Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma

Autores
Francino, Olga; Pérez, Daniel; Viñes, Joaquim; Fonticoba, Rocío; Madroñero, Sergi; Meroni, Gabrielle; Martino, P.; Martínez, Sofía; Cuscó, Anna; Fàbregas, Norma; Migura García, Lourdes; Ferrer, Lluís
Año de publicación
2021
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
We have de novo assembled and polished 61 Staphylococcus pseudintermedius genome sequences with Nanopore-only long reads. Completeness was 99.25%. The average genome size was 2.70 Mbp, comprising 2,506 coding sequences, 19 complete rRNAs, 56 to 59 tRNAs, and 4 noncoding RNAs (ncRNAs), as well as CRISPR arrays.
Fil: Francino, Olga. Universitat Autònoma de Barcelona; España
Fil: Pérez, Daniel. Universitat Autònoma de Barcelona; España
Fil: Viñes, Joaquim. Universitat Autònoma de Barcelona; España
Fil: Fonticoba, Rocío. Universitat Autònoma de Barcelona; España
Fil: Madroñero, Sergi. Universitat Autònoma de Barcelona; España
Fil: Meroni, Gabrielle. No especifíca;
Fil: Martino, P.. No especifíca;
Fil: Martínez, Sofía. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Centro de Investigación Veterinaria de Tandil. Universidad Nacional del Centro de la Provincia de Buenos Aires. Centro de Investigación Veterinaria de Tandil. Provincia de Buenos Aires. Gobernación. Comision de Investigaciones Científicas. Centro de Investigación Veterinaria de Tandil; Argentina
Fil: Cuscó, Anna. Universitat Autònoma de Barcelona; España
Fil: Fàbregas, Norma. Universitat Autònoma de Barcelona; España
Fil: Migura García, Lourdes. Universitat Autònoma de Barcelona; España
Fil: Ferrer, Lluís. Universitat Autònoma de Barcelona; España
Materia
WHOLE GENOME SEQUENCING
STAPHYLOCOCCUS PSEUDINTERMEDIUS
DOGS
PYODERMA
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/149478
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/149478
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with PyodermaFrancino, OlgaPérez, DanielViñes, JoaquimFonticoba, RocíoMadroñero, SergiMeroni, GabrielleMartino, P.Martínez, SofíaCuscó, AnnaFàbregas, NormaMigura García, LourdesFerrer, LluísWHOLE GENOME SEQUENCINGSTAPHYLOCOCCUS PSEUDINTERMEDIUSDOGSPYODERMAhttps://purl.org/becyt/ford/4.3https://purl.org/becyt/ford/4We have de novo assembled and polished 61 Staphylococcus pseudintermedius genome sequences with Nanopore-only long reads. Completeness was 99.25%. The average genome size was 2.70 Mbp, comprising 2,506 coding sequences, 19 complete rRNAs, 56 to 59 tRNAs, and 4 noncoding RNAs (ncRNAs), as well as CRISPR arrays.Fil: Francino, Olga. Universitat Autònoma de Barcelona; EspañaFil: Pérez, Daniel. Universitat Autònoma de Barcelona; EspañaFil: Viñes, Joaquim. Universitat Autònoma de Barcelona; EspañaFil: Fonticoba, Rocío. Universitat Autònoma de Barcelona; EspañaFil: Madroñero, Sergi. Universitat Autònoma de Barcelona; EspañaFil: Meroni, Gabrielle. No especifíca;Fil: Martino, P.. No especifíca;Fil: Martínez, Sofía. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Centro de Investigación Veterinaria de Tandil. Universidad Nacional del Centro de la Provincia de Buenos Aires. Centro de Investigación Veterinaria de Tandil. Provincia de Buenos Aires. Gobernación. Comision de Investigaciones Científicas. Centro de Investigación Veterinaria de Tandil; ArgentinaFil: Cuscó, Anna. Universitat Autònoma de Barcelona; EspañaFil: Fàbregas, Norma. Universitat Autònoma de Barcelona; EspañaFil: Migura García, Lourdes. Universitat Autònoma de Barcelona; EspañaFil: Ferrer, Lluís. Universitat Autònoma de Barcelona; EspañaAmerican Society for Microbiology2021-04info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/149478Francino, Olga; Pérez, Daniel; Viñes, Joaquim; Fonticoba, Rocío; Madroñero, Sergi; et al.; Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma; American Society for Microbiology; Microbiology Resource Announcements; 10; 16; 4-2021; 1-42576-098XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1128/MRA.00152-21info:eu-repo/semantics/altIdentifier/url/https://journals.asm.org/doi/10.1128/MRA.00152-21info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T15:30:03Zoai:ri.conicet.gov.ar:11336/149478instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 15:30:04.062CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma
title Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma
spellingShingle Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma
Francino, Olga
WHOLE GENOME SEQUENCING
STAPHYLOCOCCUS PSEUDINTERMEDIUS
DOGS
PYODERMA
title_short Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma
title_full Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma
title_fullStr Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma
title_full_unstemmed Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma
title_sort Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma
dc.creator.none.fl_str_mv Francino, Olga
Pérez, Daniel
Viñes, Joaquim
Fonticoba, Rocío
Madroñero, Sergi
Meroni, Gabrielle
Martino, P.
Martínez, Sofía
Cuscó, Anna
Fàbregas, Norma
Migura García, Lourdes
Ferrer, Lluís
author Francino, Olga
author_facet Francino, Olga
Pérez, Daniel
Viñes, Joaquim
Fonticoba, Rocío
Madroñero, Sergi
Meroni, Gabrielle
Martino, P.
Martínez, Sofía
Cuscó, Anna
Fàbregas, Norma
Migura García, Lourdes
Ferrer, Lluís
author_role author
author2 Pérez, Daniel
Viñes, Joaquim
Fonticoba, Rocío
Madroñero, Sergi
Meroni, Gabrielle
Martino, P.
Martínez, Sofía
Cuscó, Anna
Fàbregas, Norma
Migura García, Lourdes
Ferrer, Lluís
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv WHOLE GENOME SEQUENCING
STAPHYLOCOCCUS PSEUDINTERMEDIUS
DOGS
PYODERMA
topic WHOLE GENOME SEQUENCING
STAPHYLOCOCCUS PSEUDINTERMEDIUS
DOGS
PYODERMA
purl_subject.fl_str_mv https://purl.org/becyt/ford/4.3
https://purl.org/becyt/ford/4
dc.description.none.fl_txt_mv We have de novo assembled and polished 61 Staphylococcus pseudintermedius genome sequences with Nanopore-only long reads. Completeness was 99.25%. The average genome size was 2.70 Mbp, comprising 2,506 coding sequences, 19 complete rRNAs, 56 to 59 tRNAs, and 4 noncoding RNAs (ncRNAs), as well as CRISPR arrays.
Fil: Francino, Olga. Universitat Autònoma de Barcelona; España
Fil: Pérez, Daniel. Universitat Autònoma de Barcelona; España
Fil: Viñes, Joaquim. Universitat Autònoma de Barcelona; España
Fil: Fonticoba, Rocío. Universitat Autònoma de Barcelona; España
Fil: Madroñero, Sergi. Universitat Autònoma de Barcelona; España
Fil: Meroni, Gabrielle. No especifíca;
Fil: Martino, P.. No especifíca;
Fil: Martínez, Sofía. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Centro de Investigación Veterinaria de Tandil. Universidad Nacional del Centro de la Provincia de Buenos Aires. Centro de Investigación Veterinaria de Tandil. Provincia de Buenos Aires. Gobernación. Comision de Investigaciones Científicas. Centro de Investigación Veterinaria de Tandil; Argentina
Fil: Cuscó, Anna. Universitat Autònoma de Barcelona; España
Fil: Fàbregas, Norma. Universitat Autònoma de Barcelona; España
Fil: Migura García, Lourdes. Universitat Autònoma de Barcelona; España
Fil: Ferrer, Lluís. Universitat Autònoma de Barcelona; España
description We have de novo assembled and polished 61 Staphylococcus pseudintermedius genome sequences with Nanopore-only long reads. Completeness was 99.25%. The average genome size was 2.70 Mbp, comprising 2,506 coding sequences, 19 complete rRNAs, 56 to 59 tRNAs, and 4 noncoding RNAs (ncRNAs), as well as CRISPR arrays.
publishDate 2021
dc.date.none.fl_str_mv 2021-04
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/149478
Francino, Olga; Pérez, Daniel; Viñes, Joaquim; Fonticoba, Rocío; Madroñero, Sergi; et al.; Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma; American Society for Microbiology; Microbiology Resource Announcements; 10; 16; 4-2021; 1-4
2576-098X
CONICET Digital
CONICET
url http://hdl.handle.net/11336/149478
identifier_str_mv Francino, Olga; Pérez, Daniel; Viñes, Joaquim; Fonticoba, Rocío; Madroñero, Sergi; et al.; Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma; American Society for Microbiology; Microbiology Resource Announcements; 10; 16; 4-2021; 1-4
2576-098X
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1128/MRA.00152-21
info:eu-repo/semantics/altIdentifier/url/https://journals.asm.org/doi/10.1128/MRA.00152-21
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv American Society for Microbiology
publisher.none.fl_str_mv American Society for Microbiology
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1846083439271346176
score 13.22299

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