Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches

Autores
Salazar Bravo, Jorge; Tinoco, Nicolás; Zeballos, Horacio; Brito, Jorge; Arenas Viveros, Daniela; Marín-C, David; Ramírez Fernández, José Daniel; Reis Percequillo, Alexandre; Lee, Jr., Thomas E.; Solari, Sergio; Colmenares Pinzon, Javier; Nivelo Villavicencio, Carlos Hernán; Rodríguez Herrera, Bernal; Merino, William; Medina Pacheco, César Edgardo; Murillo García, Oscar; Pardiñas, Ulises Francisco J.
Año de publicación
2023
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Ichthyomyini, a morphologically distinctive group of Neotropical cricetid rodents, lacks an integrative study of its systematics and biogeography. Since this tribe is a crucial element of the Sigmodontinae, the most speciose subfamily of the Cricetidae, we conducted a study that includes most of its recognized diversity (five genera and 19 species distributed from southern Mexico to northern Bolivia). For this report we analyzed a combined matrix composed of four molecular markers (RBP3, GHR, RAG1, Cytb) and 56 morphological traits, the latter including 15 external, 14 cranial, 19 dental, five soft-anatomical and three postcranial features. A variety of results were obtained, some of which are inconsistent with the currently accepted classification and understanding of the tribe. Ichthyomyini is retrieved as monophyletic, and it is divided into two main clades that are here recognized as subtribes: one to contain the genus Anotomys and the other composed by the remaining genera. Neusticomys (as currently recognized) was found to consist of two well supported clades, one of which corresponds to the original concept of Daptomys. Accordingly, we propose the resurrection of the latter as a valid genus to include several species from low to middle elevations and restrict Neusticomys to several highland forms. Numerous other revisions are necessary to reconcile the alpha taxonomy of ichthyomyines with our phylogenetic results, including placement of the Cajas Plateau water rat (formerly Chibchanomys orcesi) in the genus Neusticomys (sensu stricto), and the recognition of at least two new species (one in Neusticomys, one in Daptomys). Additional work is necessary to confirm other unanticipated results, such as the non-monophyletic nature of Rheomys and the presence of a possible new genus and species from Peru. Our results also suggest that ichthyomyines are one of the main Andean radiations of sigmodontine cricetids, with an evolutionary history dating to the Late Miocene and subsequent cladogenesis during the Pleistocene.
Fil: Salazar Bravo, Jorge. Texas A&M University; Estados Unidos. Instituto Nacional de Biodiversidad; Ecuador. Universidad Mayor de San Andrés; Bolivia
Fil: Tinoco, Nicolás. Pontificia Universidad Católica del Ecuador; Ecuador
Fil: Zeballos, Horacio. Pontificia Universidad Católica de Perú; Perú
Fil: Brito, Jorge. Instituto Nacional de Biodiversidad; Ecuador
Fil: Arenas Viveros, Daniela. Texas Tech University; Estados Unidos
Fil: Marín-C, David. Universidad de Antioquia; Colombia
Fil: Ramírez Fernández, José Daniel. Costa Rica Wildlife Foundation; Costa Rica
Fil: Reis Percequillo, Alexandre. Universidade de Sao Paulo; Brasil
Fil: Lee, Jr., Thomas E.. Abilene Christian University; Estados Unidos
Fil: Solari, Sergio. Universidad de Antioquia; Colombia
Fil: Colmenares Pinzon, Javier. Texas Tech University; Estados Unidos. Universidad Industrial Santander; Colombia
Fil: Nivelo Villavicencio, Carlos Hernán. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Diversidad y Evolución Austral; Argentina. Instituto Nacional de Biodiversidad; Ecuador
Fil: Rodríguez Herrera, Bernal. Universidad de Costa Rica; Costa Rica
Fil: Merino, William. Universidad de El Salvador; El Salvador
Fil: Medina Pacheco, César Edgardo. Universidad Nacional de San Agustin; Perú
Fil: Murillo García, Oscar. Universidad del Valle; Colombia
Fil: Pardiñas, Ulises Francisco J.. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Diversidad y Evolución Austral; Argentina. Instituto Nacional de Biodiversidad; Ecuador
Materia
AMAZON
ANDEAN
CHIBCHANOMYS ORCESI
DAPTOMYS
ICHTHYOMYINI
NEOTROPICS
SIGMODONTALIA
SUBTRIBES
WATER RATS
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/248949

id CONICETDig_da8904d24c53c68cdf1e4c1386fd892a
oai_identifier_str oai:ri.conicet.gov.ar:11336/248949
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approachesSalazar Bravo, JorgeTinoco, NicolásZeballos, HoracioBrito, JorgeArenas Viveros, DanielaMarín-C, DavidRamírez Fernández, José DanielReis Percequillo, AlexandreLee, Jr., Thomas E.Solari, SergioColmenares Pinzon, JavierNivelo Villavicencio, Carlos HernánRodríguez Herrera, BernalMerino, WilliamMedina Pacheco, César EdgardoMurillo García, OscarPardiñas, Ulises Francisco J.AMAZONANDEANCHIBCHANOMYS ORCESIDAPTOMYSICHTHYOMYININEOTROPICSSIGMODONTALIASUBTRIBESWATER RATShttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Ichthyomyini, a morphologically distinctive group of Neotropical cricetid rodents, lacks an integrative study of its systematics and biogeography. Since this tribe is a crucial element of the Sigmodontinae, the most speciose subfamily of the Cricetidae, we conducted a study that includes most of its recognized diversity (five genera and 19 species distributed from southern Mexico to northern Bolivia). For this report we analyzed a combined matrix composed of four molecular markers (RBP3, GHR, RAG1, Cytb) and 56 morphological traits, the latter including 15 external, 14 cranial, 19 dental, five soft-anatomical and three postcranial features. A variety of results were obtained, some of which are inconsistent with the currently accepted classification and understanding of the tribe. Ichthyomyini is retrieved as monophyletic, and it is divided into two main clades that are here recognized as subtribes: one to contain the genus Anotomys and the other composed by the remaining genera. Neusticomys (as currently recognized) was found to consist of two well supported clades, one of which corresponds to the original concept of Daptomys. Accordingly, we propose the resurrection of the latter as a valid genus to include several species from low to middle elevations and restrict Neusticomys to several highland forms. Numerous other revisions are necessary to reconcile the alpha taxonomy of ichthyomyines with our phylogenetic results, including placement of the Cajas Plateau water rat (formerly Chibchanomys orcesi) in the genus Neusticomys (sensu stricto), and the recognition of at least two new species (one in Neusticomys, one in Daptomys). Additional work is necessary to confirm other unanticipated results, such as the non-monophyletic nature of Rheomys and the presence of a possible new genus and species from Peru. Our results also suggest that ichthyomyines are one of the main Andean radiations of sigmodontine cricetids, with an evolutionary history dating to the Late Miocene and subsequent cladogenesis during the Pleistocene.Fil: Salazar Bravo, Jorge. Texas A&M University; Estados Unidos. Instituto Nacional de Biodiversidad; Ecuador. Universidad Mayor de San Andrés; BoliviaFil: Tinoco, Nicolás. Pontificia Universidad Católica del Ecuador; EcuadorFil: Zeballos, Horacio. Pontificia Universidad Católica de Perú; PerúFil: Brito, Jorge. Instituto Nacional de Biodiversidad; EcuadorFil: Arenas Viveros, Daniela. Texas Tech University; Estados UnidosFil: Marín-C, David. Universidad de Antioquia; ColombiaFil: Ramírez Fernández, José Daniel. Costa Rica Wildlife Foundation; Costa RicaFil: Reis Percequillo, Alexandre. Universidade de Sao Paulo; BrasilFil: Lee, Jr., Thomas E.. Abilene Christian University; Estados UnidosFil: Solari, Sergio. Universidad de Antioquia; ColombiaFil: Colmenares Pinzon, Javier. Texas Tech University; Estados Unidos. Universidad Industrial Santander; ColombiaFil: Nivelo Villavicencio, Carlos Hernán. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Diversidad y Evolución Austral; Argentina. Instituto Nacional de Biodiversidad; EcuadorFil: Rodríguez Herrera, Bernal. Universidad de Costa Rica; Costa RicaFil: Merino, William. Universidad de El Salvador; El SalvadorFil: Medina Pacheco, César Edgardo. Universidad Nacional de San Agustin; PerúFil: Murillo García, Oscar. Universidad del Valle; ColombiaFil: Pardiñas, Ulises Francisco J.. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Diversidad y Evolución Austral; Argentina. Instituto Nacional de Biodiversidad; EcuadorTaylor & Francis2023-01-13info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/248949Salazar Bravo, Jorge; Tinoco, Nicolás; Zeballos, Horacio; Brito, Jorge; Arenas Viveros, Daniela; et al.; Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches; Taylor & Francis; PeerJ; 11; 13-1-2023; 1-712167-8359CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://peerj.com/articles/14319info:eu-repo/semantics/altIdentifier/doi/10.7717/peerj.14319info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T09:50:49Zoai:ri.conicet.gov.ar:11336/248949instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 09:50:50.054CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches
title Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches
spellingShingle Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches
Salazar Bravo, Jorge
AMAZON
ANDEAN
CHIBCHANOMYS ORCESI
DAPTOMYS
ICHTHYOMYINI
NEOTROPICS
SIGMODONTALIA
SUBTRIBES
WATER RATS
title_short Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches
title_full Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches
title_fullStr Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches
title_full_unstemmed Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches
title_sort Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches
dc.creator.none.fl_str_mv Salazar Bravo, Jorge
Tinoco, Nicolás
Zeballos, Horacio
Brito, Jorge
Arenas Viveros, Daniela
Marín-C, David
Ramírez Fernández, José Daniel
Reis Percequillo, Alexandre
Lee, Jr., Thomas E.
Solari, Sergio
Colmenares Pinzon, Javier
Nivelo Villavicencio, Carlos Hernán
Rodríguez Herrera, Bernal
Merino, William
Medina Pacheco, César Edgardo
Murillo García, Oscar
Pardiñas, Ulises Francisco J.
author Salazar Bravo, Jorge
author_facet Salazar Bravo, Jorge
Tinoco, Nicolás
Zeballos, Horacio
Brito, Jorge
Arenas Viveros, Daniela
Marín-C, David
Ramírez Fernández, José Daniel
Reis Percequillo, Alexandre
Lee, Jr., Thomas E.
Solari, Sergio
Colmenares Pinzon, Javier
Nivelo Villavicencio, Carlos Hernán
Rodríguez Herrera, Bernal
Merino, William
Medina Pacheco, César Edgardo
Murillo García, Oscar
Pardiñas, Ulises Francisco J.
author_role author
author2 Tinoco, Nicolás
Zeballos, Horacio
Brito, Jorge
Arenas Viveros, Daniela
Marín-C, David
Ramírez Fernández, José Daniel
Reis Percequillo, Alexandre
Lee, Jr., Thomas E.
Solari, Sergio
Colmenares Pinzon, Javier
Nivelo Villavicencio, Carlos Hernán
Rodríguez Herrera, Bernal
Merino, William
Medina Pacheco, César Edgardo
Murillo García, Oscar
Pardiñas, Ulises Francisco J.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv AMAZON
ANDEAN
CHIBCHANOMYS ORCESI
DAPTOMYS
ICHTHYOMYINI
NEOTROPICS
SIGMODONTALIA
SUBTRIBES
WATER RATS
topic AMAZON
ANDEAN
CHIBCHANOMYS ORCESI
DAPTOMYS
ICHTHYOMYINI
NEOTROPICS
SIGMODONTALIA
SUBTRIBES
WATER RATS
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Ichthyomyini, a morphologically distinctive group of Neotropical cricetid rodents, lacks an integrative study of its systematics and biogeography. Since this tribe is a crucial element of the Sigmodontinae, the most speciose subfamily of the Cricetidae, we conducted a study that includes most of its recognized diversity (five genera and 19 species distributed from southern Mexico to northern Bolivia). For this report we analyzed a combined matrix composed of four molecular markers (RBP3, GHR, RAG1, Cytb) and 56 morphological traits, the latter including 15 external, 14 cranial, 19 dental, five soft-anatomical and three postcranial features. A variety of results were obtained, some of which are inconsistent with the currently accepted classification and understanding of the tribe. Ichthyomyini is retrieved as monophyletic, and it is divided into two main clades that are here recognized as subtribes: one to contain the genus Anotomys and the other composed by the remaining genera. Neusticomys (as currently recognized) was found to consist of two well supported clades, one of which corresponds to the original concept of Daptomys. Accordingly, we propose the resurrection of the latter as a valid genus to include several species from low to middle elevations and restrict Neusticomys to several highland forms. Numerous other revisions are necessary to reconcile the alpha taxonomy of ichthyomyines with our phylogenetic results, including placement of the Cajas Plateau water rat (formerly Chibchanomys orcesi) in the genus Neusticomys (sensu stricto), and the recognition of at least two new species (one in Neusticomys, one in Daptomys). Additional work is necessary to confirm other unanticipated results, such as the non-monophyletic nature of Rheomys and the presence of a possible new genus and species from Peru. Our results also suggest that ichthyomyines are one of the main Andean radiations of sigmodontine cricetids, with an evolutionary history dating to the Late Miocene and subsequent cladogenesis during the Pleistocene.
Fil: Salazar Bravo, Jorge. Texas A&M University; Estados Unidos. Instituto Nacional de Biodiversidad; Ecuador. Universidad Mayor de San Andrés; Bolivia
Fil: Tinoco, Nicolás. Pontificia Universidad Católica del Ecuador; Ecuador
Fil: Zeballos, Horacio. Pontificia Universidad Católica de Perú; Perú
Fil: Brito, Jorge. Instituto Nacional de Biodiversidad; Ecuador
Fil: Arenas Viveros, Daniela. Texas Tech University; Estados Unidos
Fil: Marín-C, David. Universidad de Antioquia; Colombia
Fil: Ramírez Fernández, José Daniel. Costa Rica Wildlife Foundation; Costa Rica
Fil: Reis Percequillo, Alexandre. Universidade de Sao Paulo; Brasil
Fil: Lee, Jr., Thomas E.. Abilene Christian University; Estados Unidos
Fil: Solari, Sergio. Universidad de Antioquia; Colombia
Fil: Colmenares Pinzon, Javier. Texas Tech University; Estados Unidos. Universidad Industrial Santander; Colombia
Fil: Nivelo Villavicencio, Carlos Hernán. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Diversidad y Evolución Austral; Argentina. Instituto Nacional de Biodiversidad; Ecuador
Fil: Rodríguez Herrera, Bernal. Universidad de Costa Rica; Costa Rica
Fil: Merino, William. Universidad de El Salvador; El Salvador
Fil: Medina Pacheco, César Edgardo. Universidad Nacional de San Agustin; Perú
Fil: Murillo García, Oscar. Universidad del Valle; Colombia
Fil: Pardiñas, Ulises Francisco J.. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Diversidad y Evolución Austral; Argentina. Instituto Nacional de Biodiversidad; Ecuador
description Ichthyomyini, a morphologically distinctive group of Neotropical cricetid rodents, lacks an integrative study of its systematics and biogeography. Since this tribe is a crucial element of the Sigmodontinae, the most speciose subfamily of the Cricetidae, we conducted a study that includes most of its recognized diversity (five genera and 19 species distributed from southern Mexico to northern Bolivia). For this report we analyzed a combined matrix composed of four molecular markers (RBP3, GHR, RAG1, Cytb) and 56 morphological traits, the latter including 15 external, 14 cranial, 19 dental, five soft-anatomical and three postcranial features. A variety of results were obtained, some of which are inconsistent with the currently accepted classification and understanding of the tribe. Ichthyomyini is retrieved as monophyletic, and it is divided into two main clades that are here recognized as subtribes: one to contain the genus Anotomys and the other composed by the remaining genera. Neusticomys (as currently recognized) was found to consist of two well supported clades, one of which corresponds to the original concept of Daptomys. Accordingly, we propose the resurrection of the latter as a valid genus to include several species from low to middle elevations and restrict Neusticomys to several highland forms. Numerous other revisions are necessary to reconcile the alpha taxonomy of ichthyomyines with our phylogenetic results, including placement of the Cajas Plateau water rat (formerly Chibchanomys orcesi) in the genus Neusticomys (sensu stricto), and the recognition of at least two new species (one in Neusticomys, one in Daptomys). Additional work is necessary to confirm other unanticipated results, such as the non-monophyletic nature of Rheomys and the presence of a possible new genus and species from Peru. Our results also suggest that ichthyomyines are one of the main Andean radiations of sigmodontine cricetids, with an evolutionary history dating to the Late Miocene and subsequent cladogenesis during the Pleistocene.
publishDate 2023
dc.date.none.fl_str_mv 2023-01-13
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/248949
Salazar Bravo, Jorge; Tinoco, Nicolás; Zeballos, Horacio; Brito, Jorge; Arenas Viveros, Daniela; et al.; Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches; Taylor & Francis; PeerJ; 11; 13-1-2023; 1-71
2167-8359
CONICET Digital
CONICET
url http://hdl.handle.net/11336/248949
identifier_str_mv Salazar Bravo, Jorge; Tinoco, Nicolás; Zeballos, Horacio; Brito, Jorge; Arenas Viveros, Daniela; et al.; Systematics and diversification of the Ichthyomyini (Cricetidae, Sigmodontinae) revisited: Evidence from molecular, morphological, and combined approaches; Taylor & Francis; PeerJ; 11; 13-1-2023; 1-71
2167-8359
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://peerj.com/articles/14319
info:eu-repo/semantics/altIdentifier/doi/10.7717/peerj.14319
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Taylor & Francis
publisher.none.fl_str_mv Taylor & Francis
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1842269056183304192
score 13.13397