Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere

Autores
Berckx, Fede; Wibber, Daniel; Brachmann, Andreas; Morrison, Ciara; Obaid, Nadia B.; Blom, Jochen; Kalinowski Jörn; Wall, Luis Gabriel; Pawlolwski, Katharina
Año de publicación
2024
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Coriariaceae are a small family of 14-17 species and subspecies that have a current global, but disjunct, distribution. All species can form root nodules in symbiosis with diazotrophic Frankia cluster-2 strains, which make up the earliest divergent symbiotic clade within this bacterial genus. Studies on Frankia cluster-2 mostly have focused on strains occurring in the northern hemisphere. Except for one strain from Papua New Guinea, namely Candidatus Frankia meridionalis Cppng1, no whole genome of Frankia associated with Coriaria occurring in the southern hemisphere has been published thus far, yet the majority of the plant family’s species occurs here. We present field sampling data of novel Frankia cluster-2 strains, representing two novel species, which are associated with Coriaria arborea and Coriaria sarmentosa in New Zealand, and with Coriaria ruscifolia in Patagonia (Argentina), in addition to identifying Ca. F. meridionalis present in New Zealand. The novel Frankia species were found to be closely related to both Ca. F. meridionalis, and a Frankia species occurring in the Philippines, Taiwan, and Japan. Our data suggest that the different Frankia cluster-2 species diverged early after becoming symbiotic circa 100 million years ago.
Fil: Berckx, Fede. Stockholms Universitet; Suecia
Fil: Wibber, Daniel. Universitat Bielefeld; Alemania
Fil: Brachmann, Andreas. No especifíca;
Fil: Morrison, Ciara. Stockholms Universitet; Suecia
Fil: Obaid, Nadia B.. Stockholms Universitet; Suecia
Fil: Blom, Jochen. Justus Liebig Universitat Giessen.; Alemania
Fil: Kalinowski Jörn. Universitat Bielefeld; Alemania
Fil: Wall, Luis Gabriel. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Pawlolwski, Katharina. Stockholms Universitet; Suecia
Materia
ACTINORHIZAL SYMBIOSIS
CORIARIACEAE
FRANKIA
MICROBIOME
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/236801
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/236801
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphereBerckx, FedeWibber, DanielBrachmann, AndreasMorrison, CiaraObaid, Nadia B.Blom, JochenKalinowski JörnWall, Luis GabrielPawlolwski, KatharinaACTINORHIZAL SYMBIOSISCORIARIACEAEFRANKIAMICROBIOMEhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Coriariaceae are a small family of 14-17 species and subspecies that have a current global, but disjunct, distribution. All species can form root nodules in symbiosis with diazotrophic Frankia cluster-2 strains, which make up the earliest divergent symbiotic clade within this bacterial genus. Studies on Frankia cluster-2 mostly have focused on strains occurring in the northern hemisphere. Except for one strain from Papua New Guinea, namely Candidatus Frankia meridionalis Cppng1, no whole genome of Frankia associated with Coriaria occurring in the southern hemisphere has been published thus far, yet the majority of the plant family’s species occurs here. We present field sampling data of novel Frankia cluster-2 strains, representing two novel species, which are associated with Coriaria arborea and Coriaria sarmentosa in New Zealand, and with Coriaria ruscifolia in Patagonia (Argentina), in addition to identifying Ca. F. meridionalis present in New Zealand. The novel Frankia species were found to be closely related to both Ca. F. meridionalis, and a Frankia species occurring in the Philippines, Taiwan, and Japan. Our data suggest that the different Frankia cluster-2 species diverged early after becoming symbiotic circa 100 million years ago.Fil: Berckx, Fede. Stockholms Universitet; SueciaFil: Wibber, Daniel. Universitat Bielefeld; AlemaniaFil: Brachmann, Andreas. No especifíca;Fil: Morrison, Ciara. Stockholms Universitet; SueciaFil: Obaid, Nadia B.. Stockholms Universitet; SueciaFil: Blom, Jochen. Justus Liebig Universitat Giessen.; AlemaniaFil: Kalinowski Jörn. Universitat Bielefeld; AlemaniaFil: Wall, Luis Gabriel. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Pawlolwski, Katharina. Stockholms Universitet; SueciaOxford University Press2024-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/236801Berckx, Fede; Wibber, Daniel; Brachmann, Andreas; Morrison, Ciara; Obaid, Nadia B.; et al.; Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere; Oxford University Press; FEMS Microbiology Ecology; 100; 5; 3-2024; 1-131574-6941CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1093/femsec/fiae042info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:58:06Zoai:ri.conicet.gov.ar:11336/236801instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:58:07.034CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere
title Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere
spellingShingle Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere
Berckx, Fede
ACTINORHIZAL SYMBIOSIS
CORIARIACEAE
FRANKIA
MICROBIOME
title_short Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere
title_full Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere
title_fullStr Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere
title_full_unstemmed Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere
title_sort Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere
dc.creator.none.fl_str_mv Berckx, Fede
Wibber, Daniel
Brachmann, Andreas
Morrison, Ciara
Obaid, Nadia B.
Blom, Jochen
Kalinowski Jörn
Wall, Luis Gabriel
Pawlolwski, Katharina
author Berckx, Fede
author_facet Berckx, Fede
Wibber, Daniel
Brachmann, Andreas
Morrison, Ciara
Obaid, Nadia B.
Blom, Jochen
Kalinowski Jörn
Wall, Luis Gabriel
Pawlolwski, Katharina
author_role author
author2 Wibber, Daniel
Brachmann, Andreas
Morrison, Ciara
Obaid, Nadia B.
Blom, Jochen
Kalinowski Jörn
Wall, Luis Gabriel
Pawlolwski, Katharina
author2_role author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv ACTINORHIZAL SYMBIOSIS
CORIARIACEAE
FRANKIA
MICROBIOME
topic ACTINORHIZAL SYMBIOSIS
CORIARIACEAE
FRANKIA
MICROBIOME
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Coriariaceae are a small family of 14-17 species and subspecies that have a current global, but disjunct, distribution. All species can form root nodules in symbiosis with diazotrophic Frankia cluster-2 strains, which make up the earliest divergent symbiotic clade within this bacterial genus. Studies on Frankia cluster-2 mostly have focused on strains occurring in the northern hemisphere. Except for one strain from Papua New Guinea, namely Candidatus Frankia meridionalis Cppng1, no whole genome of Frankia associated with Coriaria occurring in the southern hemisphere has been published thus far, yet the majority of the plant family’s species occurs here. We present field sampling data of novel Frankia cluster-2 strains, representing two novel species, which are associated with Coriaria arborea and Coriaria sarmentosa in New Zealand, and with Coriaria ruscifolia in Patagonia (Argentina), in addition to identifying Ca. F. meridionalis present in New Zealand. The novel Frankia species were found to be closely related to both Ca. F. meridionalis, and a Frankia species occurring in the Philippines, Taiwan, and Japan. Our data suggest that the different Frankia cluster-2 species diverged early after becoming symbiotic circa 100 million years ago.
Fil: Berckx, Fede. Stockholms Universitet; Suecia
Fil: Wibber, Daniel. Universitat Bielefeld; Alemania
Fil: Brachmann, Andreas. No especifíca;
Fil: Morrison, Ciara. Stockholms Universitet; Suecia
Fil: Obaid, Nadia B.. Stockholms Universitet; Suecia
Fil: Blom, Jochen. Justus Liebig Universitat Giessen.; Alemania
Fil: Kalinowski Jörn. Universitat Bielefeld; Alemania
Fil: Wall, Luis Gabriel. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Pawlolwski, Katharina. Stockholms Universitet; Suecia
description Coriariaceae are a small family of 14-17 species and subspecies that have a current global, but disjunct, distribution. All species can form root nodules in symbiosis with diazotrophic Frankia cluster-2 strains, which make up the earliest divergent symbiotic clade within this bacterial genus. Studies on Frankia cluster-2 mostly have focused on strains occurring in the northern hemisphere. Except for one strain from Papua New Guinea, namely Candidatus Frankia meridionalis Cppng1, no whole genome of Frankia associated with Coriaria occurring in the southern hemisphere has been published thus far, yet the majority of the plant family’s species occurs here. We present field sampling data of novel Frankia cluster-2 strains, representing two novel species, which are associated with Coriaria arborea and Coriaria sarmentosa in New Zealand, and with Coriaria ruscifolia in Patagonia (Argentina), in addition to identifying Ca. F. meridionalis present in New Zealand. The novel Frankia species were found to be closely related to both Ca. F. meridionalis, and a Frankia species occurring in the Philippines, Taiwan, and Japan. Our data suggest that the different Frankia cluster-2 species diverged early after becoming symbiotic circa 100 million years ago.
publishDate 2024
dc.date.none.fl_str_mv 2024-03
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/236801
Berckx, Fede; Wibber, Daniel; Brachmann, Andreas; Morrison, Ciara; Obaid, Nadia B.; et al.; Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere; Oxford University Press; FEMS Microbiology Ecology; 100; 5; 3-2024; 1-13
1574-6941
CONICET Digital
CONICET
url http://hdl.handle.net/11336/236801
identifier_str_mv Berckx, Fede; Wibber, Daniel; Brachmann, Andreas; Morrison, Ciara; Obaid, Nadia B.; et al.; Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere; Oxford University Press; FEMS Microbiology Ecology; 100; 5; 3-2024; 1-13
1574-6941
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1093/femsec/fiae042
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1844613734056591360
score 13.070432

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