A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties

Autores
Addison, Sarah L.; Mendoza, Luciana L.; Rúa, Megan A.; Clinton, Peter W.; Pildain, María Belén; Molina, Lucia; Wakelin, Steve A.
Año de publicación
2025
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Pinus radiata D. Don is one of the most widely planted conifer species globally. While it holds major commercial importance as a softwood plantation tree, its native populations are endangered, making it a species of high conservation value. Here, we present a comprehensive dataset of genetic variation in P. radiata, derived from 821 trees (113 endemic and 708 introduced) sampled across 16 countries. These include both highly domesticated material used in commercial forestry and genetically unaltered individuals from endemic populations. Genotyping was performed using genotype-by-sequencing (GBS), also known as double-digest RAD sequencing (ddRADseq), from P. radiata needle-derived genomic DNA. Alongside the SNP-by-sample dataset, we provide an identity-by-state (IBS) matrix capturing genetic relatedness among individuals. These resources can help trace the genetic origins of current tree breeding selections, identify opportunities to introgress novel genetic material to improve form, growth, and resilience, understand invasiveness of the taxon and guide efforts in conservation and restoration while maintaining the genetic integrity of endemic populations of this globally important species.
Fil: Addison, Sarah L.. Bioeconomy Science Institute; Nueva Zelanda
Fil: Mendoza, Luciana L.. Island Ecology And Conservation Group; México
Fil: Rúa, Megan A.. Wright State University; Estados Unidos
Fil: Clinton, Peter W.. Bioeconomy Science Institute; Nueva Zelanda
Fil: Pildain, María Belén. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Centro de Investigación y Extensión Forestal Andino Patagónico; Argentina
Fil: Molina, Lucia. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Centro de Investigación y Extensión Forestal Andino Patagónico; Argentina
Fil: Wakelin, Steve A.. Bioeconomy Science Institute; Nueva Zelanda
Materia
COSERVATION
FORESTRY
GENETIC GAIN
POPULATION ECOLOGY
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/278623
Acceder
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network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 countiesAddison, Sarah L.Mendoza, Luciana L.Rúa, Megan A.Clinton, Peter W.Pildain, María BelénMolina, LuciaWakelin, Steve A.COSERVATIONFORESTRYGENETIC GAINPOPULATION ECOLOGYhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Pinus radiata D. Don is one of the most widely planted conifer species globally. While it holds major commercial importance as a softwood plantation tree, its native populations are endangered, making it a species of high conservation value. Here, we present a comprehensive dataset of genetic variation in P. radiata, derived from 821 trees (113 endemic and 708 introduced) sampled across 16 countries. These include both highly domesticated material used in commercial forestry and genetically unaltered individuals from endemic populations. Genotyping was performed using genotype-by-sequencing (GBS), also known as double-digest RAD sequencing (ddRADseq), from P. radiata needle-derived genomic DNA. Alongside the SNP-by-sample dataset, we provide an identity-by-state (IBS) matrix capturing genetic relatedness among individuals. These resources can help trace the genetic origins of current tree breeding selections, identify opportunities to introgress novel genetic material to improve form, growth, and resilience, understand invasiveness of the taxon and guide efforts in conservation and restoration while maintaining the genetic integrity of endemic populations of this globally important species.Fil: Addison, Sarah L.. Bioeconomy Science Institute; Nueva ZelandaFil: Mendoza, Luciana L.. Island Ecology And Conservation Group; MéxicoFil: Rúa, Megan A.. Wright State University; Estados UnidosFil: Clinton, Peter W.. Bioeconomy Science Institute; Nueva ZelandaFil: Pildain, María Belén. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Centro de Investigación y Extensión Forestal Andino Patagónico; ArgentinaFil: Molina, Lucia. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Centro de Investigación y Extensión Forestal Andino Patagónico; ArgentinaFil: Wakelin, Steve A.. Bioeconomy Science Institute; Nueva ZelandaElsevier2025-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/278623Addison, Sarah L.; Mendoza, Luciana L.; Rúa, Megan A.; Clinton, Peter W.; Pildain, María Belén; et al.; A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties; Elsevier; Data in Brief; 63; 112123; 10-2025; 1-122352-3409CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://linkinghub.elsevier.com/retrieve/pii/S2352340925008443info:eu-repo/semantics/altIdentifier/doi/10.1016/j.dib.2025.112123info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2026-02-26T10:10:43Zoai:ri.conicet.gov.ar:11336/278623instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982026-02-26 10:10:44.329CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties
title A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties
spellingShingle A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties
Addison, Sarah L.
COSERVATION
FORESTRY
GENETIC GAIN
POPULATION ECOLOGY
title_short A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties
title_full A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties
title_fullStr A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties
title_full_unstemmed A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties
title_sort A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties
dc.creator.none.fl_str_mv Addison, Sarah L.
Mendoza, Luciana L.
Rúa, Megan A.
Clinton, Peter W.
Pildain, María Belén
Molina, Lucia
Wakelin, Steve A.
author Addison, Sarah L.
author_facet Addison, Sarah L.
Mendoza, Luciana L.
Rúa, Megan A.
Clinton, Peter W.
Pildain, María Belén
Molina, Lucia
Wakelin, Steve A.
author_role author
author2 Mendoza, Luciana L.
Rúa, Megan A.
Clinton, Peter W.
Pildain, María Belén
Molina, Lucia
Wakelin, Steve A.
author2_role author
author
author
author
author
author
dc.subject.none.fl_str_mv COSERVATION
FORESTRY
GENETIC GAIN
POPULATION ECOLOGY
topic COSERVATION
FORESTRY
GENETIC GAIN
POPULATION ECOLOGY
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Pinus radiata D. Don is one of the most widely planted conifer species globally. While it holds major commercial importance as a softwood plantation tree, its native populations are endangered, making it a species of high conservation value. Here, we present a comprehensive dataset of genetic variation in P. radiata, derived from 821 trees (113 endemic and 708 introduced) sampled across 16 countries. These include both highly domesticated material used in commercial forestry and genetically unaltered individuals from endemic populations. Genotyping was performed using genotype-by-sequencing (GBS), also known as double-digest RAD sequencing (ddRADseq), from P. radiata needle-derived genomic DNA. Alongside the SNP-by-sample dataset, we provide an identity-by-state (IBS) matrix capturing genetic relatedness among individuals. These resources can help trace the genetic origins of current tree breeding selections, identify opportunities to introgress novel genetic material to improve form, growth, and resilience, understand invasiveness of the taxon and guide efforts in conservation and restoration while maintaining the genetic integrity of endemic populations of this globally important species.
Fil: Addison, Sarah L.. Bioeconomy Science Institute; Nueva Zelanda
Fil: Mendoza, Luciana L.. Island Ecology And Conservation Group; México
Fil: Rúa, Megan A.. Wright State University; Estados Unidos
Fil: Clinton, Peter W.. Bioeconomy Science Institute; Nueva Zelanda
Fil: Pildain, María Belén. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Centro de Investigación y Extensión Forestal Andino Patagónico; Argentina
Fil: Molina, Lucia. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Centro de Investigación y Extensión Forestal Andino Patagónico; Argentina
Fil: Wakelin, Steve A.. Bioeconomy Science Institute; Nueva Zelanda
description Pinus radiata D. Don is one of the most widely planted conifer species globally. While it holds major commercial importance as a softwood plantation tree, its native populations are endangered, making it a species of high conservation value. Here, we present a comprehensive dataset of genetic variation in P. radiata, derived from 821 trees (113 endemic and 708 introduced) sampled across 16 countries. These include both highly domesticated material used in commercial forestry and genetically unaltered individuals from endemic populations. Genotyping was performed using genotype-by-sequencing (GBS), also known as double-digest RAD sequencing (ddRADseq), from P. radiata needle-derived genomic DNA. Alongside the SNP-by-sample dataset, we provide an identity-by-state (IBS) matrix capturing genetic relatedness among individuals. These resources can help trace the genetic origins of current tree breeding selections, identify opportunities to introgress novel genetic material to improve form, growth, and resilience, understand invasiveness of the taxon and guide efforts in conservation and restoration while maintaining the genetic integrity of endemic populations of this globally important species.
publishDate 2025
dc.date.none.fl_str_mv 2025-10
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/278623
Addison, Sarah L.; Mendoza, Luciana L.; Rúa, Megan A.; Clinton, Peter W.; Pildain, María Belén; et al.; A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties; Elsevier; Data in Brief; 63; 112123; 10-2025; 1-12
2352-3409
CONICET Digital
CONICET
url http://hdl.handle.net/11336/278623
identifier_str_mv Addison, Sarah L.; Mendoza, Luciana L.; Rúa, Megan A.; Clinton, Peter W.; Pildain, María Belén; et al.; A genotype-by-sequencing dataset and identity-by-state matrix of genetic variation in 821 Pinus radiata trees from 16 counties; Elsevier; Data in Brief; 63; 112123; 10-2025; 1-12
2352-3409
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://linkinghub.elsevier.com/retrieve/pii/S2352340925008443
info:eu-repo/semantics/altIdentifier/doi/10.1016/j.dib.2025.112123
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.176822

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