A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes)

Autores
Fromm, Amir; Atkinson, Stephen D.; Alama Bermejo, Gema; Cartwright, Paulyn; Bartholomew, Jerri; Huchon, Dorothée
Año de publicación
2019
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The complete mitochondrial genome of the banded cusk-eel, Raneya brasilensis (Kaup, 1856), was obtained using next-generation sequencing approaches. The genome sequence was 16,881 bp and exhibited a novel gene order for a vertebrate. Specifically, the WANCY and the nd6–D-loop regions were re-ordered, supporting the hypothesis that these two regions are hotspots for gene rearrangements in Actinopterygii. Phylogenetic reconstructions confirmed that R. brasiliensis is nested within Ophidiiformes. Mitochondrial genomes are required from additional ophidiins to determine whether the gene rearrangements that we observed are specific to the genus Raneya or to the subfamily Ophidiinae.
Fil: Fromm, Amir. Tel Aviv University George S. Wise Faculty Of Life Sciences; Israel
Fil: Atkinson, Stephen D.. State University of Oregon; Estados Unidos
Fil: Alama Bermejo, Gema. Universidad Nacional del Comahue. Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos "Almirante Storni". - Provincia de Río Negro. Ministerio de Agricultura, Ganadería y Pesca. Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos "Almirante Storni". Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet Centro Nacional Patagónico. Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos "Almirante Storni"; Argentina
Fil: Cartwright, Paulyn. University of Kansas; Estados Unidos
Fil: Bartholomew, Jerri. State University of Oregon; Estados Unidos
Fil: Huchon, Dorothée. Tel Aviv University George S. Wise Faculty Of Life Sciences; Israel
Materia
OPHIDIIDAE
MITOGENOMICS
NEXT-GENERATION SEQUENCING
PHYLOGENY
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/118097
Acceder
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network_acronym_str CONICETDig
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network_name_str CONICET Digital (CONICET)
spelling A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes)Fromm, AmirAtkinson, Stephen D.Alama Bermejo, GemaCartwright, PaulynBartholomew, JerriHuchon, DorothéeOPHIDIIDAEMITOGENOMICSNEXT-GENERATION SEQUENCINGPHYLOGENYhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The complete mitochondrial genome of the banded cusk-eel, Raneya brasilensis (Kaup, 1856), was obtained using next-generation sequencing approaches. The genome sequence was 16,881 bp and exhibited a novel gene order for a vertebrate. Specifically, the WANCY and the nd6–D-loop regions were re-ordered, supporting the hypothesis that these two regions are hotspots for gene rearrangements in Actinopterygii. Phylogenetic reconstructions confirmed that R. brasiliensis is nested within Ophidiiformes. Mitochondrial genomes are required from additional ophidiins to determine whether the gene rearrangements that we observed are specific to the genus Raneya or to the subfamily Ophidiinae.Fil: Fromm, Amir. Tel Aviv University George S. Wise Faculty Of Life Sciences; IsraelFil: Atkinson, Stephen D.. State University of Oregon; Estados UnidosFil: Alama Bermejo, Gema. Universidad Nacional del Comahue. Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos "Almirante Storni". - Provincia de Río Negro. Ministerio de Agricultura, Ganadería y Pesca. Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos "Almirante Storni". Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet Centro Nacional Patagónico. Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos "Almirante Storni"; ArgentinaFil: Cartwright, Paulyn. University of Kansas; Estados UnidosFil: Bartholomew, Jerri. State University of Oregon; Estados UnidosFil: Huchon, Dorothée. Tel Aviv University George S. Wise Faculty Of Life Sciences; IsraelTaylor and Francis Ltd.2019-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/118097Fromm, Amir; Atkinson, Stephen D.; Alama Bermejo, Gema; Cartwright, Paulyn; Bartholomew, Jerri; et al.; A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes); Taylor and Francis Ltd.; Mitochondrial DNA Part B: Resources; 4; 1; 1-2019; 1-42380-2359CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1080/23802359.2018.1532824info:eu-repo/semantics/altIdentifier/url/https://www.tandfonline.com/doi/full/10.1080/23802359.2018.1532824info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T10:03:31Zoai:ri.conicet.gov.ar:11336/118097instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 10:03:32.151CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes)
title A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes)
spellingShingle A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes)
Fromm, Amir
OPHIDIIDAE
MITOGENOMICS
NEXT-GENERATION SEQUENCING
PHYLOGENY
title_short A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes)
title_full A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes)
title_fullStr A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes)
title_full_unstemmed A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes)
title_sort A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes)
dc.creator.none.fl_str_mv Fromm, Amir
Atkinson, Stephen D.
Alama Bermejo, Gema
Cartwright, Paulyn
Bartholomew, Jerri
Huchon, Dorothée
author Fromm, Amir
author_facet Fromm, Amir
Atkinson, Stephen D.
Alama Bermejo, Gema
Cartwright, Paulyn
Bartholomew, Jerri
Huchon, Dorothée
author_role author
author2 Atkinson, Stephen D.
Alama Bermejo, Gema
Cartwright, Paulyn
Bartholomew, Jerri
Huchon, Dorothée
author2_role author
author
author
author
author
dc.subject.none.fl_str_mv OPHIDIIDAE
MITOGENOMICS
NEXT-GENERATION SEQUENCING
PHYLOGENY
topic OPHIDIIDAE
MITOGENOMICS
NEXT-GENERATION SEQUENCING
PHYLOGENY
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The complete mitochondrial genome of the banded cusk-eel, Raneya brasilensis (Kaup, 1856), was obtained using next-generation sequencing approaches. The genome sequence was 16,881 bp and exhibited a novel gene order for a vertebrate. Specifically, the WANCY and the nd6–D-loop regions were re-ordered, supporting the hypothesis that these two regions are hotspots for gene rearrangements in Actinopterygii. Phylogenetic reconstructions confirmed that R. brasiliensis is nested within Ophidiiformes. Mitochondrial genomes are required from additional ophidiins to determine whether the gene rearrangements that we observed are specific to the genus Raneya or to the subfamily Ophidiinae.
Fil: Fromm, Amir. Tel Aviv University George S. Wise Faculty Of Life Sciences; Israel
Fil: Atkinson, Stephen D.. State University of Oregon; Estados Unidos
Fil: Alama Bermejo, Gema. Universidad Nacional del Comahue. Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos "Almirante Storni". - Provincia de Río Negro. Ministerio de Agricultura, Ganadería y Pesca. Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos "Almirante Storni". Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet Centro Nacional Patagónico. Centro de Investigación Aplicada y Transferencia Tecnológica en Recursos Marinos "Almirante Storni"; Argentina
Fil: Cartwright, Paulyn. University of Kansas; Estados Unidos
Fil: Bartholomew, Jerri. State University of Oregon; Estados Unidos
Fil: Huchon, Dorothée. Tel Aviv University George S. Wise Faculty Of Life Sciences; Israel
description The complete mitochondrial genome of the banded cusk-eel, Raneya brasilensis (Kaup, 1856), was obtained using next-generation sequencing approaches. The genome sequence was 16,881 bp and exhibited a novel gene order for a vertebrate. Specifically, the WANCY and the nd6–D-loop regions were re-ordered, supporting the hypothesis that these two regions are hotspots for gene rearrangements in Actinopterygii. Phylogenetic reconstructions confirmed that R. brasiliensis is nested within Ophidiiformes. Mitochondrial genomes are required from additional ophidiins to determine whether the gene rearrangements that we observed are specific to the genus Raneya or to the subfamily Ophidiinae.
publishDate 2019
dc.date.none.fl_str_mv 2019-01
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/118097
Fromm, Amir; Atkinson, Stephen D.; Alama Bermejo, Gema; Cartwright, Paulyn; Bartholomew, Jerri; et al.; A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes); Taylor and Francis Ltd.; Mitochondrial DNA Part B: Resources; 4; 1; 1-2019; 1-4
2380-2359
CONICET Digital
CONICET
url http://hdl.handle.net/11336/118097
identifier_str_mv Fromm, Amir; Atkinson, Stephen D.; Alama Bermejo, Gema; Cartwright, Paulyn; Bartholomew, Jerri; et al.; A new mitochondrial gene order in the banded cusk-eel Raneya brasiliensis (Actinopterygii, Ophidiiformes); Taylor and Francis Ltd.; Mitochondrial DNA Part B: Resources; 4; 1; 1-2019; 1-4
2380-2359
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1080/23802359.2018.1532824
info:eu-repo/semantics/altIdentifier/url/https://www.tandfonline.com/doi/full/10.1080/23802359.2018.1532824
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Taylor and Francis Ltd.
publisher.none.fl_str_mv Taylor and Francis Ltd.
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1842269804952551424
score 13.13397

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