Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers

Autores
Grzebelus, Dariusz; Iorizzo, Massimo; Senalik, Douglas; Ellison, Shelby; Cavagnaro, Pablo Federico; Macko Podgorni, Alicja; Heller Uszynska, Kasia; Kilian, Andrzej; Nothnagel, Thomas; Allender, Charlotte; Simon, Philipp W.; Baranski, Rafal
Año de publicación
2014
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Carrot is one of the most economically important vegetables worldwide, but genetic and genomic resources supporting carrot breeding remain limited. We developed a Diversity Arrays Technology (DArT) platform for wild and cultivated carrot and used it to investigate genetic diversity and to develop a saturated genetic linkage map of carrot. We analyzed a set of 900 DArT markers in a collection of plant materials comprising 94 cultivated and 65 wild carrot accessions. The accessions were attributed to three separate groups: wild, Eastern cultivated and Western cultivated. Twenty-seven markers showing signatures for selection were identified. They showed a directional shift in frequency from the wild to the cultivated, likely reflecting diversifying selection imposed in the course of domestication. A genetic linkage map constructed using 188 F2 plants comprised 431 markers with an average distance of 1.1 cM, divided into nine linkage groups. Using previously anchored single nucleotide polymorphisms, the linkage groups were physically attributed to the nine carrot chromosomes. A cluster of markers mapping to chromosome 8 showed significant segregation distortion. Two of the 27 DArT markers with signatures for selection were segregating in the mapping population and were localized on chromosomes 2 and 6. Chromosome 2 was previously shown to carry the Vrn1 gene governing the biennial growth habit essential for cultivated carrot. The results reported here provide background for further research on the history of carrot domestication and identify genomic regions potentially important for modern carrot breeding.
Fil: Grzebelus, Dariusz. Agricultural University of Kraków; Polonia
Fil: Iorizzo, Massimo. University of Wisconsin; Estados Unidos
Fil: Senalik, Douglas. University of Wisconsin; Estados Unidos
Fil: Ellison, Shelby. University of Wisconsin; Estados Unidos
Fil: Cavagnaro, Pablo Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza-San Juan. Estación Experimental Agropecuaria La Consulta; Argentina
Fil: Macko Podgorni, Alicja. Agricultural University of Kraków; Polonia
Fil: Heller Uszynska, Kasia. Diversity Arrays Technology; Australia
Fil: Kilian, Andrzej. Diversity Arrays Technology; Australia
Fil: Nothnagel, Thomas. Federal Research Center For Cultivated Plants; Alemania
Fil: Allender, Charlotte. University of Warwick; Reino Unido
Fil: Simon, Philipp W.. University of Wisconsin; Estados Unidos
Fil: Baranski, Rafal. Agricultural University of Kraków; Polonia
Materia
CARROT
DART
DIVERSITY STRUCTURE
DOMESTICATION
LINKAGE MAPPING
SELECTION
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/100326
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/100326
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markersGrzebelus, DariuszIorizzo, MassimoSenalik, DouglasEllison, ShelbyCavagnaro, Pablo FedericoMacko Podgorni, AlicjaHeller Uszynska, KasiaKilian, AndrzejNothnagel, ThomasAllender, CharlotteSimon, Philipp W.Baranski, RafalCARROTDARTDIVERSITY STRUCTUREDOMESTICATIONLINKAGE MAPPINGSELECTIONhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Carrot is one of the most economically important vegetables worldwide, but genetic and genomic resources supporting carrot breeding remain limited. We developed a Diversity Arrays Technology (DArT) platform for wild and cultivated carrot and used it to investigate genetic diversity and to develop a saturated genetic linkage map of carrot. We analyzed a set of 900 DArT markers in a collection of plant materials comprising 94 cultivated and 65 wild carrot accessions. The accessions were attributed to three separate groups: wild, Eastern cultivated and Western cultivated. Twenty-seven markers showing signatures for selection were identified. They showed a directional shift in frequency from the wild to the cultivated, likely reflecting diversifying selection imposed in the course of domestication. A genetic linkage map constructed using 188 F2 plants comprised 431 markers with an average distance of 1.1 cM, divided into nine linkage groups. Using previously anchored single nucleotide polymorphisms, the linkage groups were physically attributed to the nine carrot chromosomes. A cluster of markers mapping to chromosome 8 showed significant segregation distortion. Two of the 27 DArT markers with signatures for selection were segregating in the mapping population and were localized on chromosomes 2 and 6. Chromosome 2 was previously shown to carry the Vrn1 gene governing the biennial growth habit essential for cultivated carrot. The results reported here provide background for further research on the history of carrot domestication and identify genomic regions potentially important for modern carrot breeding.Fil: Grzebelus, Dariusz. Agricultural University of Kraków; PoloniaFil: Iorizzo, Massimo. University of Wisconsin; Estados UnidosFil: Senalik, Douglas. University of Wisconsin; Estados UnidosFil: Ellison, Shelby. University of Wisconsin; Estados UnidosFil: Cavagnaro, Pablo Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza-San Juan. Estación Experimental Agropecuaria La Consulta; ArgentinaFil: Macko Podgorni, Alicja. Agricultural University of Kraków; PoloniaFil: Heller Uszynska, Kasia. Diversity Arrays Technology; AustraliaFil: Kilian, Andrzej. Diversity Arrays Technology; AustraliaFil: Nothnagel, Thomas. Federal Research Center For Cultivated Plants; AlemaniaFil: Allender, Charlotte. University of Warwick; Reino UnidoFil: Simon, Philipp W.. University of Wisconsin; Estados UnidosFil: Baranski, Rafal. Agricultural University of Kraków; PoloniaSpringer2014-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/100326Grzebelus, Dariusz; Iorizzo, Massimo; Senalik, Douglas; Ellison, Shelby; Cavagnaro, Pablo Federico; et al.; Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers; Springer; Molecular Breeding; 33; 3; 3-2014; 625-6371380-3743CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007/s11032-013-9979-9info:eu-repo/semantics/altIdentifier/doi/10.1007/s11032-013-9979-9info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-10T13:03:45Zoai:ri.conicet.gov.ar:11336/100326instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-10 13:03:45.427CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers
title Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers
spellingShingle Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers
Grzebelus, Dariusz
CARROT
DART
DIVERSITY STRUCTURE
DOMESTICATION
LINKAGE MAPPING
SELECTION
title_short Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers
title_full Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers
title_fullStr Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers
title_full_unstemmed Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers
title_sort Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers
dc.creator.none.fl_str_mv Grzebelus, Dariusz
Iorizzo, Massimo
Senalik, Douglas
Ellison, Shelby
Cavagnaro, Pablo Federico
Macko Podgorni, Alicja
Heller Uszynska, Kasia
Kilian, Andrzej
Nothnagel, Thomas
Allender, Charlotte
Simon, Philipp W.
Baranski, Rafal
author Grzebelus, Dariusz
author_facet Grzebelus, Dariusz
Iorizzo, Massimo
Senalik, Douglas
Ellison, Shelby
Cavagnaro, Pablo Federico
Macko Podgorni, Alicja
Heller Uszynska, Kasia
Kilian, Andrzej
Nothnagel, Thomas
Allender, Charlotte
Simon, Philipp W.
Baranski, Rafal
author_role author
author2 Iorizzo, Massimo
Senalik, Douglas
Ellison, Shelby
Cavagnaro, Pablo Federico
Macko Podgorni, Alicja
Heller Uszynska, Kasia
Kilian, Andrzej
Nothnagel, Thomas
Allender, Charlotte
Simon, Philipp W.
Baranski, Rafal
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv CARROT
DART
DIVERSITY STRUCTURE
DOMESTICATION
LINKAGE MAPPING
SELECTION
topic CARROT
DART
DIVERSITY STRUCTURE
DOMESTICATION
LINKAGE MAPPING
SELECTION
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Carrot is one of the most economically important vegetables worldwide, but genetic and genomic resources supporting carrot breeding remain limited. We developed a Diversity Arrays Technology (DArT) platform for wild and cultivated carrot and used it to investigate genetic diversity and to develop a saturated genetic linkage map of carrot. We analyzed a set of 900 DArT markers in a collection of plant materials comprising 94 cultivated and 65 wild carrot accessions. The accessions were attributed to three separate groups: wild, Eastern cultivated and Western cultivated. Twenty-seven markers showing signatures for selection were identified. They showed a directional shift in frequency from the wild to the cultivated, likely reflecting diversifying selection imposed in the course of domestication. A genetic linkage map constructed using 188 F2 plants comprised 431 markers with an average distance of 1.1 cM, divided into nine linkage groups. Using previously anchored single nucleotide polymorphisms, the linkage groups were physically attributed to the nine carrot chromosomes. A cluster of markers mapping to chromosome 8 showed significant segregation distortion. Two of the 27 DArT markers with signatures for selection were segregating in the mapping population and were localized on chromosomes 2 and 6. Chromosome 2 was previously shown to carry the Vrn1 gene governing the biennial growth habit essential for cultivated carrot. The results reported here provide background for further research on the history of carrot domestication and identify genomic regions potentially important for modern carrot breeding.
Fil: Grzebelus, Dariusz. Agricultural University of Kraków; Polonia
Fil: Iorizzo, Massimo. University of Wisconsin; Estados Unidos
Fil: Senalik, Douglas. University of Wisconsin; Estados Unidos
Fil: Ellison, Shelby. University of Wisconsin; Estados Unidos
Fil: Cavagnaro, Pablo Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Mendoza-San Juan. Estación Experimental Agropecuaria La Consulta; Argentina
Fil: Macko Podgorni, Alicja. Agricultural University of Kraków; Polonia
Fil: Heller Uszynska, Kasia. Diversity Arrays Technology; Australia
Fil: Kilian, Andrzej. Diversity Arrays Technology; Australia
Fil: Nothnagel, Thomas. Federal Research Center For Cultivated Plants; Alemania
Fil: Allender, Charlotte. University of Warwick; Reino Unido
Fil: Simon, Philipp W.. University of Wisconsin; Estados Unidos
Fil: Baranski, Rafal. Agricultural University of Kraków; Polonia
description Carrot is one of the most economically important vegetables worldwide, but genetic and genomic resources supporting carrot breeding remain limited. We developed a Diversity Arrays Technology (DArT) platform for wild and cultivated carrot and used it to investigate genetic diversity and to develop a saturated genetic linkage map of carrot. We analyzed a set of 900 DArT markers in a collection of plant materials comprising 94 cultivated and 65 wild carrot accessions. The accessions were attributed to three separate groups: wild, Eastern cultivated and Western cultivated. Twenty-seven markers showing signatures for selection were identified. They showed a directional shift in frequency from the wild to the cultivated, likely reflecting diversifying selection imposed in the course of domestication. A genetic linkage map constructed using 188 F2 plants comprised 431 markers with an average distance of 1.1 cM, divided into nine linkage groups. Using previously anchored single nucleotide polymorphisms, the linkage groups were physically attributed to the nine carrot chromosomes. A cluster of markers mapping to chromosome 8 showed significant segregation distortion. Two of the 27 DArT markers with signatures for selection were segregating in the mapping population and were localized on chromosomes 2 and 6. Chromosome 2 was previously shown to carry the Vrn1 gene governing the biennial growth habit essential for cultivated carrot. The results reported here provide background for further research on the history of carrot domestication and identify genomic regions potentially important for modern carrot breeding.
publishDate 2014
dc.date.none.fl_str_mv 2014-03
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/100326
Grzebelus, Dariusz; Iorizzo, Massimo; Senalik, Douglas; Ellison, Shelby; Cavagnaro, Pablo Federico; et al.; Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers; Springer; Molecular Breeding; 33; 3; 3-2014; 625-637
1380-3743
CONICET Digital
CONICET
url http://hdl.handle.net/11336/100326
identifier_str_mv Grzebelus, Dariusz; Iorizzo, Massimo; Senalik, Douglas; Ellison, Shelby; Cavagnaro, Pablo Federico; et al.; Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers; Springer; Molecular Breeding; 33; 3; 3-2014; 625-637
1380-3743
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007/s11032-013-9979-9
info:eu-repo/semantics/altIdentifier/doi/10.1007/s11032-013-9979-9
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 12.993085

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