Application of iPBS-retrotransposons markers for the assessment of genetic diversity and population structure among sugar beet (Beta vulgaris) germplasm from different regions of t...

Autores
Sadık, Gökhan; Yildiz, Mehtap; Taşkın, Bilgin; Koçak, Metin; Cavagnaro, Pablo; Baloch, Faheem Shehzad
Año de publicación
2025
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Sugar beet is an important agricultural crop product that has been produced and consumed worldwide since the eighteenth century and can adapt to various climatic and soil conditions. The two fundamental building blocks of any crop improvement program are germplasm resources, which contain genetic diversity and phenotypic expression of desired traits. In this study, a total of 58 sugar beet genotypes including 12 from Turkey, 4 from India, 12 from the United States of America, 16 from Iran, 12 from England and Beta vulgaris L. subsp. maritima L. Arcang. as wild species were characterized using 15 inter-primer binding site (iPBS) markers that produced intense and polymorphic bands in the germplasm library. Using these 15 iPBS markers, 102 polymorphic bands were produced and the average number of polymorphic bands was determined as 6.8. Polymorphism information content (PIC) values ranged between 0.58 and 0.83, and the average PIC value was found to be 0.70. It was determined that the most genetically different genotypes were PI 590697-US11 and PI 171508-TR8, with a distance of 0.73. Clustering algorithms Unweighted Pair Group Method Algorithm (UPGMA) and Principal Coordinate Algorithm (PCoA) confirmed that genotypes are an important factor in clustering, and STRUCTURE analysis divided sugar beet gene resources into six populations. Also, the analysis of molecular variance (AMOVA) showed that there was 8% variance among populations and 92% variance within populations. This is the first study to investigate the genetic diversity and population structure of sugar beet germplasm using the iPBS-retrotransposon marker system. The results of this research emphasized that iPBS markers are very successful and effective in examining the genetic diversity of sugar beet germplasm. The results obtained in this study provide a theoretical basis for future selection and breeding of superior sugar beet germplasm sources.
EEA Mendoza
Fil: Sadık, Gökhan. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; Turquía
Fil: Yıldız, Mehtap. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; Turquía
Fil: Taşkın, Bilgin. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; Turquía
Fil: Koçak, Metin. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; Turquía
Fil: Cavagnaro, Pablo Federico. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Mendoza; Argentina
Fil: Cavagnaro, Pablo Federico. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Cavagnaro, Pablo Federico. University of Agriculture in Krakow. Faculty of Biotechnology and Horticulture. Department of Plant Biology, and Biotechnology; Polonia
Fil: Baloch, Faheem Shehzad. Mersin University. Faculty of Sciences; Turquía
Fuente
Genetic Resources and Crop Evolution 72 (3) : 3039-3049. (2025)
Materia
Remolacha Azucarera
Germoplasma
Marcadores Genéticos
Diversidad genética (recurso)
Sugar Beet
Beta vulgaris
Germplasm
Genetic Markers
Genetic Diversity (resource)
Marcadores Moleculares
Nivel de accesibilidad
acceso restringido
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/23799

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network_name_str INTA Digital (INTA)
spelling Application of iPBS-retrotransposons markers for the assessment of genetic diversity and population structure among sugar beet (Beta vulgaris) germplasm from different regions of the worldSadık, GökhanYildiz, MehtapTaşkın, BilginKoçak, MetinCavagnaro, PabloBaloch, Faheem ShehzadRemolacha AzucareraGermoplasmaMarcadores GenéticosDiversidad genética (recurso)Sugar BeetBeta vulgarisGermplasmGenetic MarkersGenetic Diversity (resource)Marcadores MolecularesSugar beet is an important agricultural crop product that has been produced and consumed worldwide since the eighteenth century and can adapt to various climatic and soil conditions. The two fundamental building blocks of any crop improvement program are germplasm resources, which contain genetic diversity and phenotypic expression of desired traits. In this study, a total of 58 sugar beet genotypes including 12 from Turkey, 4 from India, 12 from the United States of America, 16 from Iran, 12 from England and Beta vulgaris L. subsp. maritima L. Arcang. as wild species were characterized using 15 inter-primer binding site (iPBS) markers that produced intense and polymorphic bands in the germplasm library. Using these 15 iPBS markers, 102 polymorphic bands were produced and the average number of polymorphic bands was determined as 6.8. Polymorphism information content (PIC) values ranged between 0.58 and 0.83, and the average PIC value was found to be 0.70. It was determined that the most genetically different genotypes were PI 590697-US11 and PI 171508-TR8, with a distance of 0.73. Clustering algorithms Unweighted Pair Group Method Algorithm (UPGMA) and Principal Coordinate Algorithm (PCoA) confirmed that genotypes are an important factor in clustering, and STRUCTURE analysis divided sugar beet gene resources into six populations. Also, the analysis of molecular variance (AMOVA) showed that there was 8% variance among populations and 92% variance within populations. This is the first study to investigate the genetic diversity and population structure of sugar beet germplasm using the iPBS-retrotransposon marker system. The results of this research emphasized that iPBS markers are very successful and effective in examining the genetic diversity of sugar beet germplasm. The results obtained in this study provide a theoretical basis for future selection and breeding of superior sugar beet germplasm sources.EEA MendozaFil: Sadık, Gökhan. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; TurquíaFil: Yıldız, Mehtap. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; TurquíaFil: Taşkın, Bilgin. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; TurquíaFil: Koçak, Metin. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; TurquíaFil: Cavagnaro, Pablo Federico. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Mendoza; ArgentinaFil: Cavagnaro, Pablo Federico. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Cavagnaro, Pablo Federico. University of Agriculture in Krakow. Faculty of Biotechnology and Horticulture. Department of Plant Biology, and Biotechnology; PoloniaFil: Baloch, Faheem Shehzad. Mersin University. Faculty of Sciences; TurquíaSpringer2025-09-12T14:37:24Z2025-09-12T14:37:24Z2025-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/23799https://link.springer.com/article/10.1007/s10722-024-02148-30925-98641573-5109https://doi.org/10.1007/s10722-024-02148-3Genetic Resources and Crop Evolution 72 (3) : 3039-3049. (2025)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/restrictedAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-29T13:47:31Zoai:localhost:20.500.12123/23799instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:47:32.212INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Application of iPBS-retrotransposons markers for the assessment of genetic diversity and population structure among sugar beet (Beta vulgaris) germplasm from different regions of the world
title Application of iPBS-retrotransposons markers for the assessment of genetic diversity and population structure among sugar beet (Beta vulgaris) germplasm from different regions of the world
spellingShingle Application of iPBS-retrotransposons markers for the assessment of genetic diversity and population structure among sugar beet (Beta vulgaris) germplasm from different regions of the world
Sadık, Gökhan
Remolacha Azucarera
Germoplasma
Marcadores Genéticos
Diversidad genética (recurso)
Sugar Beet
Beta vulgaris
Germplasm
Genetic Markers
Genetic Diversity (resource)
Marcadores Moleculares
title_short Application of iPBS-retrotransposons markers for the assessment of genetic diversity and population structure among sugar beet (Beta vulgaris) germplasm from different regions of the world
title_full Application of iPBS-retrotransposons markers for the assessment of genetic diversity and population structure among sugar beet (Beta vulgaris) germplasm from different regions of the world
title_fullStr Application of iPBS-retrotransposons markers for the assessment of genetic diversity and population structure among sugar beet (Beta vulgaris) germplasm from different regions of the world
title_full_unstemmed Application of iPBS-retrotransposons markers for the assessment of genetic diversity and population structure among sugar beet (Beta vulgaris) germplasm from different regions of the world
title_sort Application of iPBS-retrotransposons markers for the assessment of genetic diversity and population structure among sugar beet (Beta vulgaris) germplasm from different regions of the world
dc.creator.none.fl_str_mv Sadık, Gökhan
Yildiz, Mehtap
Taşkın, Bilgin
Koçak, Metin
Cavagnaro, Pablo
Baloch, Faheem Shehzad
author Sadık, Gökhan
author_facet Sadık, Gökhan
Yildiz, Mehtap
Taşkın, Bilgin
Koçak, Metin
Cavagnaro, Pablo
Baloch, Faheem Shehzad
author_role author
author2 Yildiz, Mehtap
Taşkın, Bilgin
Koçak, Metin
Cavagnaro, Pablo
Baloch, Faheem Shehzad
author2_role author
author
author
author
author
dc.subject.none.fl_str_mv Remolacha Azucarera
Germoplasma
Marcadores Genéticos
Diversidad genética (recurso)
Sugar Beet
Beta vulgaris
Germplasm
Genetic Markers
Genetic Diversity (resource)
Marcadores Moleculares
topic Remolacha Azucarera
Germoplasma
Marcadores Genéticos
Diversidad genética (recurso)
Sugar Beet
Beta vulgaris
Germplasm
Genetic Markers
Genetic Diversity (resource)
Marcadores Moleculares
dc.description.none.fl_txt_mv Sugar beet is an important agricultural crop product that has been produced and consumed worldwide since the eighteenth century and can adapt to various climatic and soil conditions. The two fundamental building blocks of any crop improvement program are germplasm resources, which contain genetic diversity and phenotypic expression of desired traits. In this study, a total of 58 sugar beet genotypes including 12 from Turkey, 4 from India, 12 from the United States of America, 16 from Iran, 12 from England and Beta vulgaris L. subsp. maritima L. Arcang. as wild species were characterized using 15 inter-primer binding site (iPBS) markers that produced intense and polymorphic bands in the germplasm library. Using these 15 iPBS markers, 102 polymorphic bands were produced and the average number of polymorphic bands was determined as 6.8. Polymorphism information content (PIC) values ranged between 0.58 and 0.83, and the average PIC value was found to be 0.70. It was determined that the most genetically different genotypes were PI 590697-US11 and PI 171508-TR8, with a distance of 0.73. Clustering algorithms Unweighted Pair Group Method Algorithm (UPGMA) and Principal Coordinate Algorithm (PCoA) confirmed that genotypes are an important factor in clustering, and STRUCTURE analysis divided sugar beet gene resources into six populations. Also, the analysis of molecular variance (AMOVA) showed that there was 8% variance among populations and 92% variance within populations. This is the first study to investigate the genetic diversity and population structure of sugar beet germplasm using the iPBS-retrotransposon marker system. The results of this research emphasized that iPBS markers are very successful and effective in examining the genetic diversity of sugar beet germplasm. The results obtained in this study provide a theoretical basis for future selection and breeding of superior sugar beet germplasm sources.
EEA Mendoza
Fil: Sadık, Gökhan. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; Turquía
Fil: Yıldız, Mehtap. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; Turquía
Fil: Taşkın, Bilgin. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; Turquía
Fil: Koçak, Metin. Van Yuzuncu Yil University. Faculty of Agriculture. Department of Agricultural Biotechnology; Turquía
Fil: Cavagnaro, Pablo Federico. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Mendoza; Argentina
Fil: Cavagnaro, Pablo Federico. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Cavagnaro, Pablo Federico. University of Agriculture in Krakow. Faculty of Biotechnology and Horticulture. Department of Plant Biology, and Biotechnology; Polonia
Fil: Baloch, Faheem Shehzad. Mersin University. Faculty of Sciences; Turquía
description Sugar beet is an important agricultural crop product that has been produced and consumed worldwide since the eighteenth century and can adapt to various climatic and soil conditions. The two fundamental building blocks of any crop improvement program are germplasm resources, which contain genetic diversity and phenotypic expression of desired traits. In this study, a total of 58 sugar beet genotypes including 12 from Turkey, 4 from India, 12 from the United States of America, 16 from Iran, 12 from England and Beta vulgaris L. subsp. maritima L. Arcang. as wild species were characterized using 15 inter-primer binding site (iPBS) markers that produced intense and polymorphic bands in the germplasm library. Using these 15 iPBS markers, 102 polymorphic bands were produced and the average number of polymorphic bands was determined as 6.8. Polymorphism information content (PIC) values ranged between 0.58 and 0.83, and the average PIC value was found to be 0.70. It was determined that the most genetically different genotypes were PI 590697-US11 and PI 171508-TR8, with a distance of 0.73. Clustering algorithms Unweighted Pair Group Method Algorithm (UPGMA) and Principal Coordinate Algorithm (PCoA) confirmed that genotypes are an important factor in clustering, and STRUCTURE analysis divided sugar beet gene resources into six populations. Also, the analysis of molecular variance (AMOVA) showed that there was 8% variance among populations and 92% variance within populations. This is the first study to investigate the genetic diversity and population structure of sugar beet germplasm using the iPBS-retrotransposon marker system. The results of this research emphasized that iPBS markers are very successful and effective in examining the genetic diversity of sugar beet germplasm. The results obtained in this study provide a theoretical basis for future selection and breeding of superior sugar beet germplasm sources.
publishDate 2025
dc.date.none.fl_str_mv 2025-09-12T14:37:24Z
2025-09-12T14:37:24Z
2025-03
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/23799
https://link.springer.com/article/10.1007/s10722-024-02148-3
0925-9864
1573-5109
https://doi.org/10.1007/s10722-024-02148-3
url http://hdl.handle.net/20.500.12123/23799
https://link.springer.com/article/10.1007/s10722-024-02148-3
https://doi.org/10.1007/s10722-024-02148-3
identifier_str_mv 0925-9864
1573-5109
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/restrictedAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv restrictedAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv Genetic Resources and Crop Evolution 72 (3) : 3039-3049. (2025)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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