Stemformatics: Visualisation and sharing of stem cell gene expression
- Autores
- Wells, Christine A.; Mosbergen, Rowland; Korn, Othmar; Choi, Jarny; Seidenman, Nick; Matigian, Nicholas A.; Vitale, Alejandra Mariel; Shepherd, Jill
- Año de publicación
- 2013
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Genome-scale technologies are increasingly adopted by the stem cell research community, because of the potential to uncover the molecular events most informative about a stem cell state. These technologies also present enormous challenges around the sharing and visualisation of data derived from different laboratories or under different experimental conditions. Stemformatics is an easy to use, publicly accessible portal that hosts a large collection of exemplar stem cell data. It provides fast visualisation of gene expression across a range of mouse and human datasets, with transparent links back to the original studies. One difficulty in the analysis of stem cell signatures is the paucity of public pathways/gene lists relevant to stem cell or developmental biology. Stemformatics provides a simple mechanism to create, share and analyse gene sets, providing a repository of community-annotated stem cell gene lists that are informative about pathways, lineage commitment, and common technical artefacts. Stemformatics can be accessed at stemformatics.org.
Fil: Wells, Christine A.. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; Australia
Fil: Mosbergen, Rowland. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; Australia
Fil: Korn, Othmar. Griffith University; Australia
Fil: Choi, Jarny. The Walter and Eliza Hall Institute of Medical Research; Australia
Fil: Seidenman, Nick. The Walter and Eliza Hall Institute of Medical Research; Canadá
Fil: Matigian, Nicholas A.. Griffith University; Australia
Fil: Vitale, Alejandra Mariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Biología y Medicina Experimental. Fundación de Instituto de Biología y Medicina Experimental. Instituto de Biología y Medicina Experimental; Argentina. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; Australia
Fil: Shepherd, Jill. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; Australia - Materia
-
Bioinformatics
Stem Cells
Gene Expression
Transcriptome - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/25075
Ver los metadatos del registro completo
id |
CONICETDig_f09a25cc3a8fc963ae64cbe20e95c3eb |
---|---|
oai_identifier_str |
oai:ri.conicet.gov.ar:11336/25075 |
network_acronym_str |
CONICETDig |
repository_id_str |
3498 |
network_name_str |
CONICET Digital (CONICET) |
spelling |
Stemformatics: Visualisation and sharing of stem cell gene expressionWells, Christine A.Mosbergen, RowlandKorn, OthmarChoi, JarnySeidenman, NickMatigian, Nicholas A.Vitale, Alejandra MarielShepherd, JillBioinformaticsStem CellsGene ExpressionTranscriptomehttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Genome-scale technologies are increasingly adopted by the stem cell research community, because of the potential to uncover the molecular events most informative about a stem cell state. These technologies also present enormous challenges around the sharing and visualisation of data derived from different laboratories or under different experimental conditions. Stemformatics is an easy to use, publicly accessible portal that hosts a large collection of exemplar stem cell data. It provides fast visualisation of gene expression across a range of mouse and human datasets, with transparent links back to the original studies. One difficulty in the analysis of stem cell signatures is the paucity of public pathways/gene lists relevant to stem cell or developmental biology. Stemformatics provides a simple mechanism to create, share and analyse gene sets, providing a repository of community-annotated stem cell gene lists that are informative about pathways, lineage commitment, and common technical artefacts. Stemformatics can be accessed at stemformatics.org.Fil: Wells, Christine A.. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; AustraliaFil: Mosbergen, Rowland. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; AustraliaFil: Korn, Othmar. Griffith University; AustraliaFil: Choi, Jarny. The Walter and Eliza Hall Institute of Medical Research; AustraliaFil: Seidenman, Nick. The Walter and Eliza Hall Institute of Medical Research; CanadáFil: Matigian, Nicholas A.. Griffith University; AustraliaFil: Vitale, Alejandra Mariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Biología y Medicina Experimental. Fundación de Instituto de Biología y Medicina Experimental. Instituto de Biología y Medicina Experimental; Argentina. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; AustraliaFil: Shepherd, Jill. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; AustraliaElsevier Science2013-05info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/25075Wells, Christine A.; Mosbergen, Rowland; Korn, Othmar; Choi, Jarny; Seidenman, Nick; et al.; Stemformatics: Visualisation and sharing of stem cell gene expression; Elsevier Science; Stem Cell Research; 10; 3; 5-2013; 387-3951873-50611876-7753CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://www.sciencedirect.com/science/article/pii/S1873506112001262info:eu-repo/semantics/altIdentifier/doi/10.1016/j.scr.2012.12.003info:eu-repo/semantics/altIdentifier/url/23466562info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-nd/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T10:21:56Zoai:ri.conicet.gov.ar:11336/25075instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 10:21:56.631CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Stemformatics: Visualisation and sharing of stem cell gene expression |
title |
Stemformatics: Visualisation and sharing of stem cell gene expression |
spellingShingle |
Stemformatics: Visualisation and sharing of stem cell gene expression Wells, Christine A. Bioinformatics Stem Cells Gene Expression Transcriptome |
title_short |
Stemformatics: Visualisation and sharing of stem cell gene expression |
title_full |
Stemformatics: Visualisation and sharing of stem cell gene expression |
title_fullStr |
Stemformatics: Visualisation and sharing of stem cell gene expression |
title_full_unstemmed |
Stemformatics: Visualisation and sharing of stem cell gene expression |
title_sort |
Stemformatics: Visualisation and sharing of stem cell gene expression |
dc.creator.none.fl_str_mv |
Wells, Christine A. Mosbergen, Rowland Korn, Othmar Choi, Jarny Seidenman, Nick Matigian, Nicholas A. Vitale, Alejandra Mariel Shepherd, Jill |
author |
Wells, Christine A. |
author_facet |
Wells, Christine A. Mosbergen, Rowland Korn, Othmar Choi, Jarny Seidenman, Nick Matigian, Nicholas A. Vitale, Alejandra Mariel Shepherd, Jill |
author_role |
author |
author2 |
Mosbergen, Rowland Korn, Othmar Choi, Jarny Seidenman, Nick Matigian, Nicholas A. Vitale, Alejandra Mariel Shepherd, Jill |
author2_role |
author author author author author author author |
dc.subject.none.fl_str_mv |
Bioinformatics Stem Cells Gene Expression Transcriptome |
topic |
Bioinformatics Stem Cells Gene Expression Transcriptome |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Genome-scale technologies are increasingly adopted by the stem cell research community, because of the potential to uncover the molecular events most informative about a stem cell state. These technologies also present enormous challenges around the sharing and visualisation of data derived from different laboratories or under different experimental conditions. Stemformatics is an easy to use, publicly accessible portal that hosts a large collection of exemplar stem cell data. It provides fast visualisation of gene expression across a range of mouse and human datasets, with transparent links back to the original studies. One difficulty in the analysis of stem cell signatures is the paucity of public pathways/gene lists relevant to stem cell or developmental biology. Stemformatics provides a simple mechanism to create, share and analyse gene sets, providing a repository of community-annotated stem cell gene lists that are informative about pathways, lineage commitment, and common technical artefacts. Stemformatics can be accessed at stemformatics.org. Fil: Wells, Christine A.. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; Australia Fil: Mosbergen, Rowland. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; Australia Fil: Korn, Othmar. Griffith University; Australia Fil: Choi, Jarny. The Walter and Eliza Hall Institute of Medical Research; Australia Fil: Seidenman, Nick. The Walter and Eliza Hall Institute of Medical Research; Canadá Fil: Matigian, Nicholas A.. Griffith University; Australia Fil: Vitale, Alejandra Mariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Biología y Medicina Experimental. Fundación de Instituto de Biología y Medicina Experimental. Instituto de Biología y Medicina Experimental; Argentina. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; Australia Fil: Shepherd, Jill. The University Of Queensland. Australian Institute For Bioengineering And Nanotecnology; Australia |
description |
Genome-scale technologies are increasingly adopted by the stem cell research community, because of the potential to uncover the molecular events most informative about a stem cell state. These technologies also present enormous challenges around the sharing and visualisation of data derived from different laboratories or under different experimental conditions. Stemformatics is an easy to use, publicly accessible portal that hosts a large collection of exemplar stem cell data. It provides fast visualisation of gene expression across a range of mouse and human datasets, with transparent links back to the original studies. One difficulty in the analysis of stem cell signatures is the paucity of public pathways/gene lists relevant to stem cell or developmental biology. Stemformatics provides a simple mechanism to create, share and analyse gene sets, providing a repository of community-annotated stem cell gene lists that are informative about pathways, lineage commitment, and common technical artefacts. Stemformatics can be accessed at stemformatics.org. |
publishDate |
2013 |
dc.date.none.fl_str_mv |
2013-05 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/25075 Wells, Christine A.; Mosbergen, Rowland; Korn, Othmar; Choi, Jarny; Seidenman, Nick; et al.; Stemformatics: Visualisation and sharing of stem cell gene expression; Elsevier Science; Stem Cell Research; 10; 3; 5-2013; 387-395 1873-5061 1876-7753 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/25075 |
identifier_str_mv |
Wells, Christine A.; Mosbergen, Rowland; Korn, Othmar; Choi, Jarny; Seidenman, Nick; et al.; Stemformatics: Visualisation and sharing of stem cell gene expression; Elsevier Science; Stem Cell Research; 10; 3; 5-2013; 387-395 1873-5061 1876-7753 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/http://www.sciencedirect.com/science/article/pii/S1873506112001262 info:eu-repo/semantics/altIdentifier/doi/10.1016/j.scr.2012.12.003 info:eu-repo/semantics/altIdentifier/url/23466562 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-nd/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Elsevier Science |
publisher.none.fl_str_mv |
Elsevier Science |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
_version_ |
1844614210019917824 |
score |
13.070432 |