Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

Autores
Griesmann, Maximilian; Chang, Yue; Liu, Xin; Song, Yue; Haberer, Georg; Crook, Matthew B.; Billault-Penneteau, Benjamin; Lauressergues, Dominique; Keller, Jean; Imanishi, Leandro Ezequiel; Roswanjaya, Yuda Purwana; Kohlen, Wouter; Pujic, Petar; Battenberg, Kai; Alloisio, Nicole; Liang, Yuhu; Hilhorst, Henk; Salgado, Marco G.; Hocher, Valerie; Gherbi, Hassen; Svistoonoff, Sergio; Doyle, Jeff J.; He, Shixu; Xu, Yan; Xu, Shanyun; Qu, Jing; Gao, Qiang; Fang, Xiaodong; Fu, Yuan; Normand, Philippe; Berry, Alison M.; Wall, Luis Gabriel; Ané, Jean Michel; Pawlowski, Katharina; Xu, Xun; Yang, Huanming; Spannagl, Manuel; Mayer, Klaus F.X.; Wong, Gane Ka-Shu; Parniske, Martin; Delaux, Pierre Marc; Cheng, Shifeng
Año de publicación
2018
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The root nodule symbiosis of plants with nitrogen-fixing bacteria affects global nitrogen cycles and food production but is restricted to a subset of genera within a single clade of flowering plants. To explore the genetic basis for this scattered occurrence, we sequenced the genomes of 10 plant species covering the diversity of nodule morphotypes, bacterial symbionts, and infection strategies. In a genome-wide comparative analysis of a total of 37 plant species, we discovered signatures of multiple independent loss-of-function events in the indispensable symbiotic regulator NODULE INCEPTION in 10 of 13 genomes of nonnodulating species within this clade. The discovery that multiple independent losses shaped the present-day distribution of nitrogen-fixing root nodule symbiosis in plants reveals a phylogenetically wider distribution in evolutionary history and a so-far-underestimated selection pressure against this symbiosis.
Fil: Griesmann, Maximilian. Ludwig Maximilians Universitat; Alemania
Fil: Chang, Yue. No especifíca;
Fil: Liu, Xin. No especifíca;
Fil: Song, Yue. No especifíca;
Fil: Haberer, Georg. Helmholtz Center Munich; Alemania
Fil: Crook, Matthew B.. Weber State University; Estados Unidos
Fil: Billault-Penneteau, Benjamin. Ludwig Maximilians Universitat; Alemania
Fil: Lauressergues, Dominique. Université de Toulouse; Francia
Fil: Keller, Jean. Université de Toulouse; Francia
Fil: Imanishi, Leandro Ezequiel. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Roswanjaya, Yuda Purwana. University of Agriculture Wageningen; Países Bajos
Fil: Kohlen, Wouter. University of Agriculture Wageningen; Países Bajos
Fil: Pujic, Petar. Université de Lyon; Francia
Fil: Battenberg, Kai. University of California at Davis; Estados Unidos
Fil: Alloisio, Nicole. No especifíca;
Fil: Liang, Yuhu. No especifíca;
Fil: Hilhorst, Henk. No especifíca;
Fil: Salgado, Marco G.. Stockholms Universitet; Suecia
Fil: Hocher, Valerie. Université Montpellier II; Francia
Fil: Gherbi, Hassen. Université Montpellier II; Francia
Fil: Svistoonoff, Sergio. Université Montpellier II; Francia
Fil: Doyle, Jeff J.. Cornell University; Estados Unidos
Fil: He, Shixu. No especifíca;
Fil: Xu, Yan. China National Genebank; China
Fil: Xu, Shanyun. China National Genebank; China
Fil: Qu, Jing. China National Genebank; China
Fil: Gao, Qiang. No especifíca;
Fil: Fang, Xiaodong. No especifíca;
Fil: Fu, Yuan. China National Genebank; China
Fil: Normand, Philippe. Universite Lyon 2; Francia
Fil: Berry, Alison M.. University of California at Davis; Estados Unidos
Fil: Wall, Luis Gabriel. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Ané, Jean Michel. University of Wisconsin; Estados Unidos
Fil: Pawlowski, Katharina. Stockholms Universitet; Suecia
Fil: Xu, Xun. China National Genebank; China
Fil: Yang, Huanming. James D. Watson Institute Of Genome Sciences; China
Fil: Spannagl, Manuel. Helmholtz Center Munich German Research Center For Environmental Health; Alemania
Fil: Mayer, Klaus F.X.. Helmholtz Center Munich German Research Center For Environmental Health; Alemania
Fil: Wong, Gane Ka-Shu. University of Alberta; Canadá
Fil: Parniske, Martin. Ludwig Maximilians Universitat; Alemania
Fil: Delaux, Pierre Marc. No especifíca;
Fil: Cheng, Shifeng. China National Genebank; China
Materia
SYMBIOSIS
NITROGEN FIXATION
LEGUMES
ACTINORHIZA
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/117667
Acceder
id CONICETDig_91b351a702dc7121023758d8ab24decf
oai_identifier_str oai:ri.conicet.gov.ar:11336/117667
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosisGriesmann, MaximilianChang, YueLiu, XinSong, YueHaberer, GeorgCrook, Matthew B.Billault-Penneteau, BenjaminLauressergues, DominiqueKeller, JeanImanishi, Leandro EzequielRoswanjaya, Yuda PurwanaKohlen, WouterPujic, PetarBattenberg, KaiAlloisio, NicoleLiang, YuhuHilhorst, HenkSalgado, Marco G.Hocher, ValerieGherbi, HassenSvistoonoff, SergioDoyle, Jeff J.He, ShixuXu, YanXu, ShanyunQu, JingGao, QiangFang, XiaodongFu, YuanNormand, PhilippeBerry, Alison M.Wall, Luis GabrielAné, Jean MichelPawlowski, KatharinaXu, XunYang, HuanmingSpannagl, ManuelMayer, Klaus F.X.Wong, Gane Ka-ShuParniske, MartinDelaux, Pierre MarcCheng, ShifengSYMBIOSISNITROGEN FIXATIONLEGUMESACTINORHIZAhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The root nodule symbiosis of plants with nitrogen-fixing bacteria affects global nitrogen cycles and food production but is restricted to a subset of genera within a single clade of flowering plants. To explore the genetic basis for this scattered occurrence, we sequenced the genomes of 10 plant species covering the diversity of nodule morphotypes, bacterial symbionts, and infection strategies. In a genome-wide comparative analysis of a total of 37 plant species, we discovered signatures of multiple independent loss-of-function events in the indispensable symbiotic regulator NODULE INCEPTION in 10 of 13 genomes of nonnodulating species within this clade. The discovery that multiple independent losses shaped the present-day distribution of nitrogen-fixing root nodule symbiosis in plants reveals a phylogenetically wider distribution in evolutionary history and a so-far-underestimated selection pressure against this symbiosis.Fil: Griesmann, Maximilian. Ludwig Maximilians Universitat; AlemaniaFil: Chang, Yue. No especifíca;Fil: Liu, Xin. No especifíca;Fil: Song, Yue. No especifíca;Fil: Haberer, Georg. Helmholtz Center Munich; AlemaniaFil: Crook, Matthew B.. Weber State University; Estados UnidosFil: Billault-Penneteau, Benjamin. Ludwig Maximilians Universitat; AlemaniaFil: Lauressergues, Dominique. Université de Toulouse; FranciaFil: Keller, Jean. Université de Toulouse; FranciaFil: Imanishi, Leandro Ezequiel. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Roswanjaya, Yuda Purwana. University of Agriculture Wageningen; Países BajosFil: Kohlen, Wouter. University of Agriculture Wageningen; Países BajosFil: Pujic, Petar. Université de Lyon; FranciaFil: Battenberg, Kai. University of California at Davis; Estados UnidosFil: Alloisio, Nicole. No especifíca;Fil: Liang, Yuhu. No especifíca;Fil: Hilhorst, Henk. No especifíca;Fil: Salgado, Marco G.. Stockholms Universitet; SueciaFil: Hocher, Valerie. Université Montpellier II; FranciaFil: Gherbi, Hassen. Université Montpellier II; FranciaFil: Svistoonoff, Sergio. Université Montpellier II; FranciaFil: Doyle, Jeff J.. Cornell University; Estados UnidosFil: He, Shixu. No especifíca;Fil: Xu, Yan. China National Genebank; ChinaFil: Xu, Shanyun. China National Genebank; ChinaFil: Qu, Jing. China National Genebank; ChinaFil: Gao, Qiang. No especifíca;Fil: Fang, Xiaodong. No especifíca;Fil: Fu, Yuan. China National Genebank; ChinaFil: Normand, Philippe. Universite Lyon 2; FranciaFil: Berry, Alison M.. University of California at Davis; Estados UnidosFil: Wall, Luis Gabriel. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Ané, Jean Michel. University of Wisconsin; Estados UnidosFil: Pawlowski, Katharina. Stockholms Universitet; SueciaFil: Xu, Xun. China National Genebank; ChinaFil: Yang, Huanming. James D. Watson Institute Of Genome Sciences; ChinaFil: Spannagl, Manuel. Helmholtz Center Munich German Research Center For Environmental Health; AlemaniaFil: Mayer, Klaus F.X.. Helmholtz Center Munich German Research Center For Environmental Health; AlemaniaFil: Wong, Gane Ka-Shu. University of Alberta; CanadáFil: Parniske, Martin. Ludwig Maximilians Universitat; AlemaniaFil: Delaux, Pierre Marc. No especifíca;Fil: Cheng, Shifeng. China National Genebank; ChinaAmerican Association for the Advancement of Science2018-05info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/117667Griesmann, Maximilian; Chang, Yue; Liu, Xin; Song, Yue; Haberer, Georg; et al.; Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis; American Association for the Advancement of Science; Science; 361; 6398; 5-2018; 1-180036-8075CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1126/science.aat1743info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-11-05T09:51:10Zoai:ri.conicet.gov.ar:11336/117667instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-11-05 09:51:11.048CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
title Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
spellingShingle Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
Griesmann, Maximilian
SYMBIOSIS
NITROGEN FIXATION
LEGUMES
ACTINORHIZA
title_short Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
title_full Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
title_fullStr Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
title_full_unstemmed Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
title_sort Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
dc.creator.none.fl_str_mv Griesmann, Maximilian
Chang, Yue
Liu, Xin
Song, Yue
Haberer, Georg
Crook, Matthew B.
Billault-Penneteau, Benjamin
Lauressergues, Dominique
Keller, Jean
Imanishi, Leandro Ezequiel
Roswanjaya, Yuda Purwana
Kohlen, Wouter
Pujic, Petar
Battenberg, Kai
Alloisio, Nicole
Liang, Yuhu
Hilhorst, Henk
Salgado, Marco G.
Hocher, Valerie
Gherbi, Hassen
Svistoonoff, Sergio
Doyle, Jeff J.
He, Shixu
Xu, Yan
Xu, Shanyun
Qu, Jing
Gao, Qiang
Fang, Xiaodong
Fu, Yuan
Normand, Philippe
Berry, Alison M.
Wall, Luis Gabriel
Ané, Jean Michel
Pawlowski, Katharina
Xu, Xun
Yang, Huanming
Spannagl, Manuel
Mayer, Klaus F.X.
Wong, Gane Ka-Shu
Parniske, Martin
Delaux, Pierre Marc
Cheng, Shifeng
author Griesmann, Maximilian
author_facet Griesmann, Maximilian
Chang, Yue
Liu, Xin
Song, Yue
Haberer, Georg
Crook, Matthew B.
Billault-Penneteau, Benjamin
Lauressergues, Dominique
Keller, Jean
Imanishi, Leandro Ezequiel
Roswanjaya, Yuda Purwana
Kohlen, Wouter
Pujic, Petar
Battenberg, Kai
Alloisio, Nicole
Liang, Yuhu
Hilhorst, Henk
Salgado, Marco G.
Hocher, Valerie
Gherbi, Hassen
Svistoonoff, Sergio
Doyle, Jeff J.
He, Shixu
Xu, Yan
Xu, Shanyun
Qu, Jing
Gao, Qiang
Fang, Xiaodong
Fu, Yuan
Normand, Philippe
Berry, Alison M.
Wall, Luis Gabriel
Ané, Jean Michel
Pawlowski, Katharina
Xu, Xun
Yang, Huanming
Spannagl, Manuel
Mayer, Klaus F.X.
Wong, Gane Ka-Shu
Parniske, Martin
Delaux, Pierre Marc
Cheng, Shifeng
author_role author
author2 Chang, Yue
Liu, Xin
Song, Yue
Haberer, Georg
Crook, Matthew B.
Billault-Penneteau, Benjamin
Lauressergues, Dominique
Keller, Jean
Imanishi, Leandro Ezequiel
Roswanjaya, Yuda Purwana
Kohlen, Wouter
Pujic, Petar
Battenberg, Kai
Alloisio, Nicole
Liang, Yuhu
Hilhorst, Henk
Salgado, Marco G.
Hocher, Valerie
Gherbi, Hassen
Svistoonoff, Sergio
Doyle, Jeff J.
He, Shixu
Xu, Yan
Xu, Shanyun
Qu, Jing
Gao, Qiang
Fang, Xiaodong
Fu, Yuan
Normand, Philippe
Berry, Alison M.
Wall, Luis Gabriel
Ané, Jean Michel
Pawlowski, Katharina
Xu, Xun
Yang, Huanming
Spannagl, Manuel
Mayer, Klaus F.X.
Wong, Gane Ka-Shu
Parniske, Martin
Delaux, Pierre Marc
Cheng, Shifeng
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv SYMBIOSIS
NITROGEN FIXATION
LEGUMES
ACTINORHIZA
topic SYMBIOSIS
NITROGEN FIXATION
LEGUMES
ACTINORHIZA
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The root nodule symbiosis of plants with nitrogen-fixing bacteria affects global nitrogen cycles and food production but is restricted to a subset of genera within a single clade of flowering plants. To explore the genetic basis for this scattered occurrence, we sequenced the genomes of 10 plant species covering the diversity of nodule morphotypes, bacterial symbionts, and infection strategies. In a genome-wide comparative analysis of a total of 37 plant species, we discovered signatures of multiple independent loss-of-function events in the indispensable symbiotic regulator NODULE INCEPTION in 10 of 13 genomes of nonnodulating species within this clade. The discovery that multiple independent losses shaped the present-day distribution of nitrogen-fixing root nodule symbiosis in plants reveals a phylogenetically wider distribution in evolutionary history and a so-far-underestimated selection pressure against this symbiosis.
Fil: Griesmann, Maximilian. Ludwig Maximilians Universitat; Alemania
Fil: Chang, Yue. No especifíca;
Fil: Liu, Xin. No especifíca;
Fil: Song, Yue. No especifíca;
Fil: Haberer, Georg. Helmholtz Center Munich; Alemania
Fil: Crook, Matthew B.. Weber State University; Estados Unidos
Fil: Billault-Penneteau, Benjamin. Ludwig Maximilians Universitat; Alemania
Fil: Lauressergues, Dominique. Université de Toulouse; Francia
Fil: Keller, Jean. Université de Toulouse; Francia
Fil: Imanishi, Leandro Ezequiel. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Roswanjaya, Yuda Purwana. University of Agriculture Wageningen; Países Bajos
Fil: Kohlen, Wouter. University of Agriculture Wageningen; Países Bajos
Fil: Pujic, Petar. Université de Lyon; Francia
Fil: Battenberg, Kai. University of California at Davis; Estados Unidos
Fil: Alloisio, Nicole. No especifíca;
Fil: Liang, Yuhu. No especifíca;
Fil: Hilhorst, Henk. No especifíca;
Fil: Salgado, Marco G.. Stockholms Universitet; Suecia
Fil: Hocher, Valerie. Université Montpellier II; Francia
Fil: Gherbi, Hassen. Université Montpellier II; Francia
Fil: Svistoonoff, Sergio. Université Montpellier II; Francia
Fil: Doyle, Jeff J.. Cornell University; Estados Unidos
Fil: He, Shixu. No especifíca;
Fil: Xu, Yan. China National Genebank; China
Fil: Xu, Shanyun. China National Genebank; China
Fil: Qu, Jing. China National Genebank; China
Fil: Gao, Qiang. No especifíca;
Fil: Fang, Xiaodong. No especifíca;
Fil: Fu, Yuan. China National Genebank; China
Fil: Normand, Philippe. Universite Lyon 2; Francia
Fil: Berry, Alison M.. University of California at Davis; Estados Unidos
Fil: Wall, Luis Gabriel. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Ané, Jean Michel. University of Wisconsin; Estados Unidos
Fil: Pawlowski, Katharina. Stockholms Universitet; Suecia
Fil: Xu, Xun. China National Genebank; China
Fil: Yang, Huanming. James D. Watson Institute Of Genome Sciences; China
Fil: Spannagl, Manuel. Helmholtz Center Munich German Research Center For Environmental Health; Alemania
Fil: Mayer, Klaus F.X.. Helmholtz Center Munich German Research Center For Environmental Health; Alemania
Fil: Wong, Gane Ka-Shu. University of Alberta; Canadá
Fil: Parniske, Martin. Ludwig Maximilians Universitat; Alemania
Fil: Delaux, Pierre Marc. No especifíca;
Fil: Cheng, Shifeng. China National Genebank; China
description The root nodule symbiosis of plants with nitrogen-fixing bacteria affects global nitrogen cycles and food production but is restricted to a subset of genera within a single clade of flowering plants. To explore the genetic basis for this scattered occurrence, we sequenced the genomes of 10 plant species covering the diversity of nodule morphotypes, bacterial symbionts, and infection strategies. In a genome-wide comparative analysis of a total of 37 plant species, we discovered signatures of multiple independent loss-of-function events in the indispensable symbiotic regulator NODULE INCEPTION in 10 of 13 genomes of nonnodulating species within this clade. The discovery that multiple independent losses shaped the present-day distribution of nitrogen-fixing root nodule symbiosis in plants reveals a phylogenetically wider distribution in evolutionary history and a so-far-underestimated selection pressure against this symbiosis.
publishDate 2018
dc.date.none.fl_str_mv 2018-05
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/117667
Griesmann, Maximilian; Chang, Yue; Liu, Xin; Song, Yue; Haberer, Georg; et al.; Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis; American Association for the Advancement of Science; Science; 361; 6398; 5-2018; 1-18
0036-8075
CONICET Digital
CONICET
url http://hdl.handle.net/11336/117667
identifier_str_mv Griesmann, Maximilian; Chang, Yue; Liu, Xin; Song, Yue; Haberer, Georg; et al.; Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis; American Association for the Advancement of Science; Science; 361; 6398; 5-2018; 1-18
0036-8075
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1126/science.aat1743
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv American Association for the Advancement of Science
publisher.none.fl_str_mv American Association for the Advancement of Science
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.087074

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