Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans

Autores
Sautua, Francisco José; Gonzalez, Sergio Alberto; Doyle, Vinson P.; Berretta, Marcelo Facundo; Gordó, Manuela; Scandiani, María Mercedes; Rivarola, Maximo Lisandro; Fernandez, Paula Del Carmen; Carmona, Marcelo Anibal
Año de publicación
2019
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from soybean purple seed collected from San Pedro, Buenos Aires, Argentina, during the 2018 harvest. The genome was sequenced using a 2 × 150 bp paired-end method by Illumina NovaSeq 6000. The C. kikuchii protein-coding genes were predicted using FunGAP (Fungal Genome Annotation Pipeline). The draft genome assembly was 33.1 Mb in size with a GC-content of 53%. The gene prediction resulted in 14,856 gene models/14,721 protein coding genes. Genomic data of C. kikuchii presented here will be a useful resource for future studies of this pathosystem. The data can be accessed at GenBank under the accession number VTAY00000000 https://www.ncbi.nlm.nih.gov/nuccore/VTAY00000000.
Instituto de Biotecnología
Fil: Sautua, Francisco José. Universidad de Buenos Aires. Facultad de Agronomía. Cátedra de Fitopatología; Argentina
Fil: Gonzalez, Sergio Alberto. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Doyle, Vinson P. LSU AgCenter. Department of Plant Pathology and Crop Physiology; Estados Unidos
Fil: Berretta, Marcelo Facundo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Microbiología y Zoología Agrícola; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Gordó, Manuela. Laboratorio Agrícola Río Parana; Argentina
Fil: Scandiani, Mercedes M. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmac euticas. Centro de Referencia de Micología (CEREMIC); Argentina
Fil: Rivarola, Maximo Lisandro. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Fernandez, Paula Del Carmen. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Carmona, Marcelo Anibal. Universidad de Buenos Aires. Facultad de Agronomía. Cátedra de Fitopatología; Argentina
Fuente
Data in brief 27: 104693 (Octubre 2019)
Materia
Cercospora kikuchii
Genomas
Secuencia Nucleotídica
Soja
Bioinformática
Genomes
Nucleotide Sequence
Soybeans
Bioinformatics
Phylogenetic Analyses
Purple Seed Stain
Análisis Filogenético
Mancha Púrpura de la Semilla
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/6638
Acceder
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oai_identifier_str oai:localhost:20.500.12123/6638
network_acronym_str INTADig
repository_id_str l
network_name_str INTA Digital (INTA)
spelling Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeansSautua, Francisco JoséGonzalez, Sergio AlbertoDoyle, Vinson P.Berretta, Marcelo FacundoGordó, ManuelaScandiani, María MercedesRivarola, Maximo LisandroFernandez, Paula Del CarmenCarmona, Marcelo AnibalCercospora kikuchiiGenomasSecuencia NucleotídicaSojaBioinformáticaGenomesNucleotide SequenceSoybeansBioinformaticsPhylogenetic AnalysesPurple Seed StainAnálisis FilogenéticoMancha Púrpura de la SemillaCercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from soybean purple seed collected from San Pedro, Buenos Aires, Argentina, during the 2018 harvest. The genome was sequenced using a 2 × 150 bp paired-end method by Illumina NovaSeq 6000. The C. kikuchii protein-coding genes were predicted using FunGAP (Fungal Genome Annotation Pipeline). The draft genome assembly was 33.1 Mb in size with a GC-content of 53%. The gene prediction resulted in 14,856 gene models/14,721 protein coding genes. Genomic data of C. kikuchii presented here will be a useful resource for future studies of this pathosystem. The data can be accessed at GenBank under the accession number VTAY00000000 https://www.ncbi.nlm.nih.gov/nuccore/VTAY00000000.Instituto de BiotecnologíaFil: Sautua, Francisco José. Universidad de Buenos Aires. Facultad de Agronomía. Cátedra de Fitopatología; ArgentinaFil: Gonzalez, Sergio Alberto. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Doyle, Vinson P. LSU AgCenter. Department of Plant Pathology and Crop Physiology; Estados UnidosFil: Berretta, Marcelo Facundo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Microbiología y Zoología Agrícola; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Gordó, Manuela. Laboratorio Agrícola Río Parana; ArgentinaFil: Scandiani, Mercedes M. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmac euticas. Centro de Referencia de Micología (CEREMIC); ArgentinaFil: Rivarola, Maximo Lisandro. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Fernandez, Paula Del Carmen. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Carmona, Marcelo Anibal. Universidad de Buenos Aires. Facultad de Agronomía. Cátedra de Fitopatología; ArgentinaElsevier2020-01-08T17:54:04Z2020-01-08T17:54:04Z2019-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/6638https://www.sciencedirect.com/science/article/pii/S23523409193104802352-3409https://doi.org/10.1016/j.dib.2019.104693Data in brief 27: 104693 (Octubre 2019)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-04T09:48:19Zoai:localhost:20.500.12123/6638instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-04 09:48:19.982INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
title Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
spellingShingle Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
Sautua, Francisco José
Cercospora kikuchii
Genomas
Secuencia Nucleotídica
Soja
Bioinformática
Genomes
Nucleotide Sequence
Soybeans
Bioinformatics
Phylogenetic Analyses
Purple Seed Stain
Análisis Filogenético
Mancha Púrpura de la Semilla
title_short Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
title_full Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
title_fullStr Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
title_full_unstemmed Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
title_sort Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
dc.creator.none.fl_str_mv Sautua, Francisco José
Gonzalez, Sergio Alberto
Doyle, Vinson P.
Berretta, Marcelo Facundo
Gordó, Manuela
Scandiani, María Mercedes
Rivarola, Maximo Lisandro
Fernandez, Paula Del Carmen
Carmona, Marcelo Anibal
author Sautua, Francisco José
author_facet Sautua, Francisco José
Gonzalez, Sergio Alberto
Doyle, Vinson P.
Berretta, Marcelo Facundo
Gordó, Manuela
Scandiani, María Mercedes
Rivarola, Maximo Lisandro
Fernandez, Paula Del Carmen
Carmona, Marcelo Anibal
author_role author
author2 Gonzalez, Sergio Alberto
Doyle, Vinson P.
Berretta, Marcelo Facundo
Gordó, Manuela
Scandiani, María Mercedes
Rivarola, Maximo Lisandro
Fernandez, Paula Del Carmen
Carmona, Marcelo Anibal
author2_role author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Cercospora kikuchii
Genomas
Secuencia Nucleotídica
Soja
Bioinformática
Genomes
Nucleotide Sequence
Soybeans
Bioinformatics
Phylogenetic Analyses
Purple Seed Stain
Análisis Filogenético
Mancha Púrpura de la Semilla
topic Cercospora kikuchii
Genomas
Secuencia Nucleotídica
Soja
Bioinformática
Genomes
Nucleotide Sequence
Soybeans
Bioinformatics
Phylogenetic Analyses
Purple Seed Stain
Análisis Filogenético
Mancha Púrpura de la Semilla
dc.description.none.fl_txt_mv Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from soybean purple seed collected from San Pedro, Buenos Aires, Argentina, during the 2018 harvest. The genome was sequenced using a 2 × 150 bp paired-end method by Illumina NovaSeq 6000. The C. kikuchii protein-coding genes were predicted using FunGAP (Fungal Genome Annotation Pipeline). The draft genome assembly was 33.1 Mb in size with a GC-content of 53%. The gene prediction resulted in 14,856 gene models/14,721 protein coding genes. Genomic data of C. kikuchii presented here will be a useful resource for future studies of this pathosystem. The data can be accessed at GenBank under the accession number VTAY00000000 https://www.ncbi.nlm.nih.gov/nuccore/VTAY00000000.
Instituto de Biotecnología
Fil: Sautua, Francisco José. Universidad de Buenos Aires. Facultad de Agronomía. Cátedra de Fitopatología; Argentina
Fil: Gonzalez, Sergio Alberto. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Doyle, Vinson P. LSU AgCenter. Department of Plant Pathology and Crop Physiology; Estados Unidos
Fil: Berretta, Marcelo Facundo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Microbiología y Zoología Agrícola; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Gordó, Manuela. Laboratorio Agrícola Río Parana; Argentina
Fil: Scandiani, Mercedes M. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmac euticas. Centro de Referencia de Micología (CEREMIC); Argentina
Fil: Rivarola, Maximo Lisandro. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Fernandez, Paula Del Carmen. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Carmona, Marcelo Anibal. Universidad de Buenos Aires. Facultad de Agronomía. Cátedra de Fitopatología; Argentina
description Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from soybean purple seed collected from San Pedro, Buenos Aires, Argentina, during the 2018 harvest. The genome was sequenced using a 2 × 150 bp paired-end method by Illumina NovaSeq 6000. The C. kikuchii protein-coding genes were predicted using FunGAP (Fungal Genome Annotation Pipeline). The draft genome assembly was 33.1 Mb in size with a GC-content of 53%. The gene prediction resulted in 14,856 gene models/14,721 protein coding genes. Genomic data of C. kikuchii presented here will be a useful resource for future studies of this pathosystem. The data can be accessed at GenBank under the accession number VTAY00000000 https://www.ncbi.nlm.nih.gov/nuccore/VTAY00000000.
publishDate 2019
dc.date.none.fl_str_mv 2019-10
2020-01-08T17:54:04Z
2020-01-08T17:54:04Z
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/6638
https://www.sciencedirect.com/science/article/pii/S2352340919310480
2352-3409
https://doi.org/10.1016/j.dib.2019.104693
url http://hdl.handle.net/20.500.12123/6638
https://www.sciencedirect.com/science/article/pii/S2352340919310480
https://doi.org/10.1016/j.dib.2019.104693
identifier_str_mv 2352-3409
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv Data in brief 27: 104693 (Octubre 2019)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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score 12.623145

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