Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele

Autores
Takeshima, S. N.; Miyasaka, T.; Matsumoto, Y.; Xue, G.; de la Barra Diaz, V.; Rogberg Muñoz, Andres; Giovambattista, Guillermo; Ortiz, M.; Oltra, J.; Kanemaki, M.; Onuma, M.; Aida, Y.
Año de publicación
2015
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Bovine leukocyte antigens (BoLAs) are used extensively as markers for bovine disease and immunological traits. In this study, we estimated BoLA-DRB3 allele frequencies using 888 cattle from 10 groups, including seven cattle breeds and three crossbreeds: 99 Red Angus, 100 Black Angus, 81 Chilean Wagyu, 49 Hereford, 95 Hereford × Angus, 71 Hereford × Jersey, 20 Hereford × Overo Colorado, 113 Holstein, 136 Overo Colorado, and 124 Overo Negro cattle. Forty-six BoLA-DRB3 alleles were identified, and each group had between 12 and 29 different BoLA-DRB3 alleles. Overo Negro had the highest number of alleles (29); this breed is considered in Chile to be an ‘Old type’ European Holstein Friesian descendant. By contrast, we detected 21 alleles in Holstein cattle, which are considered to be a ‘Present type’ Holstein Friesian cattle. Chilean cattle groups and four Japanese breeds were compared by neighbor-joining trees and a principal component analysis (PCA). The phylogenetic tree showed that Red Angus and Black Angus cattle were in the same clade, crossbreeds were closely related to their parent breeds, and Holstein cattle from Chile were closely related to Holstein cattle in Japan. Overall, the tree provided a thorough description of breed history. It also showed that the Overo Negro breed was closely related to the Holstein breed, consistent with historical data indicating that Overo Negro is an ‘Old type’ Holstein Friesian cattle. This allelic information will be important for investigating the relationship between major histocompatibility complex (MHC) and disease.
Fil: Takeshima, S. N.. Riken; Japón
Fil: Miyasaka, T.. Riken; Japón
Fil: Matsumoto, Y.. Riken; Japón
Fil: Xue, G.. Riken; Japón
Fil: de la Barra Diaz, V.. Lavet; Chile
Fil: Rogberg Muñoz, Andres. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; Argentina
Fil: Giovambattista, Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Santa Fe. Instituto de Ciencias Veterinarias del Litoral; Argentina
Fil: Ortiz, M.. Universidad Austral de Chile; Chile
Fil: Oltra, J.. Universidad Austral de Chile; Chile
Fil: Kanemaki, M.. Institute for Animal Science; Japón
Fil: Onuma, M.. Riken; Japón
Fil: Aida, Y.. Riken; Japón
Materia
Bola-Drb3 Allele
Allele Frequency
Polymerase Chain Reaction
Sequence-Based Typing
Chilean Cattle Breeds
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/11805
Acceder
id CONICETDig_a8c135c7fd2b42afb9d474672a02fc8a
oai_identifier_str oai:ri.conicet.gov.ar:11336/11805
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 alleleTakeshima, S. N.Miyasaka, T.Matsumoto, Y.Xue, G.de la Barra Diaz, V.Rogberg Muñoz, AndresGiovambattista, GuillermoOrtiz, M.Oltra, J.Kanemaki, M.Onuma, M.Aida, Y.Bola-Drb3 AlleleAllele FrequencyPolymerase Chain ReactionSequence-Based TypingChilean Cattle Breedshttps://purl.org/becyt/ford/4.4https://purl.org/becyt/ford/4Bovine leukocyte antigens (BoLAs) are used extensively as markers for bovine disease and immunological traits. In this study, we estimated BoLA-DRB3 allele frequencies using 888 cattle from 10 groups, including seven cattle breeds and three crossbreeds: 99 Red Angus, 100 Black Angus, 81 Chilean Wagyu, 49 Hereford, 95 Hereford × Angus, 71 Hereford × Jersey, 20 Hereford × Overo Colorado, 113 Holstein, 136 Overo Colorado, and 124 Overo Negro cattle. Forty-six BoLA-DRB3 alleles were identified, and each group had between 12 and 29 different BoLA-DRB3 alleles. Overo Negro had the highest number of alleles (29); this breed is considered in Chile to be an ‘Old type’ European Holstein Friesian descendant. By contrast, we detected 21 alleles in Holstein cattle, which are considered to be a ‘Present type’ Holstein Friesian cattle. Chilean cattle groups and four Japanese breeds were compared by neighbor-joining trees and a principal component analysis (PCA). The phylogenetic tree showed that Red Angus and Black Angus cattle were in the same clade, crossbreeds were closely related to their parent breeds, and Holstein cattle from Chile were closely related to Holstein cattle in Japan. Overall, the tree provided a thorough description of breed history. It also showed that the Overo Negro breed was closely related to the Holstein breed, consistent with historical data indicating that Overo Negro is an ‘Old type’ Holstein Friesian cattle. This allelic information will be important for investigating the relationship between major histocompatibility complex (MHC) and disease.Fil: Takeshima, S. N.. Riken; JapónFil: Miyasaka, T.. Riken; JapónFil: Matsumoto, Y.. Riken; JapónFil: Xue, G.. Riken; JapónFil: de la Barra Diaz, V.. Lavet; ChileFil: Rogberg Muñoz, Andres. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Giovambattista, Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Santa Fe. Instituto de Ciencias Veterinarias del Litoral; ArgentinaFil: Ortiz, M.. Universidad Austral de Chile; ChileFil: Oltra, J.. Universidad Austral de Chile; ChileFil: Kanemaki, M.. Institute for Animal Science; JapónFil: Onuma, M.. Riken; JapónFil: Aida, Y.. Riken; JapónWiley2015-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/11805Takeshima, S. N.; Miyasaka, T.; Matsumoto, Y.; Xue, G.; de la Barra Diaz, V.; et al.; Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele; Wiley; Tissue Antigens; 85; 1; 1-2015; 35-440001-28152059-2310enginfo:eu-repo/semantics/altIdentifier/doi/10.1111/tan.12481info:eu-repo/semantics/altIdentifier/url/http://onlinelibrary.wiley.com/doi/10.1111/tan.12481/abstractinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-10T13:03:36Zoai:ri.conicet.gov.ar:11336/11805instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-10 13:03:37.082CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele
title Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele
spellingShingle Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele
Takeshima, S. N.
Bola-Drb3 Allele
Allele Frequency
Polymerase Chain Reaction
Sequence-Based Typing
Chilean Cattle Breeds
title_short Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele
title_full Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele
title_fullStr Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele
title_full_unstemmed Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele
title_sort Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele
dc.creator.none.fl_str_mv Takeshima, S. N.
Miyasaka, T.
Matsumoto, Y.
Xue, G.
de la Barra Diaz, V.
Rogberg Muñoz, Andres
Giovambattista, Guillermo
Ortiz, M.
Oltra, J.
Kanemaki, M.
Onuma, M.
Aida, Y.
author Takeshima, S. N.
author_facet Takeshima, S. N.
Miyasaka, T.
Matsumoto, Y.
Xue, G.
de la Barra Diaz, V.
Rogberg Muñoz, Andres
Giovambattista, Guillermo
Ortiz, M.
Oltra, J.
Kanemaki, M.
Onuma, M.
Aida, Y.
author_role author
author2 Miyasaka, T.
Matsumoto, Y.
Xue, G.
de la Barra Diaz, V.
Rogberg Muñoz, Andres
Giovambattista, Guillermo
Ortiz, M.
Oltra, J.
Kanemaki, M.
Onuma, M.
Aida, Y.
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Bola-Drb3 Allele
Allele Frequency
Polymerase Chain Reaction
Sequence-Based Typing
Chilean Cattle Breeds
topic Bola-Drb3 Allele
Allele Frequency
Polymerase Chain Reaction
Sequence-Based Typing
Chilean Cattle Breeds
purl_subject.fl_str_mv https://purl.org/becyt/ford/4.4
https://purl.org/becyt/ford/4
dc.description.none.fl_txt_mv Bovine leukocyte antigens (BoLAs) are used extensively as markers for bovine disease and immunological traits. In this study, we estimated BoLA-DRB3 allele frequencies using 888 cattle from 10 groups, including seven cattle breeds and three crossbreeds: 99 Red Angus, 100 Black Angus, 81 Chilean Wagyu, 49 Hereford, 95 Hereford × Angus, 71 Hereford × Jersey, 20 Hereford × Overo Colorado, 113 Holstein, 136 Overo Colorado, and 124 Overo Negro cattle. Forty-six BoLA-DRB3 alleles were identified, and each group had between 12 and 29 different BoLA-DRB3 alleles. Overo Negro had the highest number of alleles (29); this breed is considered in Chile to be an ‘Old type’ European Holstein Friesian descendant. By contrast, we detected 21 alleles in Holstein cattle, which are considered to be a ‘Present type’ Holstein Friesian cattle. Chilean cattle groups and four Japanese breeds were compared by neighbor-joining trees and a principal component analysis (PCA). The phylogenetic tree showed that Red Angus and Black Angus cattle were in the same clade, crossbreeds were closely related to their parent breeds, and Holstein cattle from Chile were closely related to Holstein cattle in Japan. Overall, the tree provided a thorough description of breed history. It also showed that the Overo Negro breed was closely related to the Holstein breed, consistent with historical data indicating that Overo Negro is an ‘Old type’ Holstein Friesian cattle. This allelic information will be important for investigating the relationship between major histocompatibility complex (MHC) and disease.
Fil: Takeshima, S. N.. Riken; Japón
Fil: Miyasaka, T.. Riken; Japón
Fil: Matsumoto, Y.. Riken; Japón
Fil: Xue, G.. Riken; Japón
Fil: de la Barra Diaz, V.. Lavet; Chile
Fil: Rogberg Muñoz, Andres. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; Argentina
Fil: Giovambattista, Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Santa Fe. Instituto de Ciencias Veterinarias del Litoral; Argentina
Fil: Ortiz, M.. Universidad Austral de Chile; Chile
Fil: Oltra, J.. Universidad Austral de Chile; Chile
Fil: Kanemaki, M.. Institute for Animal Science; Japón
Fil: Onuma, M.. Riken; Japón
Fil: Aida, Y.. Riken; Japón
description Bovine leukocyte antigens (BoLAs) are used extensively as markers for bovine disease and immunological traits. In this study, we estimated BoLA-DRB3 allele frequencies using 888 cattle from 10 groups, including seven cattle breeds and three crossbreeds: 99 Red Angus, 100 Black Angus, 81 Chilean Wagyu, 49 Hereford, 95 Hereford × Angus, 71 Hereford × Jersey, 20 Hereford × Overo Colorado, 113 Holstein, 136 Overo Colorado, and 124 Overo Negro cattle. Forty-six BoLA-DRB3 alleles were identified, and each group had between 12 and 29 different BoLA-DRB3 alleles. Overo Negro had the highest number of alleles (29); this breed is considered in Chile to be an ‘Old type’ European Holstein Friesian descendant. By contrast, we detected 21 alleles in Holstein cattle, which are considered to be a ‘Present type’ Holstein Friesian cattle. Chilean cattle groups and four Japanese breeds were compared by neighbor-joining trees and a principal component analysis (PCA). The phylogenetic tree showed that Red Angus and Black Angus cattle were in the same clade, crossbreeds were closely related to their parent breeds, and Holstein cattle from Chile were closely related to Holstein cattle in Japan. Overall, the tree provided a thorough description of breed history. It also showed that the Overo Negro breed was closely related to the Holstein breed, consistent with historical data indicating that Overo Negro is an ‘Old type’ Holstein Friesian cattle. This allelic information will be important for investigating the relationship between major histocompatibility complex (MHC) and disease.
publishDate 2015
dc.date.none.fl_str_mv 2015-01
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/11805
Takeshima, S. N.; Miyasaka, T.; Matsumoto, Y.; Xue, G.; de la Barra Diaz, V.; et al.; Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele; Wiley; Tissue Antigens; 85; 1; 1-2015; 35-44
0001-2815
2059-2310
url http://hdl.handle.net/11336/11805
identifier_str_mv Takeshima, S. N.; Miyasaka, T.; Matsumoto, Y.; Xue, G.; de la Barra Diaz, V.; et al.; Assessment of biodiversity in Chilean cattle using the distribution of major histocompatibility complex class II BoLA-DRB3 allele; Wiley; Tissue Antigens; 85; 1; 1-2015; 35-44
0001-2815
2059-2310
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1111/tan.12481
info:eu-repo/semantics/altIdentifier/url/http://onlinelibrary.wiley.com/doi/10.1111/tan.12481/abstract
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Wiley
publisher.none.fl_str_mv Wiley
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 12.993085

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