Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function
- Autores
- Preger Ben Noon, Ella; Sabarís Di Lorenzo, Gonzalo Julián; Ortiz, Daniela M.; Sager, Jonathan; Liebowitz, Anna; Stern, David L.; Frankel, Nicolás
- Año de publicación
- 2018
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Developmental genes can have complex cis-regulatory regions with multiple enhancers. Early work revealed remarkable modularity of enhancers, whereby distinct DNA regions drive gene expression in defined spatiotemporal domains. Nevertheless, a few reports have shown that enhancers function in multiple developmental stages, implying that enhancers can be pleiotropic. Here, we have studied the activity of the enhancers of the shavenbaby gene throughout D. melanogaster development. We found that all seven shavenbaby enhancers drive expression in multiple tissues and developmental stages. We explored how enhancer pleiotropy is encoded in two of these enhancers. In one enhancer, the same transcription factor binding sites contribute to embryonic and pupal expression, revealing site pleiotropy, whereas for a second enhancer, these roles are encoded by distinct sites. Enhancer pleiotropy may be a common feature of cis-regulatory regions of developmental genes, and site pleiotropy may constrain enhancer evolution in some cases. Preger-Ben Noon et al. find that shavenbaby gene enhancers contain regulatory information for driving several expression patterns (i.e., enhancers are pleiotropic) and that, in some cases, the transcription factor binding sites that activate these enhancers are reused during development.
Fil: Preger Ben Noon, Ella. Howard Hughes Medical Institute; Estados Unidos
Fil: Sabarís Di Lorenzo, Gonzalo Julián. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; Argentina
Fil: Ortiz, Daniela M.. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; Argentina
Fil: Sager, Jonathan. Howard Hughes Medical Institute; Estados Unidos
Fil: Liebowitz, Anna. University of Princeton; Estados Unidos
Fil: Stern, David L.. Howard Hughes Medical Institute; Estados Unidos
Fil: Frankel, Nicolás. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; Argentina - Materia
-
DROSOPHILA
ENHANCER
GENE REGULATION
PLEITROPY
SHAVENBABY - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/96571
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Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer FunctionPreger Ben Noon, EllaSabarís Di Lorenzo, Gonzalo JuliánOrtiz, Daniela M.Sager, JonathanLiebowitz, AnnaStern, David L.Frankel, NicolásDROSOPHILAENHANCERGENE REGULATIONPLEITROPYSHAVENBABYhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Developmental genes can have complex cis-regulatory regions with multiple enhancers. Early work revealed remarkable modularity of enhancers, whereby distinct DNA regions drive gene expression in defined spatiotemporal domains. Nevertheless, a few reports have shown that enhancers function in multiple developmental stages, implying that enhancers can be pleiotropic. Here, we have studied the activity of the enhancers of the shavenbaby gene throughout D. melanogaster development. We found that all seven shavenbaby enhancers drive expression in multiple tissues and developmental stages. We explored how enhancer pleiotropy is encoded in two of these enhancers. In one enhancer, the same transcription factor binding sites contribute to embryonic and pupal expression, revealing site pleiotropy, whereas for a second enhancer, these roles are encoded by distinct sites. Enhancer pleiotropy may be a common feature of cis-regulatory regions of developmental genes, and site pleiotropy may constrain enhancer evolution in some cases. Preger-Ben Noon et al. find that shavenbaby gene enhancers contain regulatory information for driving several expression patterns (i.e., enhancers are pleiotropic) and that, in some cases, the transcription factor binding sites that activate these enhancers are reused during development.Fil: Preger Ben Noon, Ella. Howard Hughes Medical Institute; Estados UnidosFil: Sabarís Di Lorenzo, Gonzalo Julián. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; ArgentinaFil: Ortiz, Daniela M.. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; ArgentinaFil: Sager, Jonathan. Howard Hughes Medical Institute; Estados UnidosFil: Liebowitz, Anna. University of Princeton; Estados UnidosFil: Stern, David L.. Howard Hughes Medical Institute; Estados UnidosFil: Frankel, Nicolás. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; ArgentinaElsevier2018-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/96571Preger Ben Noon, Ella; Sabarís Di Lorenzo, Gonzalo Julián; Ortiz, Daniela M.; Sager, Jonathan; Liebowitz, Anna; et al.; Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function; Elsevier; Cell Reports; 22; 11; 3-2018; 3021-30312211-1247CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://www.sciencedirect.com/science/article/pii/S2211124718302687info:eu-repo/semantics/altIdentifier/doi/10.1016/j.celrep.2018.02.073info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-nd/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T10:47:38Zoai:ri.conicet.gov.ar:11336/96571instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 10:47:38.924CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function |
title |
Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function |
spellingShingle |
Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function Preger Ben Noon, Ella DROSOPHILA ENHANCER GENE REGULATION PLEITROPY SHAVENBABY |
title_short |
Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function |
title_full |
Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function |
title_fullStr |
Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function |
title_full_unstemmed |
Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function |
title_sort |
Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function |
dc.creator.none.fl_str_mv |
Preger Ben Noon, Ella Sabarís Di Lorenzo, Gonzalo Julián Ortiz, Daniela M. Sager, Jonathan Liebowitz, Anna Stern, David L. Frankel, Nicolás |
author |
Preger Ben Noon, Ella |
author_facet |
Preger Ben Noon, Ella Sabarís Di Lorenzo, Gonzalo Julián Ortiz, Daniela M. Sager, Jonathan Liebowitz, Anna Stern, David L. Frankel, Nicolás |
author_role |
author |
author2 |
Sabarís Di Lorenzo, Gonzalo Julián Ortiz, Daniela M. Sager, Jonathan Liebowitz, Anna Stern, David L. Frankel, Nicolás |
author2_role |
author author author author author author |
dc.subject.none.fl_str_mv |
DROSOPHILA ENHANCER GENE REGULATION PLEITROPY SHAVENBABY |
topic |
DROSOPHILA ENHANCER GENE REGULATION PLEITROPY SHAVENBABY |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Developmental genes can have complex cis-regulatory regions with multiple enhancers. Early work revealed remarkable modularity of enhancers, whereby distinct DNA regions drive gene expression in defined spatiotemporal domains. Nevertheless, a few reports have shown that enhancers function in multiple developmental stages, implying that enhancers can be pleiotropic. Here, we have studied the activity of the enhancers of the shavenbaby gene throughout D. melanogaster development. We found that all seven shavenbaby enhancers drive expression in multiple tissues and developmental stages. We explored how enhancer pleiotropy is encoded in two of these enhancers. In one enhancer, the same transcription factor binding sites contribute to embryonic and pupal expression, revealing site pleiotropy, whereas for a second enhancer, these roles are encoded by distinct sites. Enhancer pleiotropy may be a common feature of cis-regulatory regions of developmental genes, and site pleiotropy may constrain enhancer evolution in some cases. Preger-Ben Noon et al. find that shavenbaby gene enhancers contain regulatory information for driving several expression patterns (i.e., enhancers are pleiotropic) and that, in some cases, the transcription factor binding sites that activate these enhancers are reused during development. Fil: Preger Ben Noon, Ella. Howard Hughes Medical Institute; Estados Unidos Fil: Sabarís Di Lorenzo, Gonzalo Julián. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; Argentina Fil: Ortiz, Daniela M.. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; Argentina Fil: Sager, Jonathan. Howard Hughes Medical Institute; Estados Unidos Fil: Liebowitz, Anna. University of Princeton; Estados Unidos Fil: Stern, David L.. Howard Hughes Medical Institute; Estados Unidos Fil: Frankel, Nicolás. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; Argentina |
description |
Developmental genes can have complex cis-regulatory regions with multiple enhancers. Early work revealed remarkable modularity of enhancers, whereby distinct DNA regions drive gene expression in defined spatiotemporal domains. Nevertheless, a few reports have shown that enhancers function in multiple developmental stages, implying that enhancers can be pleiotropic. Here, we have studied the activity of the enhancers of the shavenbaby gene throughout D. melanogaster development. We found that all seven shavenbaby enhancers drive expression in multiple tissues and developmental stages. We explored how enhancer pleiotropy is encoded in two of these enhancers. In one enhancer, the same transcription factor binding sites contribute to embryonic and pupal expression, revealing site pleiotropy, whereas for a second enhancer, these roles are encoded by distinct sites. Enhancer pleiotropy may be a common feature of cis-regulatory regions of developmental genes, and site pleiotropy may constrain enhancer evolution in some cases. Preger-Ben Noon et al. find that shavenbaby gene enhancers contain regulatory information for driving several expression patterns (i.e., enhancers are pleiotropic) and that, in some cases, the transcription factor binding sites that activate these enhancers are reused during development. |
publishDate |
2018 |
dc.date.none.fl_str_mv |
2018-03 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/96571 Preger Ben Noon, Ella; Sabarís Di Lorenzo, Gonzalo Julián; Ortiz, Daniela M.; Sager, Jonathan; Liebowitz, Anna; et al.; Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function; Elsevier; Cell Reports; 22; 11; 3-2018; 3021-3031 2211-1247 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/96571 |
identifier_str_mv |
Preger Ben Noon, Ella; Sabarís Di Lorenzo, Gonzalo Julián; Ortiz, Daniela M.; Sager, Jonathan; Liebowitz, Anna; et al.; Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function; Elsevier; Cell Reports; 22; 11; 3-2018; 3021-3031 2211-1247 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/https://www.sciencedirect.com/science/article/pii/S2211124718302687 info:eu-repo/semantics/altIdentifier/doi/10.1016/j.celrep.2018.02.073 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-nd/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Elsevier |
publisher.none.fl_str_mv |
Elsevier |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
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CONICET Digital (CONICET) |
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Consejo Nacional de Investigaciones Científicas y Técnicas |
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CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
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dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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13.070432 |