Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy rice

Autores
Presotto, Alejandro Daniel; Hernández, Fernando; Vercellino, Roman Boris; Kruger, Raúl; Fontana, Maria Laura; Ureta, Maria Soledad; Crepy, Maria Andrea; Auge, Gabriela; Caicedo, Ana
Año de publicación
2024
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Weedy rice, a pervasive and troublesome weed found across the globe, has often evolved through fertilization of rice cultivars with little importance of crop-weed gene flow. In Argentina, weedy rice has been reported as an important constraint since the early 1970s, and, in the last few years, strains with herbicide-resistance are suspected to evolve. Despite their importance, the origin and genetic composition of Argentinian weedy rice as well its adaptation to agricultural environments has not been explored so far. To study this, we conducted genotyping-by-sequencing on samples of Argentinian weedy and cultivated rice and compared them with published data from weedy, cultivated and wild rice accessions distributed worldwide. In addition, we conducted a phenotypic characterization for weedy-related traits, a herbicide resistance screening and genotyped accessions for known mutations in the acetolactate synthase (ALS) gene, which confers herbicide resistance. Our results revealed large phenotypic variability in Argentinian weedy rice. Most strains were resistant to ALS-inhibiting herbicides with a high frequency of the ALS mutation (A122T) present in Argentinian rice cultivars. Argentinian cultivars belonged to the three major genetic groups of rice: japonica, indica and aus while weeds were mostly aus or aus-indica admixed, resembling weedy rice strains from the Southern Cone region. Phylogenetic analysis supports a single origin for aus-like South American weeds, likely as seed contaminants from the United States, and then admixture with local indica cultivars. Our findings demonstrate that crop to weed introgression can facilitate rapid adaptation to agriculture environments.
EEA Corrientes
Fil: Presotto, Alejandro Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Presotto, Alejandro Daniel. Universidad Nacional del Sur. Departamento de Agronomía. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Hernández, Fernando. University of British Columbia. Department of Botany and Biodiversity Research Centre; Canadá
Fil: Vercellino, Roman B. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Vercellino, Roman B. Universidad Nacional del Sur. Departamento de Agronomía. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Kruger, Raúl. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Corrientes; Argentina
Fil: Fontana, María Laura. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Corrientes; Argentina
Fil: Ureta, Maria Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Ureta, Maria Soledad. Universidad Nacional del Sur. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Crepy, Maria Andrea. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Concepción del Uruguay; Argentina
Fil: Crepy, Maria Andrea. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Auge, Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Agrobiotecnología y Biología Molecular; Argentina.
Fil: Caicedo, Ana. University of Massachusetts Amherst. Department of Biology; Estados Unidos
Fuente
Molecular Ecology : e17368. (First published: 27 April 2024)
Materia
Arroz
Variedades
Malezas
Resistencia a los Herbicidas
Escarda
Argentina
Rice
Varieties
Weeds
Herbicide Resistance
Weed Control
Introgression
Introgresión
Control de Malezas
Nivel de accesibilidad
acceso restringido
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/17586
Acceder
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oai_identifier_str oai:localhost:20.500.12123/17586
network_acronym_str INTADig
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network_name_str INTA Digital (INTA)
spelling Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy ricePresotto, Alejandro DanielHernández, FernandoVercellino, Roman BorisKruger, RaúlFontana, Maria LauraUreta, Maria SoledadCrepy, Maria AndreaAuge, GabrielaCaicedo, AnaArrozVariedadesMalezasResistencia a los HerbicidasEscardaArgentinaRiceVarietiesWeedsHerbicide ResistanceWeed ControlIntrogressionIntrogresiónControl de MalezasWeedy rice, a pervasive and troublesome weed found across the globe, has often evolved through fertilization of rice cultivars with little importance of crop-weed gene flow. In Argentina, weedy rice has been reported as an important constraint since the early 1970s, and, in the last few years, strains with herbicide-resistance are suspected to evolve. Despite their importance, the origin and genetic composition of Argentinian weedy rice as well its adaptation to agricultural environments has not been explored so far. To study this, we conducted genotyping-by-sequencing on samples of Argentinian weedy and cultivated rice and compared them with published data from weedy, cultivated and wild rice accessions distributed worldwide. In addition, we conducted a phenotypic characterization for weedy-related traits, a herbicide resistance screening and genotyped accessions for known mutations in the acetolactate synthase (ALS) gene, which confers herbicide resistance. Our results revealed large phenotypic variability in Argentinian weedy rice. Most strains were resistant to ALS-inhibiting herbicides with a high frequency of the ALS mutation (A122T) present in Argentinian rice cultivars. Argentinian cultivars belonged to the three major genetic groups of rice: japonica, indica and aus while weeds were mostly aus or aus-indica admixed, resembling weedy rice strains from the Southern Cone region. Phylogenetic analysis supports a single origin for aus-like South American weeds, likely as seed contaminants from the United States, and then admixture with local indica cultivars. Our findings demonstrate that crop to weed introgression can facilitate rapid adaptation to agriculture environments.EEA CorrientesFil: Presotto, Alejandro Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida; ArgentinaFil: Presotto, Alejandro Daniel. Universidad Nacional del Sur. Departamento de Agronomía. Centro de Recursos Naturales Renovables de la Zona Semiárida; ArgentinaFil: Hernández, Fernando. University of British Columbia. Department of Botany and Biodiversity Research Centre; CanadáFil: Vercellino, Roman B. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida; ArgentinaFil: Vercellino, Roman B. Universidad Nacional del Sur. Departamento de Agronomía. Centro de Recursos Naturales Renovables de la Zona Semiárida; ArgentinaFil: Kruger, Raúl. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Corrientes; ArgentinaFil: Fontana, María Laura. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Corrientes; ArgentinaFil: Ureta, Maria Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida; ArgentinaFil: Ureta, Maria Soledad. Universidad Nacional del Sur. Centro de Recursos Naturales Renovables de la Zona Semiárida; ArgentinaFil: Crepy, Maria Andrea. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Concepción del Uruguay; ArgentinaFil: Crepy, Maria Andrea. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Auge, Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Agrobiotecnología y Biología Molecular; Argentina.Fil: Caicedo, Ana. University of Massachusetts Amherst. Department of Biology; Estados UnidosWiley2024-04-30T12:21:06Z2024-04-30T12:21:06Z2024-04-27info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/17586https://onlinelibrary.wiley.com/doi/10.1111/mec.173680962-10831365-294Xhttps://doi.org/10.1111/mec.17368Molecular Ecology : e17368. (First published: 27 April 2024)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología AgropecuariaengArgentina .......... (nation) (World, South America)7006477info:eu-repo/semantics/restrictedAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-11T10:25:04Zoai:localhost:20.500.12123/17586instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-11 10:25:04.684INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy rice
title Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy rice
spellingShingle Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy rice
Presotto, Alejandro Daniel
Arroz
Variedades
Malezas
Resistencia a los Herbicidas
Escarda
Argentina
Rice
Varieties
Weeds
Herbicide Resistance
Weed Control
Introgression
Introgresión
Control de Malezas
title_short Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy rice
title_full Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy rice
title_fullStr Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy rice
title_full_unstemmed Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy rice
title_sort Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy rice
dc.creator.none.fl_str_mv Presotto, Alejandro Daniel
Hernández, Fernando
Vercellino, Roman Boris
Kruger, Raúl
Fontana, Maria Laura
Ureta, Maria Soledad
Crepy, Maria Andrea
Auge, Gabriela
Caicedo, Ana
author Presotto, Alejandro Daniel
author_facet Presotto, Alejandro Daniel
Hernández, Fernando
Vercellino, Roman Boris
Kruger, Raúl
Fontana, Maria Laura
Ureta, Maria Soledad
Crepy, Maria Andrea
Auge, Gabriela
Caicedo, Ana
author_role author
author2 Hernández, Fernando
Vercellino, Roman Boris
Kruger, Raúl
Fontana, Maria Laura
Ureta, Maria Soledad
Crepy, Maria Andrea
Auge, Gabriela
Caicedo, Ana
author2_role author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Arroz
Variedades
Malezas
Resistencia a los Herbicidas
Escarda
Argentina
Rice
Varieties
Weeds
Herbicide Resistance
Weed Control
Introgression
Introgresión
Control de Malezas
topic Arroz
Variedades
Malezas
Resistencia a los Herbicidas
Escarda
Argentina
Rice
Varieties
Weeds
Herbicide Resistance
Weed Control
Introgression
Introgresión
Control de Malezas
dc.description.none.fl_txt_mv Weedy rice, a pervasive and troublesome weed found across the globe, has often evolved through fertilization of rice cultivars with little importance of crop-weed gene flow. In Argentina, weedy rice has been reported as an important constraint since the early 1970s, and, in the last few years, strains with herbicide-resistance are suspected to evolve. Despite their importance, the origin and genetic composition of Argentinian weedy rice as well its adaptation to agricultural environments has not been explored so far. To study this, we conducted genotyping-by-sequencing on samples of Argentinian weedy and cultivated rice and compared them with published data from weedy, cultivated and wild rice accessions distributed worldwide. In addition, we conducted a phenotypic characterization for weedy-related traits, a herbicide resistance screening and genotyped accessions for known mutations in the acetolactate synthase (ALS) gene, which confers herbicide resistance. Our results revealed large phenotypic variability in Argentinian weedy rice. Most strains were resistant to ALS-inhibiting herbicides with a high frequency of the ALS mutation (A122T) present in Argentinian rice cultivars. Argentinian cultivars belonged to the three major genetic groups of rice: japonica, indica and aus while weeds were mostly aus or aus-indica admixed, resembling weedy rice strains from the Southern Cone region. Phylogenetic analysis supports a single origin for aus-like South American weeds, likely as seed contaminants from the United States, and then admixture with local indica cultivars. Our findings demonstrate that crop to weed introgression can facilitate rapid adaptation to agriculture environments.
EEA Corrientes
Fil: Presotto, Alejandro Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Presotto, Alejandro Daniel. Universidad Nacional del Sur. Departamento de Agronomía. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Hernández, Fernando. University of British Columbia. Department of Botany and Biodiversity Research Centre; Canadá
Fil: Vercellino, Roman B. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Vercellino, Roman B. Universidad Nacional del Sur. Departamento de Agronomía. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Kruger, Raúl. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Corrientes; Argentina
Fil: Fontana, María Laura. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Corrientes; Argentina
Fil: Ureta, Maria Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Ureta, Maria Soledad. Universidad Nacional del Sur. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina
Fil: Crepy, Maria Andrea. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Concepción del Uruguay; Argentina
Fil: Crepy, Maria Andrea. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Auge, Gabriela. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Agrobiotecnología y Biología Molecular; Argentina.
Fil: Caicedo, Ana. University of Massachusetts Amherst. Department of Biology; Estados Unidos
description Weedy rice, a pervasive and troublesome weed found across the globe, has often evolved through fertilization of rice cultivars with little importance of crop-weed gene flow. In Argentina, weedy rice has been reported as an important constraint since the early 1970s, and, in the last few years, strains with herbicide-resistance are suspected to evolve. Despite their importance, the origin and genetic composition of Argentinian weedy rice as well its adaptation to agricultural environments has not been explored so far. To study this, we conducted genotyping-by-sequencing on samples of Argentinian weedy and cultivated rice and compared them with published data from weedy, cultivated and wild rice accessions distributed worldwide. In addition, we conducted a phenotypic characterization for weedy-related traits, a herbicide resistance screening and genotyped accessions for known mutations in the acetolactate synthase (ALS) gene, which confers herbicide resistance. Our results revealed large phenotypic variability in Argentinian weedy rice. Most strains were resistant to ALS-inhibiting herbicides with a high frequency of the ALS mutation (A122T) present in Argentinian rice cultivars. Argentinian cultivars belonged to the three major genetic groups of rice: japonica, indica and aus while weeds were mostly aus or aus-indica admixed, resembling weedy rice strains from the Southern Cone region. Phylogenetic analysis supports a single origin for aus-like South American weeds, likely as seed contaminants from the United States, and then admixture with local indica cultivars. Our findings demonstrate that crop to weed introgression can facilitate rapid adaptation to agriculture environments.
publishDate 2024
dc.date.none.fl_str_mv 2024-04-30T12:21:06Z
2024-04-30T12:21:06Z
2024-04-27
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/17586
https://onlinelibrary.wiley.com/doi/10.1111/mec.17368
0962-1083
1365-294X
https://doi.org/10.1111/mec.17368
url http://hdl.handle.net/20.500.12123/17586
https://onlinelibrary.wiley.com/doi/10.1111/mec.17368
https://doi.org/10.1111/mec.17368
identifier_str_mv 0962-1083
1365-294X
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/restrictedAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv restrictedAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.coverage.none.fl_str_mv Argentina .......... (nation) (World, South America)
7006477
dc.publisher.none.fl_str_mv Wiley
publisher.none.fl_str_mv Wiley
dc.source.none.fl_str_mv Molecular Ecology : e17368. (First published: 27 April 2024)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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