Evolutionary flexibility in flooding response circuitry in angiosperms

Autores
Reynoso, Mauricio Alberto; Kajala, Kaisa; Bajic, Marko; West, Donnelly; Pauluzzi, Germain; Yao, Andrew I.; Hatch, Kathryn; Zumstein, Kristina; Woodhouse, Margaret; Rodríguez Medina, Joel; Sinha, Neelima; Brady, Siobhan M.; Deal, Roger; Bailey Serres, Julia
Año de publicación
2019
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Flooding due to extreme weather threatens crops and ecosystems. To understand variation in gene regulatory networks activated by submergence, we conducted a high-resolution analysis of chromatin accessibility and gene expression at three scales of transcript control in four angiosperms, ranging from a dryland-adapted wild species to a wetland crop. The data define a cohort of conserved submergenceactivated genes with signatures of overlapping cis regulation by four transcription factor families. Syntenic genes are more highly expressed than nonsyntenic genes, yet both can have the cis motifs and chromatin accessibility associated with submergence up-regulation.Whereas the flexible circuitry spans the eudicot-monocot divide, the frequency of specific cis motifs, extent of chromatin accessibility, and degree of submergence activation are more prevalent in the wetland crop and may have adaptive importance.
Fil: Reynoso, Mauricio Alberto. Center For Plant Cell Biology Riverside; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnol.conicet - la Plata. Centro de Endocrinología Exp.y Aplicada (i). Grupo Vinculado Cenexa-fcex-unlp; Argentina
Fil: Kajala, Kaisa. Utrecht University; Países Bajos. University of California at Davis; Estados Unidos
Fil: Bajic, Marko. University of Emory; Estados Unidos
Fil: West, Donnelly. University of California at Davis; Estados Unidos
Fil: Pauluzzi, Germain. University of California; Estados Unidos
Fil: Yao, Andrew I.. University of California at Davis; Estados Unidos
Fil: Hatch, Kathryn. University of Emory; Estados Unidos
Fil: Zumstein, Kristina. University of California at Davis; Estados Unidos
Fil: Woodhouse, Margaret. University of California at Davis; Estados Unidos
Fil: Rodríguez Medina, Joel. University of California at Davis; Estados Unidos
Fil: Sinha, Neelima. University of California at Davis; Estados Unidos
Fil: Brady, Siobhan M.. University of California at Davis; Estados Unidos
Fil: Deal, Roger. University of Emory; Estados Unidos
Fil: Bailey Serres, Julia. University of California at Davis; Estados Unidos. Utrecht University; Países Bajos
Materia
SUBMERGENCE
GENE REGULATORY NETWORKS
CHROMATIN ACCESSIBILITY
ANGIOSPERMS
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/130310
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/130310
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Evolutionary flexibility in flooding response circuitry in angiospermsReynoso, Mauricio AlbertoKajala, KaisaBajic, MarkoWest, DonnellyPauluzzi, GermainYao, Andrew I.Hatch, KathrynZumstein, KristinaWoodhouse, MargaretRodríguez Medina, JoelSinha, NeelimaBrady, Siobhan M.Deal, RogerBailey Serres, JuliaSUBMERGENCEGENE REGULATORY NETWORKSCHROMATIN ACCESSIBILITYANGIOSPERMShttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1https://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Flooding due to extreme weather threatens crops and ecosystems. To understand variation in gene regulatory networks activated by submergence, we conducted a high-resolution analysis of chromatin accessibility and gene expression at three scales of transcript control in four angiosperms, ranging from a dryland-adapted wild species to a wetland crop. The data define a cohort of conserved submergenceactivated genes with signatures of overlapping cis regulation by four transcription factor families. Syntenic genes are more highly expressed than nonsyntenic genes, yet both can have the cis motifs and chromatin accessibility associated with submergence up-regulation.Whereas the flexible circuitry spans the eudicot-monocot divide, the frequency of specific cis motifs, extent of chromatin accessibility, and degree of submergence activation are more prevalent in the wetland crop and may have adaptive importance.Fil: Reynoso, Mauricio Alberto. Center For Plant Cell Biology Riverside; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnol.conicet - la Plata. Centro de Endocrinología Exp.y Aplicada (i). Grupo Vinculado Cenexa-fcex-unlp; ArgentinaFil: Kajala, Kaisa. Utrecht University; Países Bajos. University of California at Davis; Estados UnidosFil: Bajic, Marko. University of Emory; Estados UnidosFil: West, Donnelly. University of California at Davis; Estados UnidosFil: Pauluzzi, Germain. University of California; Estados UnidosFil: Yao, Andrew I.. University of California at Davis; Estados UnidosFil: Hatch, Kathryn. University of Emory; Estados UnidosFil: Zumstein, Kristina. University of California at Davis; Estados UnidosFil: Woodhouse, Margaret. University of California at Davis; Estados UnidosFil: Rodríguez Medina, Joel. University of California at Davis; Estados UnidosFil: Sinha, Neelima. University of California at Davis; Estados UnidosFil: Brady, Siobhan M.. University of California at Davis; Estados UnidosFil: Deal, Roger. University of Emory; Estados UnidosFil: Bailey Serres, Julia. University of California at Davis; Estados Unidos. Utrecht University; Países BajosAmerican Association for the Advancement of Science2019-09-20info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/130310Reynoso, Mauricio Alberto; Kajala, Kaisa; Bajic, Marko; West, Donnelly; Pauluzzi, Germain; et al.; Evolutionary flexibility in flooding response circuitry in angiosperms; American Association for the Advancement of Science; Science; 365; 6459; 20-9-2019; 1291-12950036-8075CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://www.sciencemag.org/lookup/doi/10.1126/science.aax8862info:eu-repo/semantics/altIdentifier/doi/10.1126/science.aax8862info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T10:29:18Zoai:ri.conicet.gov.ar:11336/130310instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 10:29:19.178CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Evolutionary flexibility in flooding response circuitry in angiosperms
title Evolutionary flexibility in flooding response circuitry in angiosperms
spellingShingle Evolutionary flexibility in flooding response circuitry in angiosperms
Reynoso, Mauricio Alberto
SUBMERGENCE
GENE REGULATORY NETWORKS
CHROMATIN ACCESSIBILITY
ANGIOSPERMS
title_short Evolutionary flexibility in flooding response circuitry in angiosperms
title_full Evolutionary flexibility in flooding response circuitry in angiosperms
title_fullStr Evolutionary flexibility in flooding response circuitry in angiosperms
title_full_unstemmed Evolutionary flexibility in flooding response circuitry in angiosperms
title_sort Evolutionary flexibility in flooding response circuitry in angiosperms
dc.creator.none.fl_str_mv Reynoso, Mauricio Alberto
Kajala, Kaisa
Bajic, Marko
West, Donnelly
Pauluzzi, Germain
Yao, Andrew I.
Hatch, Kathryn
Zumstein, Kristina
Woodhouse, Margaret
Rodríguez Medina, Joel
Sinha, Neelima
Brady, Siobhan M.
Deal, Roger
Bailey Serres, Julia
author Reynoso, Mauricio Alberto
author_facet Reynoso, Mauricio Alberto
Kajala, Kaisa
Bajic, Marko
West, Donnelly
Pauluzzi, Germain
Yao, Andrew I.
Hatch, Kathryn
Zumstein, Kristina
Woodhouse, Margaret
Rodríguez Medina, Joel
Sinha, Neelima
Brady, Siobhan M.
Deal, Roger
Bailey Serres, Julia
author_role author
author2 Kajala, Kaisa
Bajic, Marko
West, Donnelly
Pauluzzi, Germain
Yao, Andrew I.
Hatch, Kathryn
Zumstein, Kristina
Woodhouse, Margaret
Rodríguez Medina, Joel
Sinha, Neelima
Brady, Siobhan M.
Deal, Roger
Bailey Serres, Julia
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv SUBMERGENCE
GENE REGULATORY NETWORKS
CHROMATIN ACCESSIBILITY
ANGIOSPERMS
topic SUBMERGENCE
GENE REGULATORY NETWORKS
CHROMATIN ACCESSIBILITY
ANGIOSPERMS
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Flooding due to extreme weather threatens crops and ecosystems. To understand variation in gene regulatory networks activated by submergence, we conducted a high-resolution analysis of chromatin accessibility and gene expression at three scales of transcript control in four angiosperms, ranging from a dryland-adapted wild species to a wetland crop. The data define a cohort of conserved submergenceactivated genes with signatures of overlapping cis regulation by four transcription factor families. Syntenic genes are more highly expressed than nonsyntenic genes, yet both can have the cis motifs and chromatin accessibility associated with submergence up-regulation.Whereas the flexible circuitry spans the eudicot-monocot divide, the frequency of specific cis motifs, extent of chromatin accessibility, and degree of submergence activation are more prevalent in the wetland crop and may have adaptive importance.
Fil: Reynoso, Mauricio Alberto. Center For Plant Cell Biology Riverside; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnol.conicet - la Plata. Centro de Endocrinología Exp.y Aplicada (i). Grupo Vinculado Cenexa-fcex-unlp; Argentina
Fil: Kajala, Kaisa. Utrecht University; Países Bajos. University of California at Davis; Estados Unidos
Fil: Bajic, Marko. University of Emory; Estados Unidos
Fil: West, Donnelly. University of California at Davis; Estados Unidos
Fil: Pauluzzi, Germain. University of California; Estados Unidos
Fil: Yao, Andrew I.. University of California at Davis; Estados Unidos
Fil: Hatch, Kathryn. University of Emory; Estados Unidos
Fil: Zumstein, Kristina. University of California at Davis; Estados Unidos
Fil: Woodhouse, Margaret. University of California at Davis; Estados Unidos
Fil: Rodríguez Medina, Joel. University of California at Davis; Estados Unidos
Fil: Sinha, Neelima. University of California at Davis; Estados Unidos
Fil: Brady, Siobhan M.. University of California at Davis; Estados Unidos
Fil: Deal, Roger. University of Emory; Estados Unidos
Fil: Bailey Serres, Julia. University of California at Davis; Estados Unidos. Utrecht University; Países Bajos
description Flooding due to extreme weather threatens crops and ecosystems. To understand variation in gene regulatory networks activated by submergence, we conducted a high-resolution analysis of chromatin accessibility and gene expression at three scales of transcript control in four angiosperms, ranging from a dryland-adapted wild species to a wetland crop. The data define a cohort of conserved submergenceactivated genes with signatures of overlapping cis regulation by four transcription factor families. Syntenic genes are more highly expressed than nonsyntenic genes, yet both can have the cis motifs and chromatin accessibility associated with submergence up-regulation.Whereas the flexible circuitry spans the eudicot-monocot divide, the frequency of specific cis motifs, extent of chromatin accessibility, and degree of submergence activation are more prevalent in the wetland crop and may have adaptive importance.
publishDate 2019
dc.date.none.fl_str_mv 2019-09-20
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/130310
Reynoso, Mauricio Alberto; Kajala, Kaisa; Bajic, Marko; West, Donnelly; Pauluzzi, Germain; et al.; Evolutionary flexibility in flooding response circuitry in angiosperms; American Association for the Advancement of Science; Science; 365; 6459; 20-9-2019; 1291-1295
0036-8075
CONICET Digital
CONICET
url http://hdl.handle.net/11336/130310
identifier_str_mv Reynoso, Mauricio Alberto; Kajala, Kaisa; Bajic, Marko; West, Donnelly; Pauluzzi, Germain; et al.; Evolutionary flexibility in flooding response circuitry in angiosperms; American Association for the Advancement of Science; Science; 365; 6459; 20-9-2019; 1291-1295
0036-8075
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/http://www.sciencemag.org/lookup/doi/10.1126/science.aax8862
info:eu-repo/semantics/altIdentifier/doi/10.1126/science.aax8862
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv American Association for the Advancement of Science
publisher.none.fl_str_mv American Association for the Advancement of Science
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.070432

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