First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis

Autores
Rossi, Sebastián Maximiliano; Ferri, Cristian Alberto; Zapata, Pedro Dario
Año de publicación
2023
Idioma
español castellano
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Ilex paraguariensis St. Hil. is a dioecious tree native to the subtropical forests of South America, whose leaves and small branches are processed to prepare the stimulating and popular infusion known as “mate”. On the basis of the exploration, from the transcriptomic, genomic and phylogenetic perspective of the xanthine biosynthetic pathway, it was possible to discover pseudogenes through comparative analysis with other plants of agronomic importance. The transcripts of I. paraguariensis were analyzed using the elite material developed by INTA EAA-Cerro Azul de Misiones as reference genome and the data provided from the transcriptome sequenced by Debat et. al in 2014. A phylogenetic examination of enzymes from a large family of SABATH genes that catalyze the methylation of oxygen atoms of a wide variety of carboxylic acids was performed. The most recently evolved genes of the SABATH family are those corresponding to the Xanthine Methyltransferases (XMT) and Caffeine Synthase (CS) pathways. Investigating the different types of methyltransferases that yerba mate presents in the metabolic process of caffeine conversion, several SABATH enzymes were categorized, of which three corresponded to pseudogenes within the caffeine synthase group.
Ilex paraguariensis St. Hil. is a dioecious tree native to the subtropical forests of South America, whose leaves and small branches are processed to prepare the stimulating and popular infusion known as “mate”. On the basis of the exploration, from the transcriptomic, genomic and phylogenetic perspective of the xanthine biosynthetic pathway, it was possible to discover pseudogenes through comparative analysis with other plants of agronomic importance. The transcripts of I. paraguariensis were analyzed using the elite material developed by INTA EAA-Cerro Azul de Misiones as reference genome and the data provided from the transcriptome sequenced by Debat et. al in 2014. A phylogenetic examination of enzymes from a large family of SABATH genes that catalyze the methylation of oxygen atoms of a wide variety of carboxylic acids was performed. The most recently evolved genes of the SABATH family are those corresponding to the Xanthine Methyltransferases (XMT) and Caffeine Synthase (CS) pathways. Investigating the different types of methyltransferases that yerba mate presents in the metabolic process of caffeine conversion, several SABA
Fil: Rossi, Sebastián Maximiliano. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina. Universidad Nacional de Misiones. Facultad de Ciencias Exactas Químicas y Naturales. Departamento de Bioquímica Clínica. Laboratorio de Biotecnología Molecular; Argentina
Fil: Ferri, Cristian Alberto. Universidad Nacional de Misiones. Facultad de Ciencias Exactas Químicas y Naturales. Departamento de Bioquímica Clínica. Laboratorio de Biotecnología Molecular; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina
Fil: Zapata, Pedro Dario. Universidad Nacional de Misiones. Facultad de Ciencias Exactas Químicas y Naturales. Departamento de Bioquímica Clínica. Laboratorio de Biotecnología Molecular; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina
Materia
ENZIMES
YERBA MATE
SABATH
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/224710
Acceder
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spelling First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensisPrimer reporte de pseudogenes de enzimas SABATH de la vía metabólica de las xantinas en Ilex paraguariensisRossi, Sebastián MaximilianoFerri, Cristian AlbertoZapata, Pedro DarioENZIMESYERBA MATESABATHhttps://purl.org/becyt/ford/4.4https://purl.org/becyt/ford/4Ilex paraguariensis St. Hil. is a dioecious tree native to the subtropical forests of South America, whose leaves and small branches are processed to prepare the stimulating and popular infusion known as “mate”. On the basis of the exploration, from the transcriptomic, genomic and phylogenetic perspective of the xanthine biosynthetic pathway, it was possible to discover pseudogenes through comparative analysis with other plants of agronomic importance. The transcripts of I. paraguariensis were analyzed using the elite material developed by INTA EAA-Cerro Azul de Misiones as reference genome and the data provided from the transcriptome sequenced by Debat et. al in 2014. A phylogenetic examination of enzymes from a large family of SABATH genes that catalyze the methylation of oxygen atoms of a wide variety of carboxylic acids was performed. The most recently evolved genes of the SABATH family are those corresponding to the Xanthine Methyltransferases (XMT) and Caffeine Synthase (CS) pathways. Investigating the different types of methyltransferases that yerba mate presents in the metabolic process of caffeine conversion, several SABATH enzymes were categorized, of which three corresponded to pseudogenes within the caffeine synthase group.Ilex paraguariensis St. Hil. is a dioecious tree native to the subtropical forests of South America, whose leaves and small branches are processed to prepare the stimulating and popular infusion known as “mate”. On the basis of the exploration, from the transcriptomic, genomic and phylogenetic perspective of the xanthine biosynthetic pathway, it was possible to discover pseudogenes through comparative analysis with other plants of agronomic importance. The transcripts of I. paraguariensis were analyzed using the elite material developed by INTA EAA-Cerro Azul de Misiones as reference genome and the data provided from the transcriptome sequenced by Debat et. al in 2014. A phylogenetic examination of enzymes from a large family of SABATH genes that catalyze the methylation of oxygen atoms of a wide variety of carboxylic acids was performed. The most recently evolved genes of the SABATH family are those corresponding to the Xanthine Methyltransferases (XMT) and Caffeine Synthase (CS) pathways. Investigating the different types of methyltransferases that yerba mate presents in the metabolic process of caffeine conversion, several SABAFil: Rossi, Sebastián Maximiliano. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina. Universidad Nacional de Misiones. Facultad de Ciencias Exactas Químicas y Naturales. Departamento de Bioquímica Clínica. Laboratorio de Biotecnología Molecular; ArgentinaFil: Ferri, Cristian Alberto. Universidad Nacional de Misiones. Facultad de Ciencias Exactas Químicas y Naturales. Departamento de Bioquímica Clínica. Laboratorio de Biotecnología Molecular; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; ArgentinaFil: Zapata, Pedro Dario. Universidad Nacional de Misiones. Facultad de Ciencias Exactas Químicas y Naturales. Departamento de Bioquímica Clínica. Laboratorio de Biotecnología Molecular; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; ArgentinaUniversidad Nacional de Misiones. Facultad de Ciencias Exactas, Químicas y Naturales. Centro de Investigación y Desarrollo Tecnológico2023-12info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/224710Rossi, Sebastián Maximiliano; Ferri, Cristian Alberto; Zapata, Pedro Dario; First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis; Universidad Nacional de Misiones. Facultad de Ciencias Exactas, Químicas y Naturales. Centro de Investigación y Desarrollo Tecnológico; Revista de Ciencia y Tecnología; 40; 1; 12-2023; 14-240329-89221851-7587CONICET DigitalCONICETspainfo:eu-repo/semantics/altIdentifier/url/https://www.fceqyn.unam.edu.ar/recyt/index.php/recyt/article/view/764info:eu-repo/semantics/altIdentifier/doi/10.36995/j.recyt.2023.40.002info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-22T11:03:35Zoai:ri.conicet.gov.ar:11336/224710instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-22 11:03:35.619CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis
Primer reporte de pseudogenes de enzimas SABATH de la vía metabólica de las xantinas en Ilex paraguariensis
title First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis
spellingShingle First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis
Rossi, Sebastián Maximiliano
ENZIMES
YERBA MATE
SABATH
title_short First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis
title_full First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis
title_fullStr First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis
title_full_unstemmed First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis
title_sort First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis
dc.creator.none.fl_str_mv Rossi, Sebastián Maximiliano
Ferri, Cristian Alberto
Zapata, Pedro Dario
author Rossi, Sebastián Maximiliano
author_facet Rossi, Sebastián Maximiliano
Ferri, Cristian Alberto
Zapata, Pedro Dario
author_role author
author2 Ferri, Cristian Alberto
Zapata, Pedro Dario
author2_role author
author
dc.subject.none.fl_str_mv ENZIMES
YERBA MATE
SABATH
topic ENZIMES
YERBA MATE
SABATH
purl_subject.fl_str_mv https://purl.org/becyt/ford/4.4
https://purl.org/becyt/ford/4
dc.description.none.fl_txt_mv Ilex paraguariensis St. Hil. is a dioecious tree native to the subtropical forests of South America, whose leaves and small branches are processed to prepare the stimulating and popular infusion known as “mate”. On the basis of the exploration, from the transcriptomic, genomic and phylogenetic perspective of the xanthine biosynthetic pathway, it was possible to discover pseudogenes through comparative analysis with other plants of agronomic importance. The transcripts of I. paraguariensis were analyzed using the elite material developed by INTA EAA-Cerro Azul de Misiones as reference genome and the data provided from the transcriptome sequenced by Debat et. al in 2014. A phylogenetic examination of enzymes from a large family of SABATH genes that catalyze the methylation of oxygen atoms of a wide variety of carboxylic acids was performed. The most recently evolved genes of the SABATH family are those corresponding to the Xanthine Methyltransferases (XMT) and Caffeine Synthase (CS) pathways. Investigating the different types of methyltransferases that yerba mate presents in the metabolic process of caffeine conversion, several SABATH enzymes were categorized, of which three corresponded to pseudogenes within the caffeine synthase group.
Ilex paraguariensis St. Hil. is a dioecious tree native to the subtropical forests of South America, whose leaves and small branches are processed to prepare the stimulating and popular infusion known as “mate”. On the basis of the exploration, from the transcriptomic, genomic and phylogenetic perspective of the xanthine biosynthetic pathway, it was possible to discover pseudogenes through comparative analysis with other plants of agronomic importance. The transcripts of I. paraguariensis were analyzed using the elite material developed by INTA EAA-Cerro Azul de Misiones as reference genome and the data provided from the transcriptome sequenced by Debat et. al in 2014. A phylogenetic examination of enzymes from a large family of SABATH genes that catalyze the methylation of oxygen atoms of a wide variety of carboxylic acids was performed. The most recently evolved genes of the SABATH family are those corresponding to the Xanthine Methyltransferases (XMT) and Caffeine Synthase (CS) pathways. Investigating the different types of methyltransferases that yerba mate presents in the metabolic process of caffeine conversion, several SABA
Fil: Rossi, Sebastián Maximiliano. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina. Universidad Nacional de Misiones. Facultad de Ciencias Exactas Químicas y Naturales. Departamento de Bioquímica Clínica. Laboratorio de Biotecnología Molecular; Argentina
Fil: Ferri, Cristian Alberto. Universidad Nacional de Misiones. Facultad de Ciencias Exactas Químicas y Naturales. Departamento de Bioquímica Clínica. Laboratorio de Biotecnología Molecular; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina
Fil: Zapata, Pedro Dario. Universidad Nacional de Misiones. Facultad de Ciencias Exactas Químicas y Naturales. Departamento de Bioquímica Clínica. Laboratorio de Biotecnología Molecular; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina
description Ilex paraguariensis St. Hil. is a dioecious tree native to the subtropical forests of South America, whose leaves and small branches are processed to prepare the stimulating and popular infusion known as “mate”. On the basis of the exploration, from the transcriptomic, genomic and phylogenetic perspective of the xanthine biosynthetic pathway, it was possible to discover pseudogenes through comparative analysis with other plants of agronomic importance. The transcripts of I. paraguariensis were analyzed using the elite material developed by INTA EAA-Cerro Azul de Misiones as reference genome and the data provided from the transcriptome sequenced by Debat et. al in 2014. A phylogenetic examination of enzymes from a large family of SABATH genes that catalyze the methylation of oxygen atoms of a wide variety of carboxylic acids was performed. The most recently evolved genes of the SABATH family are those corresponding to the Xanthine Methyltransferases (XMT) and Caffeine Synthase (CS) pathways. Investigating the different types of methyltransferases that yerba mate presents in the metabolic process of caffeine conversion, several SABATH enzymes were categorized, of which three corresponded to pseudogenes within the caffeine synthase group.
publishDate 2023
dc.date.none.fl_str_mv 2023-12
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info:eu-repo/semantics/publishedVersion
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info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/224710
Rossi, Sebastián Maximiliano; Ferri, Cristian Alberto; Zapata, Pedro Dario; First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis; Universidad Nacional de Misiones. Facultad de Ciencias Exactas, Químicas y Naturales. Centro de Investigación y Desarrollo Tecnológico; Revista de Ciencia y Tecnología; 40; 1; 12-2023; 14-24
0329-8922
1851-7587
CONICET Digital
CONICET
url http://hdl.handle.net/11336/224710
identifier_str_mv Rossi, Sebastián Maximiliano; Ferri, Cristian Alberto; Zapata, Pedro Dario; First report of pseudogenes of SABATH enzymes from xanthinesmetabolic pathway in Ilex paraguariensis; Universidad Nacional de Misiones. Facultad de Ciencias Exactas, Químicas y Naturales. Centro de Investigación y Desarrollo Tecnológico; Revista de Ciencia y Tecnología; 40; 1; 12-2023; 14-24
0329-8922
1851-7587
CONICET Digital
CONICET
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language spa
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rights_invalid_str_mv https://creativecommons.org/licenses/by-nc/2.5/ar/
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dc.publisher.none.fl_str_mv Universidad Nacional de Misiones. Facultad de Ciencias Exactas, Químicas y Naturales. Centro de Investigación y Desarrollo Tecnológico
publisher.none.fl_str_mv Universidad Nacional de Misiones. Facultad de Ciencias Exactas, Químicas y Naturales. Centro de Investigación y Desarrollo Tecnológico
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
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repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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