Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species

Autores
Amavet, Patricia Susana; Rueda, Eva Carolina; Siroski, Pablo Ariel; Larriera, Alejandro; Saidman, Beatriz Ofelia
Año de publicación
2015
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Wild populations of Caiman latirostris are subject to sustainable use programs in Argentina, becoming a species with important impact in the regional economy, based in their skin and meat. Genetic studies are fundamental to acquire information on important parameters for conservation and management, which may be obtained from analysis of molecular markers. Some microsatellites have been previously isolated in this species, but due to some difficulties in using them, we obtained new ones using NGS approach. This study reports eight new microsatellites for C. latirostris and tests their utility in a related species, Caiman yacare, with successful application in population genetics and mating systems studies. In addition, we shared data about a novel and fast bioinformatics tool to find microsatellites and to design their corresponding primers.
Fil: Amavet, Patricia Susana. Universidad Nacional del Litoral. Facultad de Humanidades y Ciencias. Departamento de Ciencias Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; Argentina
Fil: Rueda, Eva Carolina. Universidad Nacional del Litoral. Facultad de Humanidades y Ciencias. Departamento de Ciencias Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; Argentina
Fil: Siroski, Pablo Ariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Santa Fe. Instituto de Ciencias Veterinarias del Litoral; Argentina
Fil: Larriera, Alejandro. Universidad Nacional del Litoral. Facultad de Humanidades y Ciencias. Departamento de Ciencias Naturales; Argentina
Fil: Saidman, Beatriz Ofelia. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; Argentina
Materia
Ssrs
Crocodilians
Conservation Genetics
Sustainable Use
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/19412
Acceder
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network_name_str CONICET Digital (CONICET)
spelling Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related speciesAmavet, Patricia SusanaRueda, Eva CarolinaSiroski, Pablo ArielLarriera, AlejandroSaidman, Beatriz OfeliaSsrsCrocodiliansConservation GeneticsSustainable Usehttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Wild populations of Caiman latirostris are subject to sustainable use programs in Argentina, becoming a species with important impact in the regional economy, based in their skin and meat. Genetic studies are fundamental to acquire information on important parameters for conservation and management, which may be obtained from analysis of molecular markers. Some microsatellites have been previously isolated in this species, but due to some difficulties in using them, we obtained new ones using NGS approach. This study reports eight new microsatellites for C. latirostris and tests their utility in a related species, Caiman yacare, with successful application in population genetics and mating systems studies. In addition, we shared data about a novel and fast bioinformatics tool to find microsatellites and to design their corresponding primers.Fil: Amavet, Patricia Susana. Universidad Nacional del Litoral. Facultad de Humanidades y Ciencias. Departamento de Ciencias Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; ArgentinaFil: Rueda, Eva Carolina. Universidad Nacional del Litoral. Facultad de Humanidades y Ciencias. Departamento de Ciencias Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; ArgentinaFil: Siroski, Pablo Ariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Santa Fe. Instituto de Ciencias Veterinarias del Litoral; ArgentinaFil: Larriera, Alejandro. Universidad Nacional del Litoral. Facultad de Humanidades y Ciencias. Departamento de Ciencias Naturales; ArgentinaFil: Saidman, Beatriz Ofelia. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; ArgentinaBrill Academic Publishers2015-04info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/19412Amavet, Patricia Susana; Rueda, Eva Carolina; Siroski, Pablo Ariel; Larriera, Alejandro; Saidman, Beatriz Ofelia; Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species; Brill Academic Publishers; Amphibia-reptilia; 36; 2; 4-2015; 175-1800173-53730173-5373CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1163/15685381-00002987info:eu-repo/semantics/altIdentifier/url/http://booksandjournals.brillonline.com/content/journals/10.1163/15685381-00002987info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2026-03-11T12:58:26Zoai:ri.conicet.gov.ar:11336/19412instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982026-03-11 12:58:27.175CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species
title Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species
spellingShingle Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species
Amavet, Patricia Susana
Ssrs
Crocodilians
Conservation Genetics
Sustainable Use
title_short Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species
title_full Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species
title_fullStr Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species
title_full_unstemmed Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species
title_sort Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species
dc.creator.none.fl_str_mv Amavet, Patricia Susana
Rueda, Eva Carolina
Siroski, Pablo Ariel
Larriera, Alejandro
Saidman, Beatriz Ofelia
author Amavet, Patricia Susana
author_facet Amavet, Patricia Susana
Rueda, Eva Carolina
Siroski, Pablo Ariel
Larriera, Alejandro
Saidman, Beatriz Ofelia
author_role author
author2 Rueda, Eva Carolina
Siroski, Pablo Ariel
Larriera, Alejandro
Saidman, Beatriz Ofelia
author2_role author
author
author
author
dc.subject.none.fl_str_mv Ssrs
Crocodilians
Conservation Genetics
Sustainable Use
topic Ssrs
Crocodilians
Conservation Genetics
Sustainable Use
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Wild populations of Caiman latirostris are subject to sustainable use programs in Argentina, becoming a species with important impact in the regional economy, based in their skin and meat. Genetic studies are fundamental to acquire information on important parameters for conservation and management, which may be obtained from analysis of molecular markers. Some microsatellites have been previously isolated in this species, but due to some difficulties in using them, we obtained new ones using NGS approach. This study reports eight new microsatellites for C. latirostris and tests their utility in a related species, Caiman yacare, with successful application in population genetics and mating systems studies. In addition, we shared data about a novel and fast bioinformatics tool to find microsatellites and to design their corresponding primers.
Fil: Amavet, Patricia Susana. Universidad Nacional del Litoral. Facultad de Humanidades y Ciencias. Departamento de Ciencias Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; Argentina
Fil: Rueda, Eva Carolina. Universidad Nacional del Litoral. Facultad de Humanidades y Ciencias. Departamento de Ciencias Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; Argentina
Fil: Siroski, Pablo Ariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Santa Fe. Instituto de Ciencias Veterinarias del Litoral; Argentina
Fil: Larriera, Alejandro. Universidad Nacional del Litoral. Facultad de Humanidades y Ciencias. Departamento de Ciencias Naturales; Argentina
Fil: Saidman, Beatriz Ofelia. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe; Argentina
description Wild populations of Caiman latirostris are subject to sustainable use programs in Argentina, becoming a species with important impact in the regional economy, based in their skin and meat. Genetic studies are fundamental to acquire information on important parameters for conservation and management, which may be obtained from analysis of molecular markers. Some microsatellites have been previously isolated in this species, but due to some difficulties in using them, we obtained new ones using NGS approach. This study reports eight new microsatellites for C. latirostris and tests their utility in a related species, Caiman yacare, with successful application in population genetics and mating systems studies. In addition, we shared data about a novel and fast bioinformatics tool to find microsatellites and to design their corresponding primers.
publishDate 2015
dc.date.none.fl_str_mv 2015-04
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/19412
Amavet, Patricia Susana; Rueda, Eva Carolina; Siroski, Pablo Ariel; Larriera, Alejandro; Saidman, Beatriz Ofelia; Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species; Brill Academic Publishers; Amphibia-reptilia; 36; 2; 4-2015; 175-180
0173-5373
0173-5373
CONICET Digital
CONICET
url http://hdl.handle.net/11336/19412
identifier_str_mv Amavet, Patricia Susana; Rueda, Eva Carolina; Siroski, Pablo Ariel; Larriera, Alejandro; Saidman, Beatriz Ofelia; Isolation and characterization of new microsatellite markers for application in population genetic studies of Caiman latirostris and related species; Brill Academic Publishers; Amphibia-reptilia; 36; 2; 4-2015; 175-180
0173-5373
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1163/15685381-00002987
info:eu-repo/semantics/altIdentifier/url/http://booksandjournals.brillonline.com/content/journals/10.1163/15685381-00002987
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Brill Academic Publishers
publisher.none.fl_str_mv Brill Academic Publishers
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 12.977003

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