Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication

Autores
Van Cauwenberghe, Jannick; Santamaría, Rosa I.; Bustos, Patricia; Juárez, Soledad; Ducci, Maria Antonella; Figueroa Fleming, Trinidad; Etcheverry, Angela Virginia; González, Víctor
Año de publicación
2021
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Bacteriophages play significant roles in the composition, diversity, and evolution of bacterial communities. Despite their importance, it remains unclear how phage diversity and phage-host interactions are spatially structured. Local adaptation may play a key role. Nitrogen-fixing symbiotic bacteria, known as rhizobia, have been shown to locally adapt to domesticated common bean at its Mesoamerican and Andean sites of origin. This may affect phage-rhizobium interactions. However, knowledge about the diversity and coevolution of phages with their respective Rhizobium populations is lacking. Here, through the study of four phage-Rhizobium communities in Mexico and Argentina, we show that both phage and host diversity is spatially structured. Cross-infection experiments demonstrated that phage infection rates were higher overall in sympatric rhizobia than in allopatric rhizobia except for one Argentinean community, indicating phage local adaptation and host maladaptation. Phage-host interactions were shaped by the genetic identity and geographic origin of both the phage and the host. The phages ranged from specialists to generalists, revealing a nested network of interactions. Our results suggest a key role of local adaptation to resident host bacterial communities in shaping the phage genetic and phenotypic composition, following a similar spatial pattern of diversity and coevolution to that in the host.
Fil: Van Cauwenberghe, Jannick. University of California at Berkeley; Estados Unidos. Universidad Nacional Autónoma de México; México
Fil: Santamaría, Rosa I.. Universidad Nacional Autónoma de México; México
Fil: Bustos, Patricia. Universidad Nacional Autónoma de México; México
Fil: Juárez, Soledad. Universidad Nacional Autónoma de México; México
Fil: Ducci, Maria Antonella. Universidad Nacional de Salta; Argentina. Instituto Nacional de Tecnología Agropecuaria; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta; Argentina
Fil: Figueroa Fleming, Trinidad. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta; Argentina. Universidad Nacional de Salta; Argentina
Fil: Etcheverry, Angela Virginia. Universidad Nacional de Salta; Argentina
Fil: González, Víctor. Universidad Nacional Autónoma de México; México
Materia
Rizhobium
Common bean
Bacteria
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/220587
Acceder
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network_acronym_str CONICETDig
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network_name_str CONICET Digital (CONICET)
spelling Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domesticationVan Cauwenberghe, JannickSantamaría, Rosa I.Bustos, PatriciaJuárez, SoledadDucci, Maria AntonellaFigueroa Fleming, TrinidadEtcheverry, Angela VirginiaGonzález, VíctorRizhobiumCommon beanBacteriahttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Bacteriophages play significant roles in the composition, diversity, and evolution of bacterial communities. Despite their importance, it remains unclear how phage diversity and phage-host interactions are spatially structured. Local adaptation may play a key role. Nitrogen-fixing symbiotic bacteria, known as rhizobia, have been shown to locally adapt to domesticated common bean at its Mesoamerican and Andean sites of origin. This may affect phage-rhizobium interactions. However, knowledge about the diversity and coevolution of phages with their respective Rhizobium populations is lacking. Here, through the study of four phage-Rhizobium communities in Mexico and Argentina, we show that both phage and host diversity is spatially structured. Cross-infection experiments demonstrated that phage infection rates were higher overall in sympatric rhizobia than in allopatric rhizobia except for one Argentinean community, indicating phage local adaptation and host maladaptation. Phage-host interactions were shaped by the genetic identity and geographic origin of both the phage and the host. The phages ranged from specialists to generalists, revealing a nested network of interactions. Our results suggest a key role of local adaptation to resident host bacterial communities in shaping the phage genetic and phenotypic composition, following a similar spatial pattern of diversity and coevolution to that in the host.Fil: Van Cauwenberghe, Jannick. University of California at Berkeley; Estados Unidos. Universidad Nacional Autónoma de México; MéxicoFil: Santamaría, Rosa I.. Universidad Nacional Autónoma de México; MéxicoFil: Bustos, Patricia. Universidad Nacional Autónoma de México; MéxicoFil: Juárez, Soledad. Universidad Nacional Autónoma de México; MéxicoFil: Ducci, Maria Antonella. Universidad Nacional de Salta; Argentina. Instituto Nacional de Tecnología Agropecuaria; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta; ArgentinaFil: Figueroa Fleming, Trinidad. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta; Argentina. Universidad Nacional de Salta; ArgentinaFil: Etcheverry, Angela Virginia. Universidad Nacional de Salta; ArgentinaFil: González, Víctor. Universidad Nacional Autónoma de México; MéxicoNature Publishing Group2021-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/220587Van Cauwenberghe, Jannick; Santamaría, Rosa I.; Bustos, Patricia; Juárez, Soledad; Ducci, Maria Antonella; et al.; Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication; Nature Publishing Group; Isme Journal; 15; 7; 7-2021; 2092-21061751-7362CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1038/s41396-021-00907-zinfo:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41396-021-00907-zinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-10T12:59:50Zoai:ri.conicet.gov.ar:11336/220587instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-10 12:59:50.467CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication
title Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication
spellingShingle Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication
Van Cauwenberghe, Jannick
Rizhobium
Common bean
Bacteria
title_short Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication
title_full Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication
title_fullStr Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication
title_full_unstemmed Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication
title_sort Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication
dc.creator.none.fl_str_mv Van Cauwenberghe, Jannick
Santamaría, Rosa I.
Bustos, Patricia
Juárez, Soledad
Ducci, Maria Antonella
Figueroa Fleming, Trinidad
Etcheverry, Angela Virginia
González, Víctor
author Van Cauwenberghe, Jannick
author_facet Van Cauwenberghe, Jannick
Santamaría, Rosa I.
Bustos, Patricia
Juárez, Soledad
Ducci, Maria Antonella
Figueroa Fleming, Trinidad
Etcheverry, Angela Virginia
González, Víctor
author_role author
author2 Santamaría, Rosa I.
Bustos, Patricia
Juárez, Soledad
Ducci, Maria Antonella
Figueroa Fleming, Trinidad
Etcheverry, Angela Virginia
González, Víctor
author2_role author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Rizhobium
Common bean
Bacteria
topic Rizhobium
Common bean
Bacteria
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Bacteriophages play significant roles in the composition, diversity, and evolution of bacterial communities. Despite their importance, it remains unclear how phage diversity and phage-host interactions are spatially structured. Local adaptation may play a key role. Nitrogen-fixing symbiotic bacteria, known as rhizobia, have been shown to locally adapt to domesticated common bean at its Mesoamerican and Andean sites of origin. This may affect phage-rhizobium interactions. However, knowledge about the diversity and coevolution of phages with their respective Rhizobium populations is lacking. Here, through the study of four phage-Rhizobium communities in Mexico and Argentina, we show that both phage and host diversity is spatially structured. Cross-infection experiments demonstrated that phage infection rates were higher overall in sympatric rhizobia than in allopatric rhizobia except for one Argentinean community, indicating phage local adaptation and host maladaptation. Phage-host interactions were shaped by the genetic identity and geographic origin of both the phage and the host. The phages ranged from specialists to generalists, revealing a nested network of interactions. Our results suggest a key role of local adaptation to resident host bacterial communities in shaping the phage genetic and phenotypic composition, following a similar spatial pattern of diversity and coevolution to that in the host.
Fil: Van Cauwenberghe, Jannick. University of California at Berkeley; Estados Unidos. Universidad Nacional Autónoma de México; México
Fil: Santamaría, Rosa I.. Universidad Nacional Autónoma de México; México
Fil: Bustos, Patricia. Universidad Nacional Autónoma de México; México
Fil: Juárez, Soledad. Universidad Nacional Autónoma de México; México
Fil: Ducci, Maria Antonella. Universidad Nacional de Salta; Argentina. Instituto Nacional de Tecnología Agropecuaria; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta; Argentina
Fil: Figueroa Fleming, Trinidad. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Salta; Argentina. Universidad Nacional de Salta; Argentina
Fil: Etcheverry, Angela Virginia. Universidad Nacional de Salta; Argentina
Fil: González, Víctor. Universidad Nacional Autónoma de México; México
description Bacteriophages play significant roles in the composition, diversity, and evolution of bacterial communities. Despite their importance, it remains unclear how phage diversity and phage-host interactions are spatially structured. Local adaptation may play a key role. Nitrogen-fixing symbiotic bacteria, known as rhizobia, have been shown to locally adapt to domesticated common bean at its Mesoamerican and Andean sites of origin. This may affect phage-rhizobium interactions. However, knowledge about the diversity and coevolution of phages with their respective Rhizobium populations is lacking. Here, through the study of four phage-Rhizobium communities in Mexico and Argentina, we show that both phage and host diversity is spatially structured. Cross-infection experiments demonstrated that phage infection rates were higher overall in sympatric rhizobia than in allopatric rhizobia except for one Argentinean community, indicating phage local adaptation and host maladaptation. Phage-host interactions were shaped by the genetic identity and geographic origin of both the phage and the host. The phages ranged from specialists to generalists, revealing a nested network of interactions. Our results suggest a key role of local adaptation to resident host bacterial communities in shaping the phage genetic and phenotypic composition, following a similar spatial pattern of diversity and coevolution to that in the host.
publishDate 2021
dc.date.none.fl_str_mv 2021-07
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/220587
Van Cauwenberghe, Jannick; Santamaría, Rosa I.; Bustos, Patricia; Juárez, Soledad; Ducci, Maria Antonella; et al.; Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication; Nature Publishing Group; Isme Journal; 15; 7; 7-2021; 2092-2106
1751-7362
CONICET Digital
CONICET
url http://hdl.handle.net/11336/220587
identifier_str_mv Van Cauwenberghe, Jannick; Santamaría, Rosa I.; Bustos, Patricia; Juárez, Soledad; Ducci, Maria Antonella; et al.; Spatial patterns in phage-Rhizobium coevolutionary interactions across regions of common bean domestication; Nature Publishing Group; Isme Journal; 15; 7; 7-2021; 2092-2106
1751-7362
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1038/s41396-021-00907-z
info:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41396-021-00907-z
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 12.48226

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