Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake

Autores
Gorriti, Marta Fabiana; Dias, Graciela M.; Chimetto, Luciane A.; Trindade-Silva, Amaro E.; Silva, Bruno S.; Mesquita, Milene M.A.; Gregoracci, Gustavo B.; Farias, Maria Eugenia; Thompson, Cristiane C.; Thompson, Fabiano L.
Año de publicación
2014
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Background: Salinivibrios are moderately halophilic bacteria found in salted meats, brines and hypersaline environments. We obtained three novel conspecific Salinivibrio strains closely related to S. costicola, from Socompa Lake, a high altitude hypersaline Andean lake (approx. 3,570 meters above the sea level).Results: The three novel Salinivibrio spp. were extremely resistant to arsenic (up to 200 mM HAsO42-), NaCl (up to 15%), and UV-B radiation (19 KJ/m2, corresponding to 240 minutes of exposure) by means of phenotypic tests. Our subsequent draft genome ionsequencing and RAST-based genome annotation revealed the presence of genes related to arsenic, NaCl, and UV radiation resistance. The three novel Salinivibrio genomes also had the xanthorhodopsin gene cluster phylogenetically related to Marinobacter and Spiribacter. The genomic taxonomy analysis, including multilocus sequence analysis, average amino acid identity, and genome-to-genome distance revealed that the three novel strains belong to a new Salinivibrio species.Conclusions: Arsenic resistance genes, genes involved in DNA repair, resistance to extreme environmental conditions and the possible light-based energy production, may represent important attributes of the novel salinivibrios, allowing these microbes to thrive in the Socompa Lake. © 2014 Gorriti et al.; licensee BioMed Central Ltd.
Fil: Gorriti, Marta Fabiana. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina
Fil: Dias, Graciela M.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Chimetto, Luciane A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Trindade-Silva, Amaro E.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Silva, Bruno S.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Mesquita, Milene M.A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Gregoracci, Gustavo B.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina
Fil: Thompson, Cristiane C.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Thompson, Fabiano L.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Materia
ARSENIC
EXTREME ENVIRONMENT
SALINITY
UV RADIATION
XANTHORHODOPSIN
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/36562

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network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lakeGorriti, Marta FabianaDias, Graciela M.Chimetto, Luciane A.Trindade-Silva, Amaro E.Silva, Bruno S.Mesquita, Milene M.A.Gregoracci, Gustavo B.Farias, Maria EugeniaThompson, Cristiane C.Thompson, Fabiano L.ARSENICEXTREME ENVIRONMENTSALINITYUV RADIATIONXANTHORHODOPSINhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Background: Salinivibrios are moderately halophilic bacteria found in salted meats, brines and hypersaline environments. We obtained three novel conspecific Salinivibrio strains closely related to S. costicola, from Socompa Lake, a high altitude hypersaline Andean lake (approx. 3,570 meters above the sea level).Results: The three novel Salinivibrio spp. were extremely resistant to arsenic (up to 200 mM HAsO42-), NaCl (up to 15%), and UV-B radiation (19 KJ/m2, corresponding to 240 minutes of exposure) by means of phenotypic tests. Our subsequent draft genome ionsequencing and RAST-based genome annotation revealed the presence of genes related to arsenic, NaCl, and UV radiation resistance. The three novel Salinivibrio genomes also had the xanthorhodopsin gene cluster phylogenetically related to Marinobacter and Spiribacter. The genomic taxonomy analysis, including multilocus sequence analysis, average amino acid identity, and genome-to-genome distance revealed that the three novel strains belong to a new Salinivibrio species.Conclusions: Arsenic resistance genes, genes involved in DNA repair, resistance to extreme environmental conditions and the possible light-based energy production, may represent important attributes of the novel salinivibrios, allowing these microbes to thrive in the Socompa Lake. © 2014 Gorriti et al.; licensee BioMed Central Ltd.Fil: Gorriti, Marta Fabiana. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; ArgentinaFil: Dias, Graciela M.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Chimetto, Luciane A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Trindade-Silva, Amaro E.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Silva, Bruno S.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Mesquita, Milene M.A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Gregoracci, Gustavo B.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; ArgentinaFil: Thompson, Cristiane C.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilFil: Thompson, Fabiano L.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; BrasilBioMed Central2014-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/36562Gorriti, Marta Fabiana; Dias, Graciela M.; Chimetto, Luciane A.; Trindade-Silva, Amaro E.; Silva, Bruno S.; et al.; Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake; BioMed Central; BMC Genomics; 15; 1; 6-20141471-2164CONICET DigitalCONICETenginfo:eu-repo/semantics/reference/url/http://www.biomedcentral.com/1471-2164/15/473info:eu-repo/semantics/altIdentifier/url/http://www.biomedcentral.com/1471-2164/15/473info:eu-repo/semantics/altIdentifier/doi/10.1186/1471-2164-15-473info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:47:27Zoai:ri.conicet.gov.ar:11336/36562instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:47:27.336CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake
title Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake
spellingShingle Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake
Gorriti, Marta Fabiana
ARSENIC
EXTREME ENVIRONMENT
SALINITY
UV RADIATION
XANTHORHODOPSIN
title_short Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake
title_full Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake
title_fullStr Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake
title_full_unstemmed Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake
title_sort Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake
dc.creator.none.fl_str_mv Gorriti, Marta Fabiana
Dias, Graciela M.
Chimetto, Luciane A.
Trindade-Silva, Amaro E.
Silva, Bruno S.
Mesquita, Milene M.A.
Gregoracci, Gustavo B.
Farias, Maria Eugenia
Thompson, Cristiane C.
Thompson, Fabiano L.
author Gorriti, Marta Fabiana
author_facet Gorriti, Marta Fabiana
Dias, Graciela M.
Chimetto, Luciane A.
Trindade-Silva, Amaro E.
Silva, Bruno S.
Mesquita, Milene M.A.
Gregoracci, Gustavo B.
Farias, Maria Eugenia
Thompson, Cristiane C.
Thompson, Fabiano L.
author_role author
author2 Dias, Graciela M.
Chimetto, Luciane A.
Trindade-Silva, Amaro E.
Silva, Bruno S.
Mesquita, Milene M.A.
Gregoracci, Gustavo B.
Farias, Maria Eugenia
Thompson, Cristiane C.
Thompson, Fabiano L.
author2_role author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv ARSENIC
EXTREME ENVIRONMENT
SALINITY
UV RADIATION
XANTHORHODOPSIN
topic ARSENIC
EXTREME ENVIRONMENT
SALINITY
UV RADIATION
XANTHORHODOPSIN
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Background: Salinivibrios are moderately halophilic bacteria found in salted meats, brines and hypersaline environments. We obtained three novel conspecific Salinivibrio strains closely related to S. costicola, from Socompa Lake, a high altitude hypersaline Andean lake (approx. 3,570 meters above the sea level).Results: The three novel Salinivibrio spp. were extremely resistant to arsenic (up to 200 mM HAsO42-), NaCl (up to 15%), and UV-B radiation (19 KJ/m2, corresponding to 240 minutes of exposure) by means of phenotypic tests. Our subsequent draft genome ionsequencing and RAST-based genome annotation revealed the presence of genes related to arsenic, NaCl, and UV radiation resistance. The three novel Salinivibrio genomes also had the xanthorhodopsin gene cluster phylogenetically related to Marinobacter and Spiribacter. The genomic taxonomy analysis, including multilocus sequence analysis, average amino acid identity, and genome-to-genome distance revealed that the three novel strains belong to a new Salinivibrio species.Conclusions: Arsenic resistance genes, genes involved in DNA repair, resistance to extreme environmental conditions and the possible light-based energy production, may represent important attributes of the novel salinivibrios, allowing these microbes to thrive in the Socompa Lake. © 2014 Gorriti et al.; licensee BioMed Central Ltd.
Fil: Gorriti, Marta Fabiana. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina
Fil: Dias, Graciela M.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Chimetto, Luciane A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Trindade-Silva, Amaro E.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Silva, Bruno S.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Mesquita, Milene M.A.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Gregoracci, Gustavo B.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucuman. Planta Piloto de Procesos Industriales Microbiologicos; Argentina
Fil: Thompson, Cristiane C.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
Fil: Thompson, Fabiano L.. Laboratório de Microbiologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil ; Brasil
description Background: Salinivibrios are moderately halophilic bacteria found in salted meats, brines and hypersaline environments. We obtained three novel conspecific Salinivibrio strains closely related to S. costicola, from Socompa Lake, a high altitude hypersaline Andean lake (approx. 3,570 meters above the sea level).Results: The three novel Salinivibrio spp. were extremely resistant to arsenic (up to 200 mM HAsO42-), NaCl (up to 15%), and UV-B radiation (19 KJ/m2, corresponding to 240 minutes of exposure) by means of phenotypic tests. Our subsequent draft genome ionsequencing and RAST-based genome annotation revealed the presence of genes related to arsenic, NaCl, and UV radiation resistance. The three novel Salinivibrio genomes also had the xanthorhodopsin gene cluster phylogenetically related to Marinobacter and Spiribacter. The genomic taxonomy analysis, including multilocus sequence analysis, average amino acid identity, and genome-to-genome distance revealed that the three novel strains belong to a new Salinivibrio species.Conclusions: Arsenic resistance genes, genes involved in DNA repair, resistance to extreme environmental conditions and the possible light-based energy production, may represent important attributes of the novel salinivibrios, allowing these microbes to thrive in the Socompa Lake. © 2014 Gorriti et al.; licensee BioMed Central Ltd.
publishDate 2014
dc.date.none.fl_str_mv 2014-06
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/36562
Gorriti, Marta Fabiana; Dias, Graciela M.; Chimetto, Luciane A.; Trindade-Silva, Amaro E.; Silva, Bruno S.; et al.; Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake; BioMed Central; BMC Genomics; 15; 1; 6-2014
1471-2164
CONICET Digital
CONICET
url http://hdl.handle.net/11336/36562
identifier_str_mv Gorriti, Marta Fabiana; Dias, Graciela M.; Chimetto, Luciane A.; Trindade-Silva, Amaro E.; Silva, Bruno S.; et al.; Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake; BioMed Central; BMC Genomics; 15; 1; 6-2014
1471-2164
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/reference/url/http://www.biomedcentral.com/1471-2164/15/473
info:eu-repo/semantics/altIdentifier/url/http://www.biomedcentral.com/1471-2164/15/473
info:eu-repo/semantics/altIdentifier/doi/10.1186/1471-2164-15-473
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv BioMed Central
publisher.none.fl_str_mv BioMed Central
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reponame_str CONICET Digital (CONICET)
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instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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