Genetic structure and ecological niche space of lentil's closest wild relative, Lens orientalis (Boiss.) Schmalh.

Autores
Guerra-García, Azalea; Trněný, Oldřich; Brus, Jan; Renzi Pugni, Juan Pablo; Kumar, Shiv; Bariotakis, Michael; Coyne, Clarice; Chitikineni, Anu; Bett, Kirstin E.; Varshney, Rajeev; Pirintsos, Stergios; Berger, Jens; von Wettberg, Eric J.B.; Smýkal, Petr
Año de publicación
2024
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Crops arose from wild ancestors and to understand their domestication it is essential to compare the cultivated species with their crop wild relatives. These represent an important source of further crop improvement, in particular in relation to climate change. Although there are about 58,000 Lens accessions held in genebanks, only 1% are wild. We examined the geographic distribution and genetic diversity of the lentil's immediate progenitor L. orientalis. We used Genotyping by Sequencing (GBS) to identify and characterize differentiation among accessions held at germplasm collections. We then determined whether genetically distinct clusters of accessions had been collected from climatically distinct locations. Of the 195 genotyped accessions, 124 were genuine L. orientalis with four identified genetic groups. Although an environmental distance matrix was significantly correlated with geographic distance in a Mantel test, the four identified genetic clusters were not found to occupy significantly different environmental space. Maxent modelling gave a distinct predicted distribution pattern centred in the Fertile Crescent, with intermediate probabilities of occurrence in parts of Turkey, Greece, Cyprus, Morocco, and the south of the Iberian Peninsula with NW Africa. Future projections did not show any dramatic alterations in the distribution according to the climate change scenarios tested. We have found considerable diversity in L. orientalis, some of which track climatic variability. The results of the study showed the genetic diversity of wild lentil and indicate the importance of ongoing collections and in situ conservation for our future capacity to harness the genetic variation of the lentil progenitor.
EEA Hilario Ascasubi
Fil: Guerra-García, Azalea. University of Saskatchewan. Department of Plant Sciences; Canadá
Fil: Guerra-García, Azalea. Instituto Politécnico Nacional. Centro de Investigación y de Estudios Avanzados. Departamento de Biotecnología y Bioquímica; México
Fil: Trněný, Oldřich. Agriculture Research Ltd; República Checa
Fil: Brus, Jan. Palacký University. Faculty of Sciences. Department of Geoinformatics; República Checa
Fil: Renzi Pugni, Juan Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Hilario Ascasubi; Argentina
Fil: Kumar, Shiv. International Center for Agricultural Research in the Dry Areas (ICARDA); Marruecos
Fil: Bariotakis, Michael. University of Crete. Department of Biology; Grecia
Fil: Bariotakis, Michael. Botanical Garden Rethymnon; Grecia
Fil: Coyne, Clarice. USDA-ARS. Western Regional Plant Introduction Station; Estados Unidos
Fil: Chitikineni, Anu. International Crop Research Institute for the semi-Arid Tropics (ICRISAT); India
Fil: Bett, Kirstin E. University of Saskatchewan. Department of Plant Sciences; Canadá
Fil: Varshney, Rajeev. International Crop Research Institute for the semi-Arid Tropics (ICRISAT); India
Fil: Varshney, Rajeev. Murdoch University; Australia
Fil: Pirintsos, Stergios. University of Crete. Department of Biology; Grecia
Fil: Berger, Jens. CSIRO Plant Industry; Australia
Fil: von Wettberg, Eric J.B. University of Vermont. Gund Institute for the Environment. Department of Plant and Soil Sciences; Estados Unidos
Fil: Smýkal, Petr. Palacký University. Faculty of Sciences. Department of Botany; República Checa
Fuente
Plant Biology 26 (2) : 232-244. (March 2024)
Materia
Lens
Lentils
Genetic Diversity (resource)
Ecological Niche Modelling
Crop Wild Relatives
Lenteja
Diversidad genética (recurso)
Modelización del Nicho Ecológico
Especie Silvestre Afín a las Plantas Cultivadas
Lens orientalis
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/22697

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oai_identifier_str oai:localhost:20.500.12123/22697
network_acronym_str INTADig
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network_name_str INTA Digital (INTA)
spelling Genetic structure and ecological niche space of lentil's closest wild relative, Lens orientalis (Boiss.) Schmalh.Guerra-García, AzaleaTrněný, OldřichBrus, JanRenzi Pugni, Juan PabloKumar, ShivBariotakis, MichaelCoyne, ClariceChitikineni, AnuBett, Kirstin E.Varshney, RajeevPirintsos, StergiosBerger, Jensvon Wettberg, Eric J.B.Smýkal, PetrLensLentilsGenetic Diversity (resource)Ecological Niche ModellingCrop Wild RelativesLentejaDiversidad genética (recurso)Modelización del Nicho EcológicoEspecie Silvestre Afín a las Plantas CultivadasLens orientalisCrops arose from wild ancestors and to understand their domestication it is essential to compare the cultivated species with their crop wild relatives. These represent an important source of further crop improvement, in particular in relation to climate change. Although there are about 58,000 Lens accessions held in genebanks, only 1% are wild. We examined the geographic distribution and genetic diversity of the lentil's immediate progenitor L. orientalis. We used Genotyping by Sequencing (GBS) to identify and characterize differentiation among accessions held at germplasm collections. We then determined whether genetically distinct clusters of accessions had been collected from climatically distinct locations. Of the 195 genotyped accessions, 124 were genuine L. orientalis with four identified genetic groups. Although an environmental distance matrix was significantly correlated with geographic distance in a Mantel test, the four identified genetic clusters were not found to occupy significantly different environmental space. Maxent modelling gave a distinct predicted distribution pattern centred in the Fertile Crescent, with intermediate probabilities of occurrence in parts of Turkey, Greece, Cyprus, Morocco, and the south of the Iberian Peninsula with NW Africa. Future projections did not show any dramatic alterations in the distribution according to the climate change scenarios tested. We have found considerable diversity in L. orientalis, some of which track climatic variability. The results of the study showed the genetic diversity of wild lentil and indicate the importance of ongoing collections and in situ conservation for our future capacity to harness the genetic variation of the lentil progenitor.EEA Hilario AscasubiFil: Guerra-García, Azalea. University of Saskatchewan. Department of Plant Sciences; CanadáFil: Guerra-García, Azalea. Instituto Politécnico Nacional. Centro de Investigación y de Estudios Avanzados. Departamento de Biotecnología y Bioquímica; MéxicoFil: Trněný, Oldřich. Agriculture Research Ltd; República ChecaFil: Brus, Jan. Palacký University. Faculty of Sciences. Department of Geoinformatics; República ChecaFil: Renzi Pugni, Juan Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Hilario Ascasubi; ArgentinaFil: Kumar, Shiv. International Center for Agricultural Research in the Dry Areas (ICARDA); MarruecosFil: Bariotakis, Michael. University of Crete. Department of Biology; GreciaFil: Bariotakis, Michael. Botanical Garden Rethymnon; GreciaFil: Coyne, Clarice. USDA-ARS. Western Regional Plant Introduction Station; Estados UnidosFil: Chitikineni, Anu. International Crop Research Institute for the semi-Arid Tropics (ICRISAT); IndiaFil: Bett, Kirstin E. University of Saskatchewan. Department of Plant Sciences; CanadáFil: Varshney, Rajeev. International Crop Research Institute for the semi-Arid Tropics (ICRISAT); IndiaFil: Varshney, Rajeev. Murdoch University; AustraliaFil: Pirintsos, Stergios. University of Crete. Department of Biology; GreciaFil: Berger, Jens. CSIRO Plant Industry; AustraliaFil: von Wettberg, Eric J.B. University of Vermont. Gund Institute for the Environment. Department of Plant and Soil Sciences; Estados UnidosFil: Smýkal, Petr. Palacký University. Faculty of Sciences. Department of Botany; República ChecaWiley2025-06-17T11:08:08Z2025-06-17T11:08:08Z2024-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/22697https://onlinelibrary.wiley.com/doi/full/10.1111/plb.136151435-86031438-8677https://doi.org/10.1111/plb.13615Plant Biology 26 (2) : 232-244. (March 2024)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-29T13:47:21Zoai:localhost:20.500.12123/22697instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:47:22.285INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Genetic structure and ecological niche space of lentil's closest wild relative, Lens orientalis (Boiss.) Schmalh.
title Genetic structure and ecological niche space of lentil's closest wild relative, Lens orientalis (Boiss.) Schmalh.
spellingShingle Genetic structure and ecological niche space of lentil's closest wild relative, Lens orientalis (Boiss.) Schmalh.
Guerra-García, Azalea
Lens
Lentils
Genetic Diversity (resource)
Ecological Niche Modelling
Crop Wild Relatives
Lenteja
Diversidad genética (recurso)
Modelización del Nicho Ecológico
Especie Silvestre Afín a las Plantas Cultivadas
Lens orientalis
title_short Genetic structure and ecological niche space of lentil's closest wild relative, Lens orientalis (Boiss.) Schmalh.
title_full Genetic structure and ecological niche space of lentil's closest wild relative, Lens orientalis (Boiss.) Schmalh.
title_fullStr Genetic structure and ecological niche space of lentil's closest wild relative, Lens orientalis (Boiss.) Schmalh.
title_full_unstemmed Genetic structure and ecological niche space of lentil's closest wild relative, Lens orientalis (Boiss.) Schmalh.
title_sort Genetic structure and ecological niche space of lentil's closest wild relative, Lens orientalis (Boiss.) Schmalh.
dc.creator.none.fl_str_mv Guerra-García, Azalea
Trněný, Oldřich
Brus, Jan
Renzi Pugni, Juan Pablo
Kumar, Shiv
Bariotakis, Michael
Coyne, Clarice
Chitikineni, Anu
Bett, Kirstin E.
Varshney, Rajeev
Pirintsos, Stergios
Berger, Jens
von Wettberg, Eric J.B.
Smýkal, Petr
author Guerra-García, Azalea
author_facet Guerra-García, Azalea
Trněný, Oldřich
Brus, Jan
Renzi Pugni, Juan Pablo
Kumar, Shiv
Bariotakis, Michael
Coyne, Clarice
Chitikineni, Anu
Bett, Kirstin E.
Varshney, Rajeev
Pirintsos, Stergios
Berger, Jens
von Wettberg, Eric J.B.
Smýkal, Petr
author_role author
author2 Trněný, Oldřich
Brus, Jan
Renzi Pugni, Juan Pablo
Kumar, Shiv
Bariotakis, Michael
Coyne, Clarice
Chitikineni, Anu
Bett, Kirstin E.
Varshney, Rajeev
Pirintsos, Stergios
Berger, Jens
von Wettberg, Eric J.B.
Smýkal, Petr
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Lens
Lentils
Genetic Diversity (resource)
Ecological Niche Modelling
Crop Wild Relatives
Lenteja
Diversidad genética (recurso)
Modelización del Nicho Ecológico
Especie Silvestre Afín a las Plantas Cultivadas
Lens orientalis
topic Lens
Lentils
Genetic Diversity (resource)
Ecological Niche Modelling
Crop Wild Relatives
Lenteja
Diversidad genética (recurso)
Modelización del Nicho Ecológico
Especie Silvestre Afín a las Plantas Cultivadas
Lens orientalis
dc.description.none.fl_txt_mv Crops arose from wild ancestors and to understand their domestication it is essential to compare the cultivated species with their crop wild relatives. These represent an important source of further crop improvement, in particular in relation to climate change. Although there are about 58,000 Lens accessions held in genebanks, only 1% are wild. We examined the geographic distribution and genetic diversity of the lentil's immediate progenitor L. orientalis. We used Genotyping by Sequencing (GBS) to identify and characterize differentiation among accessions held at germplasm collections. We then determined whether genetically distinct clusters of accessions had been collected from climatically distinct locations. Of the 195 genotyped accessions, 124 were genuine L. orientalis with four identified genetic groups. Although an environmental distance matrix was significantly correlated with geographic distance in a Mantel test, the four identified genetic clusters were not found to occupy significantly different environmental space. Maxent modelling gave a distinct predicted distribution pattern centred in the Fertile Crescent, with intermediate probabilities of occurrence in parts of Turkey, Greece, Cyprus, Morocco, and the south of the Iberian Peninsula with NW Africa. Future projections did not show any dramatic alterations in the distribution according to the climate change scenarios tested. We have found considerable diversity in L. orientalis, some of which track climatic variability. The results of the study showed the genetic diversity of wild lentil and indicate the importance of ongoing collections and in situ conservation for our future capacity to harness the genetic variation of the lentil progenitor.
EEA Hilario Ascasubi
Fil: Guerra-García, Azalea. University of Saskatchewan. Department of Plant Sciences; Canadá
Fil: Guerra-García, Azalea. Instituto Politécnico Nacional. Centro de Investigación y de Estudios Avanzados. Departamento de Biotecnología y Bioquímica; México
Fil: Trněný, Oldřich. Agriculture Research Ltd; República Checa
Fil: Brus, Jan. Palacký University. Faculty of Sciences. Department of Geoinformatics; República Checa
Fil: Renzi Pugni, Juan Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Hilario Ascasubi; Argentina
Fil: Kumar, Shiv. International Center for Agricultural Research in the Dry Areas (ICARDA); Marruecos
Fil: Bariotakis, Michael. University of Crete. Department of Biology; Grecia
Fil: Bariotakis, Michael. Botanical Garden Rethymnon; Grecia
Fil: Coyne, Clarice. USDA-ARS. Western Regional Plant Introduction Station; Estados Unidos
Fil: Chitikineni, Anu. International Crop Research Institute for the semi-Arid Tropics (ICRISAT); India
Fil: Bett, Kirstin E. University of Saskatchewan. Department of Plant Sciences; Canadá
Fil: Varshney, Rajeev. International Crop Research Institute for the semi-Arid Tropics (ICRISAT); India
Fil: Varshney, Rajeev. Murdoch University; Australia
Fil: Pirintsos, Stergios. University of Crete. Department of Biology; Grecia
Fil: Berger, Jens. CSIRO Plant Industry; Australia
Fil: von Wettberg, Eric J.B. University of Vermont. Gund Institute for the Environment. Department of Plant and Soil Sciences; Estados Unidos
Fil: Smýkal, Petr. Palacký University. Faculty of Sciences. Department of Botany; República Checa
description Crops arose from wild ancestors and to understand their domestication it is essential to compare the cultivated species with their crop wild relatives. These represent an important source of further crop improvement, in particular in relation to climate change. Although there are about 58,000 Lens accessions held in genebanks, only 1% are wild. We examined the geographic distribution and genetic diversity of the lentil's immediate progenitor L. orientalis. We used Genotyping by Sequencing (GBS) to identify and characterize differentiation among accessions held at germplasm collections. We then determined whether genetically distinct clusters of accessions had been collected from climatically distinct locations. Of the 195 genotyped accessions, 124 were genuine L. orientalis with four identified genetic groups. Although an environmental distance matrix was significantly correlated with geographic distance in a Mantel test, the four identified genetic clusters were not found to occupy significantly different environmental space. Maxent modelling gave a distinct predicted distribution pattern centred in the Fertile Crescent, with intermediate probabilities of occurrence in parts of Turkey, Greece, Cyprus, Morocco, and the south of the Iberian Peninsula with NW Africa. Future projections did not show any dramatic alterations in the distribution according to the climate change scenarios tested. We have found considerable diversity in L. orientalis, some of which track climatic variability. The results of the study showed the genetic diversity of wild lentil and indicate the importance of ongoing collections and in situ conservation for our future capacity to harness the genetic variation of the lentil progenitor.
publishDate 2024
dc.date.none.fl_str_mv 2024-03
2025-06-17T11:08:08Z
2025-06-17T11:08:08Z
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/22697
https://onlinelibrary.wiley.com/doi/full/10.1111/plb.13615
1435-8603
1438-8677
https://doi.org/10.1111/plb.13615
url http://hdl.handle.net/20.500.12123/22697
https://onlinelibrary.wiley.com/doi/full/10.1111/plb.13615
https://doi.org/10.1111/plb.13615
identifier_str_mv 1435-8603
1438-8677
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Wiley
publisher.none.fl_str_mv Wiley
dc.source.none.fl_str_mv Plant Biology 26 (2) : 232-244. (March 2024)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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