The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species

Autores
Smith, Timothy P. L.; Bickhart, Derek M.; Boichard, Didier; Chamberlain, Amanda J.; Djikeng, Appolinaire; Jiang, Yu; Low, Wai Y.; Pausch, Hubert; Demyda-peyrás, Sebastian; Prendergast, James; Schnabel, Robert D.; Rosen, Benjamin D.
Año de publicación
2023
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The Bovine Pangenome Consortium (BPC) is an international collaboration dedicated to the assembly of cattle genomes to develop a more complete representation of cattle genomic diversity. The goal of the BPC is to provide genome assemblies and a community-agreed pangenome representation to replace breed-specific reference assemblies for cattle genomics. The BPC invites partners sharing our vision to participate in the production of these assemblies and the development of a common, community-approved, pangenome reference as a public resource for the research community (https://bovinepangenome.github.io/). This community-driven resource will provide the context for comparison between studies and the future foundation for cattle genomic selection.
Fil: Smith, Timothy P. L.. No especifíca;
Fil: Bickhart, Derek M.. No especifíca;
Fil: Boichard, Didier. Universite Paris-saclay (universite Paris-saclay);
Fil: Chamberlain, Amanda J.. La Trobe University; Australia
Fil: Djikeng, Appolinaire. No especifíca;
Fil: Jiang, Yu. No especifíca;
Fil: Low, Wai Y.. University of Adelaide; Australia
Fil: Pausch, Hubert. No especifíca;
Fil: Demyda-peyrás, Sebastian. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; Argentina
Fil: Prendergast, James. University of Edinburgh; Reino Unido
Fil: Schnabel, Robert D.. University of Missouri; Estados Unidos
Fil: Rosen, Benjamin D.. United States Department of Agriculture. Agriculture Research Service; Estados Unidos
Materia
Pangenome
Bovine
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/219909
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/219909
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine speciesSmith, Timothy P. L.Bickhart, Derek M.Boichard, DidierChamberlain, Amanda J.Djikeng, AppolinaireJiang, YuLow, Wai Y.Pausch, HubertDemyda-peyrás, SebastianPrendergast, JamesSchnabel, Robert D.Rosen, Benjamin D.PangenomeBovinehttps://purl.org/becyt/ford/4.4https://purl.org/becyt/ford/4The Bovine Pangenome Consortium (BPC) is an international collaboration dedicated to the assembly of cattle genomes to develop a more complete representation of cattle genomic diversity. The goal of the BPC is to provide genome assemblies and a community-agreed pangenome representation to replace breed-specific reference assemblies for cattle genomics. The BPC invites partners sharing our vision to participate in the production of these assemblies and the development of a common, community-approved, pangenome reference as a public resource for the research community (https://bovinepangenome.github.io/). This community-driven resource will provide the context for comparison between studies and the future foundation for cattle genomic selection.Fil: Smith, Timothy P. L.. No especifíca;Fil: Bickhart, Derek M.. No especifíca;Fil: Boichard, Didier. Universite Paris-saclay (universite Paris-saclay);Fil: Chamberlain, Amanda J.. La Trobe University; AustraliaFil: Djikeng, Appolinaire. No especifíca;Fil: Jiang, Yu. No especifíca;Fil: Low, Wai Y.. University of Adelaide; AustraliaFil: Pausch, Hubert. No especifíca;Fil: Demyda-peyrás, Sebastian. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Prendergast, James. University of Edinburgh; Reino UnidoFil: Schnabel, Robert D.. University of Missouri; Estados UnidosFil: Rosen, Benjamin D.. United States Department of Agriculture. Agriculture Research Service; Estados UnidosBioMed Central2023-12info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/219909Smith, Timothy P. L.; Bickhart, Derek M.; Boichard, Didier; Chamberlain, Amanda J.; Djikeng, Appolinaire; et al.; The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species; BioMed Central; Genome Biology; 24; 1; 12-2023; 1-131474-75961474-760XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1186/s13059-023-02975-0info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-11-12T09:48:18Zoai:ri.conicet.gov.ar:11336/219909instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-11-12 09:48:18.422CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
title The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
spellingShingle The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
Smith, Timothy P. L.
Pangenome
Bovine
title_short The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
title_full The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
title_fullStr The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
title_full_unstemmed The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
title_sort The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
dc.creator.none.fl_str_mv Smith, Timothy P. L.
Bickhart, Derek M.
Boichard, Didier
Chamberlain, Amanda J.
Djikeng, Appolinaire
Jiang, Yu
Low, Wai Y.
Pausch, Hubert
Demyda-peyrás, Sebastian
Prendergast, James
Schnabel, Robert D.
Rosen, Benjamin D.
author Smith, Timothy P. L.
author_facet Smith, Timothy P. L.
Bickhart, Derek M.
Boichard, Didier
Chamberlain, Amanda J.
Djikeng, Appolinaire
Jiang, Yu
Low, Wai Y.
Pausch, Hubert
Demyda-peyrás, Sebastian
Prendergast, James
Schnabel, Robert D.
Rosen, Benjamin D.
author_role author
author2 Bickhart, Derek M.
Boichard, Didier
Chamberlain, Amanda J.
Djikeng, Appolinaire
Jiang, Yu
Low, Wai Y.
Pausch, Hubert
Demyda-peyrás, Sebastian
Prendergast, James
Schnabel, Robert D.
Rosen, Benjamin D.
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Pangenome
Bovine
topic Pangenome
Bovine
purl_subject.fl_str_mv https://purl.org/becyt/ford/4.4
https://purl.org/becyt/ford/4
dc.description.none.fl_txt_mv The Bovine Pangenome Consortium (BPC) is an international collaboration dedicated to the assembly of cattle genomes to develop a more complete representation of cattle genomic diversity. The goal of the BPC is to provide genome assemblies and a community-agreed pangenome representation to replace breed-specific reference assemblies for cattle genomics. The BPC invites partners sharing our vision to participate in the production of these assemblies and the development of a common, community-approved, pangenome reference as a public resource for the research community (https://bovinepangenome.github.io/). This community-driven resource will provide the context for comparison between studies and the future foundation for cattle genomic selection.
Fil: Smith, Timothy P. L.. No especifíca;
Fil: Bickhart, Derek M.. No especifíca;
Fil: Boichard, Didier. Universite Paris-saclay (universite Paris-saclay);
Fil: Chamberlain, Amanda J.. La Trobe University; Australia
Fil: Djikeng, Appolinaire. No especifíca;
Fil: Jiang, Yu. No especifíca;
Fil: Low, Wai Y.. University of Adelaide; Australia
Fil: Pausch, Hubert. No especifíca;
Fil: Demyda-peyrás, Sebastian. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; Argentina
Fil: Prendergast, James. University of Edinburgh; Reino Unido
Fil: Schnabel, Robert D.. University of Missouri; Estados Unidos
Fil: Rosen, Benjamin D.. United States Department of Agriculture. Agriculture Research Service; Estados Unidos
description The Bovine Pangenome Consortium (BPC) is an international collaboration dedicated to the assembly of cattle genomes to develop a more complete representation of cattle genomic diversity. The goal of the BPC is to provide genome assemblies and a community-agreed pangenome representation to replace breed-specific reference assemblies for cattle genomics. The BPC invites partners sharing our vision to participate in the production of these assemblies and the development of a common, community-approved, pangenome reference as a public resource for the research community (https://bovinepangenome.github.io/). This community-driven resource will provide the context for comparison between studies and the future foundation for cattle genomic selection.
publishDate 2023
dc.date.none.fl_str_mv 2023-12
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/219909
Smith, Timothy P. L.; Bickhart, Derek M.; Boichard, Didier; Chamberlain, Amanda J.; Djikeng, Appolinaire; et al.; The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species; BioMed Central; Genome Biology; 24; 1; 12-2023; 1-13
1474-7596
1474-760X
CONICET Digital
CONICET
url http://hdl.handle.net/11336/219909
identifier_str_mv Smith, Timothy P. L.; Bickhart, Derek M.; Boichard, Didier; Chamberlain, Amanda J.; Djikeng, Appolinaire; et al.; The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species; BioMed Central; Genome Biology; 24; 1; 12-2023; 1-13
1474-7596
1474-760X
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1186/s13059-023-02975-0
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv BioMed Central
publisher.none.fl_str_mv BioMed Central
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1848598000372285440
score 13.24909

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