007/s11295-016-1061-41614-2942 (Print)1614-2950 (Online)https://doi.org/10.1007/s11295-016-1061-4Tree genetics & genomes 12 (6) : 102. (December 2016)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/restrictedAccess2025-09-29T13:44:12Zoai:localhost:20.500.12123/1497instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:44:12.633INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials
title Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials
spellingShingle Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials
Cappa, Eduardo Pablo
Arboles Forestales
Forest Trees
Genetics
Environmental Factors
Pseudotsuga Menziesii
Genética
Factores Ambientales
title_short Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials
title_full Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials
title_fullStr Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials
title_full_unstemmed Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials
title_sort Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials
dc.creator.none.fl_str_mv Cappa, Eduardo Pablo
Stoehr, Michael U.
Chang-Yi, Xie
Yanchuk, Alvin D.
author Cappa, Eduardo Pablo
author_facet Cappa, Eduardo Pablo
Stoehr, Michael U.
Chang-Yi, Xie
Yanchuk, Alvin D.
author_role author
author2 Stoehr, Michael U.
Chang-Yi, Xie
Yanchuk, Alvin D.
author2_role author
author
author
dc.subject.none.fl_str_mv Arboles Forestales
Forest Trees
Genetics
Environmental Factors
Pseudotsuga Menziesii
Genética
Factores Ambientales
topic Arboles Forestales
Forest Trees
Genetics
Environmental Factors
Pseudotsuga Menziesii
Genética
Factores Ambientales
dc.description.none.fl_txt_mv (Co)variance matrices for the assumed model, and thus the specification of the dispersion parameters, should take into account both the negative competition and the positive spatial correlations. In this context, we applied several approaches to identify and quantify the genetic and environmental competition effects and/or environmental heterogeneity in three Douglas-fir genetic trials from the British Columbia tree improvement program in total height and diameter at breast height at ages 12 and 35. Then, we applied an individual-tree mixed model to account jointly for competition effects and environmental heterogeneity (competition + spatial mixed model, CSM). We also compared the resulting estimates of all dispersion parameters and breeding values (BVs) with corresponding estimates from three simpler mixed models. Our analysis revealed that strong spatial environmental variation (predominantly at large-scale) covered the effects of competition in the three Douglas-fir progeny trials. While diameter at breast height at age 35 revealed strong competition effects at both genetic and environmental levels, these effects were not as strong for total height. In general, with strong competition genetic effects, the CSM gave a better fit than the simpler models. Ignoring competition effects and environmental heterogeneity resulted in lower additive genetic variances and higher residual variances than those estimated from the CSM. Ignoring competition effects leads to overestimating environmental heterogeneity, while ignoring the environmental heterogeneity leads to underestimating competition effects. Spearman correlations between BVs predicted from the simplest model and total BVs from the CSM were moderate to high. The implications of all these findings for the genetic improvement of coastal Douglas-fir in British Columbia are discussed
Fil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Stoehr, Michael U. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá
Fil: Chang-Yi, Xie. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá
Fil: Yanchuk, Alvin D. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá
description (Co)variance matrices for the assumed model, and thus the specification of the dispersion parameters, should take into account both the negative competition and the positive spatial correlations. In this context, we applied several approaches to identify and quantify the genetic and environmental competition effects and/or environmental heterogeneity in three Douglas-fir genetic trials from the British Columbia tree improvement program in total height and diameter at breast height at ages 12 and 35. Then, we applied an individual-tree mixed model to account jointly for competition effects and environmental heterogeneity (competition + spatial mixed model, CSM). We also compared the resulting estimates of all dispersion parameters and breeding values (BVs) with corresponding estimates from three simpler mixed models. Our analysis revealed that strong spatial environmental variation (predominantly at large-scale) covered the effects of competition in the three Douglas-fir progeny trials. While diameter at breast height at age 35 revealed strong competition effects at both genetic and environmental levels, these effects were not as strong for total height. In general, with strong competition genetic effects, the CSM gave a better fit than the simpler models. Ignoring competition effects and environmental heterogeneity resulted in lower additive genetic variances and higher residual variances than those estimated from the CSM. Ignoring competition effects leads to overestimating environmental heterogeneity, while ignoring the environmental heterogeneity leads to underestimating competition effects. Spearman correlations between BVs predicted from the simplest model and total BVs from the CSM were moderate to high. The implications of all these findings for the genetic improvement of coastal Douglas-fir in British Columbia are discussed
publishDate 2016
dc.date.none.fl_str_mv 2016-12
2017-10-17T14:47:02Z
2017-10-17T14:47:02Z
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/acceptedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str acceptedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/1497
https://link.springer.com/article/10.1007/s11295-016-1061-4
1614-2942 (Print)
1614-2950 (Online)
https://doi.org/10.1007/s11295-016-1061-4
url http://hdl.handle.net/20.500.12123/1497
https://link.springer.com/article/10.1007/s11295-016-1061-4
https://doi.org/10.1007/s11295-016-1061-4
identifier_str_mv 1614-2942 (Print)
1614-2950 (Online)
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/restrictedAccess
eu_rights_str_mv restrictedAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Tree genetics & genomes 12 (6) : 102. (December 2016)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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