Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins

Autores
Rodriguez, Javier; Martí, Jordi; Guardia, Elvira; Laria, Daniel Hector
Año de publicación
2008
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
We report molecular dynamics simulation results of equilibrium and dynamical characteristics pertaining to the solvation of the dye coumarine 153 (C153) trapped within hydrophobic cavities of di- and trimethylated -cyclodextrins (CD) in aqueous solutions. We found that stable configurations of the encapsulated probe are characterized by a slanted docking, in which the plane of the C153 lies mostly parallel to one of the glucose units of the CD.  In and out  dynamical modes of the encapsulated probe present very small amplitudes. The rotational dynamics of the trapped coumarine can be casted in terms of a simple model that includes diffusive motions within a local restrictive environment coupled to the overall rotational motion of the CD. We have examined the early stages of the solvation response of the environment following a vertical excitation of the probe. Regardless of the degree of the CD methylation, the water dynamical response seems to be completed within 2-3 ps, and does not differ substantially from the one observed for non-encapsulated probes. The CD response is characterized by a single, sub-picosecond relaxation that involves intramolecular motions. We also explored dynamical modes that could account for the recently reported persistence of Stokes shifts in the nanosecond time domain. In all cases, the only sources of ultraslow dynamics that we detected were those associated to gauche-trans interconversions in primary hydroxyl chains of the CD, which do not seem to be directly connected to the electronic excitation of the probe.
Fil: Rodriguez, Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química, Física de los Materiales, Medioambiente y Energía. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química, Física de los Materiales, Medioambiente y Energía; Argentina. Comisión Nacional de Energía Atómica. Gerencia Química. CAC; Argentina
Fil: Martí, Jordi. Universidad Politécnica de Catalunya; España
Fil: Guardia, Elvira. Universidad Politécnica de Catalunya; España
Fil: Laria, Daniel Hector. Comisión Nacional de Energía Atómica. Gerencia Química. CAC; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química, Física de los Materiales, Medioambiente y Energía. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química, Física de los Materiales, Medioambiente y Energía; Argentina
Materia
dinamica de solvatacion
cumarinas
ciclodextrinas
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/103601

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spelling Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-CyclodextrinsRodriguez, JavierMartí, JordiGuardia, ElviraLaria, Daniel Hectordinamica de solvatacioncumarinasciclodextrinashttps://purl.org/becyt/ford/1.4https://purl.org/becyt/ford/1We report molecular dynamics simulation results of equilibrium and dynamical characteristics pertaining to the solvation of the dye coumarine 153 (C153) trapped within hydrophobic cavities of di- and trimethylated -cyclodextrins (CD) in aqueous solutions. We found that stable configurations of the encapsulated probe are characterized by a slanted docking, in which the plane of the C153 lies mostly parallel to one of the glucose units of the CD.  In and out  dynamical modes of the encapsulated probe present very small amplitudes. The rotational dynamics of the trapped coumarine can be casted in terms of a simple model that includes diffusive motions within a local restrictive environment coupled to the overall rotational motion of the CD. We have examined the early stages of the solvation response of the environment following a vertical excitation of the probe. Regardless of the degree of the CD methylation, the water dynamical response seems to be completed within 2-3 ps, and does not differ substantially from the one observed for non-encapsulated probes. The CD response is characterized by a single, sub-picosecond relaxation that involves intramolecular motions. We also explored dynamical modes that could account for the recently reported persistence of Stokes shifts in the nanosecond time domain. In all cases, the only sources of ultraslow dynamics that we detected were those associated to gauche-trans interconversions in primary hydroxyl chains of the CD, which do not seem to be directly connected to the electronic excitation of the probe.Fil: Rodriguez, Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química, Física de los Materiales, Medioambiente y Energía. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química, Física de los Materiales, Medioambiente y Energía; Argentina. Comisión Nacional de Energía Atómica. Gerencia Química. CAC; ArgentinaFil: Martí, Jordi. Universidad Politécnica de Catalunya; EspañaFil: Guardia, Elvira. Universidad Politécnica de Catalunya; EspañaFil: Laria, Daniel Hector. Comisión Nacional de Energía Atómica. Gerencia Química. CAC; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química, Física de los Materiales, Medioambiente y Energía. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química, Física de los Materiales, Medioambiente y Energía; ArgentinaAmerican Chemical Society2008-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/103601Rodriguez, Javier; Martí, Jordi; Guardia, Elvira; Laria, Daniel Hector; Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins; American Chemical Society; Journal of Physical Chemistry B; 112; 30; 7-2008; 8990-89981089-56471520-6106CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://pubs.acs.org/doi/10.1021/jp8023765info:eu-repo/semantics/altIdentifier/doi/10.1021/jp8023765info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T09:55:01Zoai:ri.conicet.gov.ar:11336/103601instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 09:55:02.161CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins
title Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins
spellingShingle Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins
Rodriguez, Javier
dinamica de solvatacion
cumarinas
ciclodextrinas
title_short Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins
title_full Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins
title_fullStr Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins
title_full_unstemmed Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins
title_sort Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins
dc.creator.none.fl_str_mv Rodriguez, Javier
Martí, Jordi
Guardia, Elvira
Laria, Daniel Hector
author Rodriguez, Javier
author_facet Rodriguez, Javier
Martí, Jordi
Guardia, Elvira
Laria, Daniel Hector
author_role author
author2 Martí, Jordi
Guardia, Elvira
Laria, Daniel Hector
author2_role author
author
author
dc.subject.none.fl_str_mv dinamica de solvatacion
cumarinas
ciclodextrinas
topic dinamica de solvatacion
cumarinas
ciclodextrinas
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.4
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv We report molecular dynamics simulation results of equilibrium and dynamical characteristics pertaining to the solvation of the dye coumarine 153 (C153) trapped within hydrophobic cavities of di- and trimethylated -cyclodextrins (CD) in aqueous solutions. We found that stable configurations of the encapsulated probe are characterized by a slanted docking, in which the plane of the C153 lies mostly parallel to one of the glucose units of the CD.  In and out  dynamical modes of the encapsulated probe present very small amplitudes. The rotational dynamics of the trapped coumarine can be casted in terms of a simple model that includes diffusive motions within a local restrictive environment coupled to the overall rotational motion of the CD. We have examined the early stages of the solvation response of the environment following a vertical excitation of the probe. Regardless of the degree of the CD methylation, the water dynamical response seems to be completed within 2-3 ps, and does not differ substantially from the one observed for non-encapsulated probes. The CD response is characterized by a single, sub-picosecond relaxation that involves intramolecular motions. We also explored dynamical modes that could account for the recently reported persistence of Stokes shifts in the nanosecond time domain. In all cases, the only sources of ultraslow dynamics that we detected were those associated to gauche-trans interconversions in primary hydroxyl chains of the CD, which do not seem to be directly connected to the electronic excitation of the probe.
Fil: Rodriguez, Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química, Física de los Materiales, Medioambiente y Energía. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química, Física de los Materiales, Medioambiente y Energía; Argentina. Comisión Nacional de Energía Atómica. Gerencia Química. CAC; Argentina
Fil: Martí, Jordi. Universidad Politécnica de Catalunya; España
Fil: Guardia, Elvira. Universidad Politécnica de Catalunya; España
Fil: Laria, Daniel Hector. Comisión Nacional de Energía Atómica. Gerencia Química. CAC; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química, Física de los Materiales, Medioambiente y Energía. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química, Física de los Materiales, Medioambiente y Energía; Argentina
description We report molecular dynamics simulation results of equilibrium and dynamical characteristics pertaining to the solvation of the dye coumarine 153 (C153) trapped within hydrophobic cavities of di- and trimethylated -cyclodextrins (CD) in aqueous solutions. We found that stable configurations of the encapsulated probe are characterized by a slanted docking, in which the plane of the C153 lies mostly parallel to one of the glucose units of the CD.  In and out  dynamical modes of the encapsulated probe present very small amplitudes. The rotational dynamics of the trapped coumarine can be casted in terms of a simple model that includes diffusive motions within a local restrictive environment coupled to the overall rotational motion of the CD. We have examined the early stages of the solvation response of the environment following a vertical excitation of the probe. Regardless of the degree of the CD methylation, the water dynamical response seems to be completed within 2-3 ps, and does not differ substantially from the one observed for non-encapsulated probes. The CD response is characterized by a single, sub-picosecond relaxation that involves intramolecular motions. We also explored dynamical modes that could account for the recently reported persistence of Stokes shifts in the nanosecond time domain. In all cases, the only sources of ultraslow dynamics that we detected were those associated to gauche-trans interconversions in primary hydroxyl chains of the CD, which do not seem to be directly connected to the electronic excitation of the probe.
publishDate 2008
dc.date.none.fl_str_mv 2008-07
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/103601
Rodriguez, Javier; Martí, Jordi; Guardia, Elvira; Laria, Daniel Hector; Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins; American Chemical Society; Journal of Physical Chemistry B; 112; 30; 7-2008; 8990-8998
1089-5647
1520-6106
CONICET Digital
CONICET
url http://hdl.handle.net/11336/103601
identifier_str_mv Rodriguez, Javier; Martí, Jordi; Guardia, Elvira; Laria, Daniel Hector; Exploring the Picosecond Time Domain of the Solvation Dynamics of Coumarin 153 within β-Cyclodextrins; American Chemical Society; Journal of Physical Chemistry B; 112; 30; 7-2008; 8990-8998
1089-5647
1520-6106
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://pubs.acs.org/doi/10.1021/jp8023765
info:eu-repo/semantics/altIdentifier/doi/10.1021/jp8023765
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv American Chemical Society
publisher.none.fl_str_mv American Chemical Society
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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