Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model

Autores
Goloboff, Pablo Augusto; Pittman, Michael; Pol, Diego; Xu, Xing
Año de publicación
2018
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The Mkv evolutionary model, based on minor modifications to models of molecular evolution, is being increasingly used to infer phylogenies from discrete morphological data, often producing different results from parsimony. The critical difference between Mkv and parsimony is the assumption of a "common mechanism" in the Mkv model, with branch lengths determining that probability of change for all characters increases or decreases at the same tree branches by the sameexponential factor. Weevaluate whether the a ssumption of acommonmechani smapplies tomorphology, bytesting the implicit prediction that branch lengths calculated from different subsets of characters will be significantly correlated. Our analysis shows that DNA (38 data sets tested) is often compatible with a common mechanism, but morphology (86 data sets tested) generally is not, showing very disparate branch lengths for different character partitions. The low levels of branch length correlation demonstrated for morphology (fitting models without a common mechanism) suggest that the Mkv model is too unrealistic and inadequate for the analysis of most morphological data sets.
Fil: Goloboff, Pablo Augusto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico - Tucumán. Unidad Ejecutora Lillo; Argentina
Fil: Pittman, Michael. University of Hong Kong; Hong Kong
Fil: Pol, Diego. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte; Argentina
Fil: Xu, Xing. Chinese Academy of Sciences; República de China
Materia
BAYESIAN ANALYSIS
MKV MODEL
MORPHOLOGICAL DATA
PHYLOGENETICS
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/124661
Acceder
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network_acronym_str CONICETDig
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network_name_str CONICET Digital (CONICET)
spelling Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv modelGoloboff, Pablo AugustoPittman, MichaelPol, DiegoXu, XingBAYESIAN ANALYSISMKV MODELMORPHOLOGICAL DATAPHYLOGENETICShttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The Mkv evolutionary model, based on minor modifications to models of molecular evolution, is being increasingly used to infer phylogenies from discrete morphological data, often producing different results from parsimony. The critical difference between Mkv and parsimony is the assumption of a "common mechanism" in the Mkv model, with branch lengths determining that probability of change for all characters increases or decreases at the same tree branches by the sameexponential factor. Weevaluate whether the a ssumption of acommonmechani smapplies tomorphology, bytesting the implicit prediction that branch lengths calculated from different subsets of characters will be significantly correlated. Our analysis shows that DNA (38 data sets tested) is often compatible with a common mechanism, but morphology (86 data sets tested) generally is not, showing very disparate branch lengths for different character partitions. The low levels of branch length correlation demonstrated for morphology (fitting models without a common mechanism) suggest that the Mkv model is too unrealistic and inadequate for the analysis of most morphological data sets.Fil: Goloboff, Pablo Augusto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico - Tucumán. Unidad Ejecutora Lillo; ArgentinaFil: Pittman, Michael. University of Hong Kong; Hong KongFil: Pol, Diego. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte; ArgentinaFil: Xu, Xing. Chinese Academy of Sciences; República de ChinaOxford University Press2018-11-15info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/124661Goloboff, Pablo Augusto; Pittman, Michael; Pol, Diego; Xu, Xing; Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model; Oxford University Press; Systematic Biology; 68; 3; 15-11-2018; 494-5041063-51571076-836XCONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1093/sysbio/syy077info:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/sysbio/article-abstract/68/3/494/5184275info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:38:32Zoai:ri.conicet.gov.ar:11336/124661instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:38:32.553CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model
title Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model
spellingShingle Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model
Goloboff, Pablo Augusto
BAYESIAN ANALYSIS
MKV MODEL
MORPHOLOGICAL DATA
PHYLOGENETICS
title_short Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model
title_full Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model
title_fullStr Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model
title_full_unstemmed Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model
title_sort Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model
dc.creator.none.fl_str_mv Goloboff, Pablo Augusto
Pittman, Michael
Pol, Diego
Xu, Xing
author Goloboff, Pablo Augusto
author_facet Goloboff, Pablo Augusto
Pittman, Michael
Pol, Diego
Xu, Xing
author_role author
author2 Pittman, Michael
Pol, Diego
Xu, Xing
author2_role author
author
author
dc.subject.none.fl_str_mv BAYESIAN ANALYSIS
MKV MODEL
MORPHOLOGICAL DATA
PHYLOGENETICS
topic BAYESIAN ANALYSIS
MKV MODEL
MORPHOLOGICAL DATA
PHYLOGENETICS
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The Mkv evolutionary model, based on minor modifications to models of molecular evolution, is being increasingly used to infer phylogenies from discrete morphological data, often producing different results from parsimony. The critical difference between Mkv and parsimony is the assumption of a "common mechanism" in the Mkv model, with branch lengths determining that probability of change for all characters increases or decreases at the same tree branches by the sameexponential factor. Weevaluate whether the a ssumption of acommonmechani smapplies tomorphology, bytesting the implicit prediction that branch lengths calculated from different subsets of characters will be significantly correlated. Our analysis shows that DNA (38 data sets tested) is often compatible with a common mechanism, but morphology (86 data sets tested) generally is not, showing very disparate branch lengths for different character partitions. The low levels of branch length correlation demonstrated for morphology (fitting models without a common mechanism) suggest that the Mkv model is too unrealistic and inadequate for the analysis of most morphological data sets.
Fil: Goloboff, Pablo Augusto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico - Tucumán. Unidad Ejecutora Lillo; Argentina
Fil: Pittman, Michael. University of Hong Kong; Hong Kong
Fil: Pol, Diego. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte; Argentina
Fil: Xu, Xing. Chinese Academy of Sciences; República de China
description The Mkv evolutionary model, based on minor modifications to models of molecular evolution, is being increasingly used to infer phylogenies from discrete morphological data, often producing different results from parsimony. The critical difference between Mkv and parsimony is the assumption of a "common mechanism" in the Mkv model, with branch lengths determining that probability of change for all characters increases or decreases at the same tree branches by the sameexponential factor. Weevaluate whether the a ssumption of acommonmechani smapplies tomorphology, bytesting the implicit prediction that branch lengths calculated from different subsets of characters will be significantly correlated. Our analysis shows that DNA (38 data sets tested) is often compatible with a common mechanism, but morphology (86 data sets tested) generally is not, showing very disparate branch lengths for different character partitions. The low levels of branch length correlation demonstrated for morphology (fitting models without a common mechanism) suggest that the Mkv model is too unrealistic and inadequate for the analysis of most morphological data sets.
publishDate 2018
dc.date.none.fl_str_mv 2018-11-15
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/124661
Goloboff, Pablo Augusto; Pittman, Michael; Pol, Diego; Xu, Xing; Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model; Oxford University Press; Systematic Biology; 68; 3; 15-11-2018; 494-504
1063-5157
1076-836X
CONICET Digital
CONICET
url http://hdl.handle.net/11336/124661
identifier_str_mv Goloboff, Pablo Augusto; Pittman, Michael; Pol, Diego; Xu, Xing; Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model; Oxford University Press; Systematic Biology; 68; 3; 15-11-2018; 494-504
1063-5157
1076-836X
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1093/sysbio/syy077
info:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/sysbio/article-abstract/68/3/494/5184275
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.070432

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