Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake
- Autores
- Gorriti, Marta Fabiana; Dias, Graciela M.; Chimetto, Luciane A.; Trindade-Silva, Amaro E.; Silva, Bruno S.; Mesquita, Milene M.A.; Gregoracci, Gustavo B.; Farias, Maria Eugenia; Thompson, Cristiane C.; Thompson, Fabiano L.
- Año de publicación
- 2014
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Background: Salinivibrios are moderately halophilic bacteria found in salted meats, brines and hypersaline environments. We obtained three novel conspecific Salinivibrio strains closely related to S. costicola, from Socompa Lake, a high altitude hypersaline Andean lake (approx. 3,570 meters above the sea level).Results: The three novel Salinivibrio spp. were extremely resistant to arsenic (up to 200 mM HAsO42-), NaCl (up to 15%), and UV-B radiation (19 KJ/m2, corresponding to 240 minutes of exposure) by means of phenotypic tests. Our subsequent draft genome ionsequencing and RAST-based genome annotation revealed the presence of genes related to arsenic, NaCl, and UV radiation resistance. The three novel Salinivibrio genomes also had the xanthorhodopsin gene cluster phylogenetically related to Marinobacter and Spiribacter. The genomic taxonomy analysis, including multilocus sequence analysis, average amino acid identity, and genome-to-genome distance revealed that the three novel strains belong to a new Salinivibrio species.Conclusions: Arsenic resistance genes, genes involved in DNA repair, resistance to extreme environmental conditions and the possible light-based energy production, may represent important attributes of the novel salinivibrios, allowing these microbes to thrive in the Socompa Lake. © 2014 Gorriti et al.; licensee BioMed Central Ltd.
Fil: Gorriti, Marta Fabiana. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina
Fil: Dias, Graciela M.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Chimetto, Luciane A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Trindade-Silva, Amaro E.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Silva, Bruno S.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Mesquita, Milene M.A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Gregoracci, Gustavo B.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina
Fil: Thompson, Cristiane C.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Thompson, Fabiano L.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil - Materia
-
ARSENIC
EXTREME ENVIRONMENT
SALINITY
UV RADIATION
XANTHORHODOPSIN - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/36562
Ver los metadatos del registro completo
id |
CONICETDig_7590f27f2df34aa7c9625fdda17aef74 |
---|---|
oai_identifier_str |
oai:ri.conicet.gov.ar:11336/36562 |
network_acronym_str |
CONICETDig |
repository_id_str |
3498 |
network_name_str |
CONICET Digital (CONICET) |
spelling |
Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lakeGorriti, Marta FabianaDias, Graciela M.Chimetto, Luciane A.Trindade-Silva, Amaro E.Silva, Bruno S.Mesquita, Milene M.A.Gregoracci, Gustavo B.Farias, Maria EugeniaThompson, Cristiane C.Thompson, Fabiano L.ARSENICEXTREME ENVIRONMENTSALINITYUV RADIATIONXANTHORHODOPSINhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Background: Salinivibrios are moderately halophilic bacteria found in salted meats, brines and hypersaline environments. We obtained three novel conspecific Salinivibrio strains closely related to S. costicola, from Socompa Lake, a high altitude hypersaline Andean lake (approx. 3,570 meters above the sea level).Results: The three novel Salinivibrio spp. were extremely resistant to arsenic (up to 200 mM HAsO42-), NaCl (up to 15%), and UV-B radiation (19 KJ/m2, corresponding to 240 minutes of exposure) by means of phenotypic tests. Our subsequent draft genome ionsequencing and RAST-based genome annotation revealed the presence of genes related to arsenic, NaCl, and UV radiation resistance. The three novel Salinivibrio genomes also had the xanthorhodopsin gene cluster phylogenetically related to Marinobacter and Spiribacter. The genomic taxonomy analysis, including multilocus sequence analysis, average amino acid identity, and genome-to-genome distance revealed that the three novel strains belong to a new Salinivibrio species.Conclusions: Arsenic resistance genes, genes involved in DNA repair, resistance to extreme environmental conditions and the possible light-based energy production, may represent important attributes of the novel salinivibrios, allowing these microbes to thrive in the Socompa Lake. © 2014 Gorriti et al.; licensee BioMed Central Ltd.Fil: Gorriti, Marta Fabiana. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; ArgentinaFil: Dias, Graciela M.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Chimetto, Luciane A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Trindade-Silva, Amaro E.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Silva, Bruno S.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Mesquita, Milene M.A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Gregoracci, Gustavo B.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; ArgentinaFil: Thompson, Cristiane C.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Thompson, Fabiano L.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilBioMed Central2014-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/36562Gorriti, Marta Fabiana; Dias, Graciela M.; Chimetto, Luciane A.; Trindade-Silva, Amaro E.; Silva, Bruno S.; et al.; Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake; BioMed Central; BMC Genomics; 15; 1; 6-20141471-2164CONICET DigitalCONICETenginfo:eu-repo/semantics/reference/url/http://www.biomedcentral.com/1471-2164/15/473info:eu-repo/semantics/altIdentifier/url/http://www.biomedcentral.com/1471-2164/15/473info:eu-repo/semantics/altIdentifier/doi/10.1186/1471-2164-15-473info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:47:27Zoai:ri.conicet.gov.ar:11336/36562instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:47:27.336CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake |
title |
Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake |
spellingShingle |
Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake Gorriti, Marta Fabiana ARSENIC EXTREME ENVIRONMENT SALINITY UV RADIATION XANTHORHODOPSIN |
title_short |
Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake |
title_full |
Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake |
title_fullStr |
Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake |
title_full_unstemmed |
Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake |
title_sort |
Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake |
dc.creator.none.fl_str_mv |
Gorriti, Marta Fabiana Dias, Graciela M. Chimetto, Luciane A. Trindade-Silva, Amaro E. Silva, Bruno S. Mesquita, Milene M.A. Gregoracci, Gustavo B. Farias, Maria Eugenia Thompson, Cristiane C. Thompson, Fabiano L. |
author |
Gorriti, Marta Fabiana |
author_facet |
Gorriti, Marta Fabiana Dias, Graciela M. Chimetto, Luciane A. Trindade-Silva, Amaro E. Silva, Bruno S. Mesquita, Milene M.A. Gregoracci, Gustavo B. Farias, Maria Eugenia Thompson, Cristiane C. Thompson, Fabiano L. |
author_role |
author |
author2 |
Dias, Graciela M. Chimetto, Luciane A. Trindade-Silva, Amaro E. Silva, Bruno S. Mesquita, Milene M.A. Gregoracci, Gustavo B. Farias, Maria Eugenia Thompson, Cristiane C. Thompson, Fabiano L. |
author2_role |
author author author author author author author author author |
dc.subject.none.fl_str_mv |
ARSENIC EXTREME ENVIRONMENT SALINITY UV RADIATION XANTHORHODOPSIN |
topic |
ARSENIC EXTREME ENVIRONMENT SALINITY UV RADIATION XANTHORHODOPSIN |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Background: Salinivibrios are moderately halophilic bacteria found in salted meats, brines and hypersaline environments. We obtained three novel conspecific Salinivibrio strains closely related to S. costicola, from Socompa Lake, a high altitude hypersaline Andean lake (approx. 3,570 meters above the sea level).Results: The three novel Salinivibrio spp. were extremely resistant to arsenic (up to 200 mM HAsO42-), NaCl (up to 15%), and UV-B radiation (19 KJ/m2, corresponding to 240 minutes of exposure) by means of phenotypic tests. Our subsequent draft genome ionsequencing and RAST-based genome annotation revealed the presence of genes related to arsenic, NaCl, and UV radiation resistance. The three novel Salinivibrio genomes also had the xanthorhodopsin gene cluster phylogenetically related to Marinobacter and Spiribacter. The genomic taxonomy analysis, including multilocus sequence analysis, average amino acid identity, and genome-to-genome distance revealed that the three novel strains belong to a new Salinivibrio species.Conclusions: Arsenic resistance genes, genes involved in DNA repair, resistance to extreme environmental conditions and the possible light-based energy production, may represent important attributes of the novel salinivibrios, allowing these microbes to thrive in the Socompa Lake. © 2014 Gorriti et al.; licensee BioMed Central Ltd. Fil: Gorriti, Marta Fabiana. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina Fil: Dias, Graciela M.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil Fil: Chimetto, Luciane A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil Fil: Trindade-Silva, Amaro E.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil Fil: Silva, Bruno S.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil Fil: Mesquita, Milene M.A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil Fil: Gregoracci, Gustavo B.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil Fil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina Fil: Thompson, Cristiane C.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil Fil: Thompson, Fabiano L.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil |
description |
Background: Salinivibrios are moderately halophilic bacteria found in salted meats, brines and hypersaline environments. We obtained three novel conspecific Salinivibrio strains closely related to S. costicola, from Socompa Lake, a high altitude hypersaline Andean lake (approx. 3,570 meters above the sea level).Results: The three novel Salinivibrio spp. were extremely resistant to arsenic (up to 200 mM HAsO42-), NaCl (up to 15%), and UV-B radiation (19 KJ/m2, corresponding to 240 minutes of exposure) by means of phenotypic tests. Our subsequent draft genome ionsequencing and RAST-based genome annotation revealed the presence of genes related to arsenic, NaCl, and UV radiation resistance. The three novel Salinivibrio genomes also had the xanthorhodopsin gene cluster phylogenetically related to Marinobacter and Spiribacter. The genomic taxonomy analysis, including multilocus sequence analysis, average amino acid identity, and genome-to-genome distance revealed that the three novel strains belong to a new Salinivibrio species.Conclusions: Arsenic resistance genes, genes involved in DNA repair, resistance to extreme environmental conditions and the possible light-based energy production, may represent important attributes of the novel salinivibrios, allowing these microbes to thrive in the Socompa Lake. © 2014 Gorriti et al.; licensee BioMed Central Ltd. |
publishDate |
2014 |
dc.date.none.fl_str_mv |
2014-06 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/36562 Gorriti, Marta Fabiana; Dias, Graciela M.; Chimetto, Luciane A.; Trindade-Silva, Amaro E.; Silva, Bruno S.; et al.; Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake; BioMed Central; BMC Genomics; 15; 1; 6-2014 1471-2164 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/36562 |
identifier_str_mv |
Gorriti, Marta Fabiana; Dias, Graciela M.; Chimetto, Luciane A.; Trindade-Silva, Amaro E.; Silva, Bruno S.; et al.; Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake; BioMed Central; BMC Genomics; 15; 1; 6-2014 1471-2164 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/reference/url/http://www.biomedcentral.com/1471-2164/15/473 info:eu-repo/semantics/altIdentifier/url/http://www.biomedcentral.com/1471-2164/15/473 info:eu-repo/semantics/altIdentifier/doi/10.1186/1471-2164-15-473 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
BioMed Central |
publisher.none.fl_str_mv |
BioMed Central |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
_version_ |
1844613478270107648 |
score |
13.070432 |