Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster

Autores
Nazer, Ezequiel; Dale, Ryan K.; Palmer, Cameron; Lei, Elissa P.
Año de publicación
2018
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Increasing lines of evidence support that Argonaute2 (AGO2) harbors several nuclear functions in metazoa. In particular, Drosophila AGO2 modulates transcription of developmentally regulated genes; however, the molecular mechanisms behind AGO2 recruitment into chromatin and its function in transcription have not been deeply explored. In this study, we show that Drosophila AGO2 chromatin association depends on active transcription. In order to gain insight into how AGO2 controls transcription, we performed differential ChIP-seq analysis for RNA Polymerase II (Pol II) upon depletion of AGO2. Remarkably, we find specific accumulation of the elongating but not initiating form of Pol II after AGO2 knockdown, suggesting that AGO2 impairs transcription elongation. Finally, AGO2 also affects Negative Elongation Factor (NELF) chromatin association but not the Cyclin Dependent Kinase 9 (CDK9). Altogether, these results provide key insights into the molecular role of AGO2 in attenuating elongation of certain actively transcribed genes.
Fil: Nazer, Ezequiel. Nuclear Organization And Gene Expression Section; Estados Unidos. National Institutes of Health; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina
Fil: Dale, Ryan K.. National Institutes of Health; Estados Unidos
Fil: Palmer, Cameron. National Institutes of Health; Estados Unidos
Fil: Lei, Elissa P.. National Institutes of Health; Estados Unidos. Nuclear Organization And Gene Expression Section; Estados Unidos
Materia
Argonaute2
Transcription regulation
Chromatin
RNA PoL II
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/88525

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spelling Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogasterNazer, EzequielDale, Ryan K.Palmer, CameronLei, Elissa P.Argonaute2Transcription regulationChromatinRNA PoL IIhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Increasing lines of evidence support that Argonaute2 (AGO2) harbors several nuclear functions in metazoa. In particular, Drosophila AGO2 modulates transcription of developmentally regulated genes; however, the molecular mechanisms behind AGO2 recruitment into chromatin and its function in transcription have not been deeply explored. In this study, we show that Drosophila AGO2 chromatin association depends on active transcription. In order to gain insight into how AGO2 controls transcription, we performed differential ChIP-seq analysis for RNA Polymerase II (Pol II) upon depletion of AGO2. Remarkably, we find specific accumulation of the elongating but not initiating form of Pol II after AGO2 knockdown, suggesting that AGO2 impairs transcription elongation. Finally, AGO2 also affects Negative Elongation Factor (NELF) chromatin association but not the Cyclin Dependent Kinase 9 (CDK9). Altogether, these results provide key insights into the molecular role of AGO2 in attenuating elongation of certain actively transcribed genes.Fil: Nazer, Ezequiel. Nuclear Organization And Gene Expression Section; Estados Unidos. National Institutes of Health; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; ArgentinaFil: Dale, Ryan K.. National Institutes of Health; Estados UnidosFil: Palmer, Cameron. National Institutes of Health; Estados UnidosFil: Lei, Elissa P.. National Institutes of Health; Estados Unidos. Nuclear Organization And Gene Expression Section; Estados UnidosNature2018-12info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/88525Nazer, Ezequiel; Dale, Ryan K.; Palmer, Cameron; Lei, Elissa P.; Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster; Nature; Scientific Reports; 8; 1; 12-2018; 1-102045-2322CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1038/s41598-018-34115-1info:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41598-018-34115-1info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T14:23:12Zoai:ri.conicet.gov.ar:11336/88525instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 14:23:12.878CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster
title Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster
spellingShingle Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster
Nazer, Ezequiel
Argonaute2
Transcription regulation
Chromatin
RNA PoL II
title_short Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster
title_full Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster
title_fullStr Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster
title_full_unstemmed Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster
title_sort Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster
dc.creator.none.fl_str_mv Nazer, Ezequiel
Dale, Ryan K.
Palmer, Cameron
Lei, Elissa P.
author Nazer, Ezequiel
author_facet Nazer, Ezequiel
Dale, Ryan K.
Palmer, Cameron
Lei, Elissa P.
author_role author
author2 Dale, Ryan K.
Palmer, Cameron
Lei, Elissa P.
author2_role author
author
author
dc.subject.none.fl_str_mv Argonaute2
Transcription regulation
Chromatin
RNA PoL II
topic Argonaute2
Transcription regulation
Chromatin
RNA PoL II
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Increasing lines of evidence support that Argonaute2 (AGO2) harbors several nuclear functions in metazoa. In particular, Drosophila AGO2 modulates transcription of developmentally regulated genes; however, the molecular mechanisms behind AGO2 recruitment into chromatin and its function in transcription have not been deeply explored. In this study, we show that Drosophila AGO2 chromatin association depends on active transcription. In order to gain insight into how AGO2 controls transcription, we performed differential ChIP-seq analysis for RNA Polymerase II (Pol II) upon depletion of AGO2. Remarkably, we find specific accumulation of the elongating but not initiating form of Pol II after AGO2 knockdown, suggesting that AGO2 impairs transcription elongation. Finally, AGO2 also affects Negative Elongation Factor (NELF) chromatin association but not the Cyclin Dependent Kinase 9 (CDK9). Altogether, these results provide key insights into the molecular role of AGO2 in attenuating elongation of certain actively transcribed genes.
Fil: Nazer, Ezequiel. Nuclear Organization And Gene Expression Section; Estados Unidos. National Institutes of Health; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Fisiología, Biología Molecular y Neurociencias. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Fisiología, Biología Molecular y Neurociencias; Argentina
Fil: Dale, Ryan K.. National Institutes of Health; Estados Unidos
Fil: Palmer, Cameron. National Institutes of Health; Estados Unidos
Fil: Lei, Elissa P.. National Institutes of Health; Estados Unidos. Nuclear Organization And Gene Expression Section; Estados Unidos
description Increasing lines of evidence support that Argonaute2 (AGO2) harbors several nuclear functions in metazoa. In particular, Drosophila AGO2 modulates transcription of developmentally regulated genes; however, the molecular mechanisms behind AGO2 recruitment into chromatin and its function in transcription have not been deeply explored. In this study, we show that Drosophila AGO2 chromatin association depends on active transcription. In order to gain insight into how AGO2 controls transcription, we performed differential ChIP-seq analysis for RNA Polymerase II (Pol II) upon depletion of AGO2. Remarkably, we find specific accumulation of the elongating but not initiating form of Pol II after AGO2 knockdown, suggesting that AGO2 impairs transcription elongation. Finally, AGO2 also affects Negative Elongation Factor (NELF) chromatin association but not the Cyclin Dependent Kinase 9 (CDK9). Altogether, these results provide key insights into the molecular role of AGO2 in attenuating elongation of certain actively transcribed genes.
publishDate 2018
dc.date.none.fl_str_mv 2018-12
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/88525
Nazer, Ezequiel; Dale, Ryan K.; Palmer, Cameron; Lei, Elissa P.; Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster; Nature; Scientific Reports; 8; 1; 12-2018; 1-10
2045-2322
CONICET Digital
CONICET
url http://hdl.handle.net/11336/88525
identifier_str_mv Nazer, Ezequiel; Dale, Ryan K.; Palmer, Cameron; Lei, Elissa P.; Argonaute2 attenuates active transcription by limiting RNA Polymerase II elongation in Drosophila melanogaster; Nature; Scientific Reports; 8; 1; 12-2018; 1-10
2045-2322
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1038/s41598-018-34115-1
info:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41598-018-34115-1
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Nature
publisher.none.fl_str_mv Nature
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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