Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials
- Autores
- Cappa, Eduardo Pablo; Stoehr, Michael U.; Chang-Yi, Xie; Yanchuk, Alvin D.
- Año de publicación
- 2016
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión aceptada
- Descripción
- (Co)variance matrices for the assumed model, and thus the specification of the dispersion parameters, should take into account both the negative competition and the positive spatial correlations. In this context, we applied several approaches to identify and quantify the genetic and environmental competition effects and/or environmental heterogeneity in three Douglas-fir genetic trials from the British Columbia tree improvement program in total height and diameter at breast height at ages 12 and 35. Then, we applied an individual-tree mixed model to account jointly for competition effects and environmental heterogeneity (competition + spatial mixed model, CSM). We also compared the resulting estimates of all dispersion parameters and breeding values (BVs) with corresponding estimates from three simpler mixed models. Our analysis revealed that strong spatial environmental variation (predominantly at large-scale) covered the effects of competition in the three Douglas-fir progeny trials. While diameter at breast height at age 35 revealed strong competition effects at both genetic and environmental levels, these effects were not as strong for total height. In general, with strong competition genetic effects, the CSM gave a better fit than the simpler models. Ignoring competition effects and environmental heterogeneity resulted in lower additive genetic variances and higher residual variances than those estimated from the CSM. Ignoring competition effects leads to overestimating environmental heterogeneity, while ignoring the environmental heterogeneity leads to underestimating competition effects. Spearman correlations between BVs predicted from the simplest model and total BVs from the CSM were moderate to high. The implications of all these findings for the genetic improvement of coastal Douglas-fir in British Columbia are discussed
Fil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Stoehr, Michael U. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá
Fil: Chang-Yi, Xie. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá
Fil: Yanchuk, Alvin D. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá - Fuente
- Tree genetics & genomes 12 (6) : 102. (December 2016)
- Materia
-
Arboles Forestales
Forest Trees
Genetics
Environmental Factors
Pseudotsuga Menziesii
Genética
Factores Ambientales - Nivel de accesibilidad
- acceso restringido
- Condiciones de uso
- Repositorio
- Institución
- Instituto Nacional de Tecnología Agropecuaria
- OAI Identificador
- oai:localhost:20.500.12123/1497
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Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trialsCappa, Eduardo PabloStoehr, Michael U.Chang-Yi, XieYanchuk, Alvin D.Arboles ForestalesForest TreesGeneticsEnvironmental FactorsPseudotsuga MenziesiiGenéticaFactores Ambientales(Co)variance matrices for the assumed model, and thus the specification of the dispersion parameters, should take into account both the negative competition and the positive spatial correlations. In this context, we applied several approaches to identify and quantify the genetic and environmental competition effects and/or environmental heterogeneity in three Douglas-fir genetic trials from the British Columbia tree improvement program in total height and diameter at breast height at ages 12 and 35. Then, we applied an individual-tree mixed model to account jointly for competition effects and environmental heterogeneity (competition + spatial mixed model, CSM). We also compared the resulting estimates of all dispersion parameters and breeding values (BVs) with corresponding estimates from three simpler mixed models. Our analysis revealed that strong spatial environmental variation (predominantly at large-scale) covered the effects of competition in the three Douglas-fir progeny trials. While diameter at breast height at age 35 revealed strong competition effects at both genetic and environmental levels, these effects were not as strong for total height. In general, with strong competition genetic effects, the CSM gave a better fit than the simpler models. Ignoring competition effects and environmental heterogeneity resulted in lower additive genetic variances and higher residual variances than those estimated from the CSM. Ignoring competition effects leads to overestimating environmental heterogeneity, while ignoring the environmental heterogeneity leads to underestimating competition effects. Spearman correlations between BVs predicted from the simplest model and total BVs from the CSM were moderate to high. The implications of all these findings for the genetic improvement of coastal Douglas-fir in British Columbia are discussedFil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Stoehr, Michael U. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; CanadáFil: Chang-Yi, Xie. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; CanadáFil: Yanchuk, Alvin D. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá2017-10-17T14:47:02Z2017-10-17T14:47:02Z2016-12info:eu-repo/semantics/articleinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/1497https://link.springer.com/article/10.1007/s11295-016-1061-41614-2942 (Print)1614-2950 (Online)https://doi.org/10.1007/s11295-016-1061-4Tree genetics & genomes 12 (6) : 102. (December 2016)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/restrictedAccess2025-09-29T13:44:12Zoai:localhost:20.500.12123/1497instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:44:12.633INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse |
dc.title.none.fl_str_mv |
Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials |
title |
Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials |
spellingShingle |
Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials Cappa, Eduardo Pablo Arboles Forestales Forest Trees Genetics Environmental Factors Pseudotsuga Menziesii Genética Factores Ambientales |
title_short |
Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials |
title_full |
Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials |
title_fullStr |
Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials |
title_full_unstemmed |
Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials |
title_sort |
Identification and joint modeling of competition effects and environmental heterogeneity in three Douglas-fir (Pseudotsuga menziesii var. menziesii) trials |
dc.creator.none.fl_str_mv |
Cappa, Eduardo Pablo Stoehr, Michael U. Chang-Yi, Xie Yanchuk, Alvin D. |
author |
Cappa, Eduardo Pablo |
author_facet |
Cappa, Eduardo Pablo Stoehr, Michael U. Chang-Yi, Xie Yanchuk, Alvin D. |
author_role |
author |
author2 |
Stoehr, Michael U. Chang-Yi, Xie Yanchuk, Alvin D. |
author2_role |
author author author |
dc.subject.none.fl_str_mv |
Arboles Forestales Forest Trees Genetics Environmental Factors Pseudotsuga Menziesii Genética Factores Ambientales |
topic |
Arboles Forestales Forest Trees Genetics Environmental Factors Pseudotsuga Menziesii Genética Factores Ambientales |
dc.description.none.fl_txt_mv |
(Co)variance matrices for the assumed model, and thus the specification of the dispersion parameters, should take into account both the negative competition and the positive spatial correlations. In this context, we applied several approaches to identify and quantify the genetic and environmental competition effects and/or environmental heterogeneity in three Douglas-fir genetic trials from the British Columbia tree improvement program in total height and diameter at breast height at ages 12 and 35. Then, we applied an individual-tree mixed model to account jointly for competition effects and environmental heterogeneity (competition + spatial mixed model, CSM). We also compared the resulting estimates of all dispersion parameters and breeding values (BVs) with corresponding estimates from three simpler mixed models. Our analysis revealed that strong spatial environmental variation (predominantly at large-scale) covered the effects of competition in the three Douglas-fir progeny trials. While diameter at breast height at age 35 revealed strong competition effects at both genetic and environmental levels, these effects were not as strong for total height. In general, with strong competition genetic effects, the CSM gave a better fit than the simpler models. Ignoring competition effects and environmental heterogeneity resulted in lower additive genetic variances and higher residual variances than those estimated from the CSM. Ignoring competition effects leads to overestimating environmental heterogeneity, while ignoring the environmental heterogeneity leads to underestimating competition effects. Spearman correlations between BVs predicted from the simplest model and total BVs from the CSM were moderate to high. The implications of all these findings for the genetic improvement of coastal Douglas-fir in British Columbia are discussed Fil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Stoehr, Michael U. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá Fil: Chang-Yi, Xie. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá Fil: Yanchuk, Alvin D. British Columbia Ministry of Forests. Lands and Natural Resource Operations. Tree Improvement Branch; Canadá |
description |
(Co)variance matrices for the assumed model, and thus the specification of the dispersion parameters, should take into account both the negative competition and the positive spatial correlations. In this context, we applied several approaches to identify and quantify the genetic and environmental competition effects and/or environmental heterogeneity in three Douglas-fir genetic trials from the British Columbia tree improvement program in total height and diameter at breast height at ages 12 and 35. Then, we applied an individual-tree mixed model to account jointly for competition effects and environmental heterogeneity (competition + spatial mixed model, CSM). We also compared the resulting estimates of all dispersion parameters and breeding values (BVs) with corresponding estimates from three simpler mixed models. Our analysis revealed that strong spatial environmental variation (predominantly at large-scale) covered the effects of competition in the three Douglas-fir progeny trials. While diameter at breast height at age 35 revealed strong competition effects at both genetic and environmental levels, these effects were not as strong for total height. In general, with strong competition genetic effects, the CSM gave a better fit than the simpler models. Ignoring competition effects and environmental heterogeneity resulted in lower additive genetic variances and higher residual variances than those estimated from the CSM. Ignoring competition effects leads to overestimating environmental heterogeneity, while ignoring the environmental heterogeneity leads to underestimating competition effects. Spearman correlations between BVs predicted from the simplest model and total BVs from the CSM were moderate to high. The implications of all these findings for the genetic improvement of coastal Douglas-fir in British Columbia are discussed |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-12 2017-10-17T14:47:02Z 2017-10-17T14:47:02Z |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/acceptedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
acceptedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/20.500.12123/1497 https://link.springer.com/article/10.1007/s11295-016-1061-4 1614-2942 (Print) 1614-2950 (Online) https://doi.org/10.1007/s11295-016-1061-4 |
url |
http://hdl.handle.net/20.500.12123/1497 https://link.springer.com/article/10.1007/s11295-016-1061-4 https://doi.org/10.1007/s11295-016-1061-4 |
identifier_str_mv |
1614-2942 (Print) 1614-2950 (Online) |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/restrictedAccess |
eu_rights_str_mv |
restrictedAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
Tree genetics & genomes 12 (6) : 102. (December 2016) reponame:INTA Digital (INTA) instname:Instituto Nacional de Tecnología Agropecuaria |
reponame_str |
INTA Digital (INTA) |
collection |
INTA Digital (INTA) |
instname_str |
Instituto Nacional de Tecnología Agropecuaria |
repository.name.fl_str_mv |
INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria |
repository.mail.fl_str_mv |
tripaldi.nicolas@inta.gob.ar |
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1844619118305607680 |
score |
12.559606 |