Exome and Tissue-Associated Microbiota as Predictive Markers of Response to Neoadjuvant Treatment in Locally Advanced Rectal Cancer

• Autores: Takenaka, Isabella Kuniko T. M.; Bartelli, Thais F.; Defelicibus, Alexandre; Sendoya, Juan Martín; Golubicki, Mariano; Robbio, Juan; Serpa, Marianna S.; Branco, Gabriela P.; Santos, Luana B. C.; Claro, Laura C. L.; Oliveira dos Santos, Gabriel; Kupper, Bruna E. C.; da Silva, Israel T.; Llera, Andrea Sabina; de Mello, Celso A. L.; Riechelmann, Rachel P.; Dias Neto, Emmanuel; Iseas, Soledad; Aguiar, Samuel; Nunes, Diana Noronha
• Año de publicación: 2022
• Idioma: inglés
• Tipo de recurso: artículo
• Materia: BIOMARKERS OF TREATMENT RESPONSE; LOCALLY ADVANCED RECTAL CANCER; MICROBIOTA; MUTATIONAL SIGNATURES; NEOADJUVANT CHEMORADIOTHERAPY; WHOLE EXOME SEQUENCING
• Institución: Consejo Nacional de Investigaciones Científicas y Técnicas

The clinical and pathological responses to multimodal neoadjuvant therapy in locally advanced rectal cancers (LARCs) remain unpredictable, and robust biomarkers are still lacking. Recent studies have shown that tumors present somatic molecular alterations related to better treatment response, and it is also clear that tumor-associated bacteria are modulators of chemotherapy and immunotherapy efficacy, therefore having implications for long-term survivorship and a good potential as the biomarkers of outcome. Here, we performed whole exome sequencing and 16S ribosomal RNA (rRNA) amplicon sequencing from 44 pre-treatment LARC biopsies from Argentinian and Brazilian patients, treated with neoadjuvant chemoradiotherapy or total neoadjuvant treatment, searching for predictive biomarkers of response (responders, n = 17; non-responders, n = 27). In general, the somatic landscape of LARC was not capable to predict a response; however, a significant enrichment in mutational signature SBS5 was observed in non-responders (p = 0.0021), as well as the co-occurrence of APC and FAT4 mutations (p < 0.05). Microbiota studies revealed a similar alpha and beta diversity of bacteria between response groups. Yet, the linear discriminant analysis (LDA) of effect size indicated an enrichment of Hungatella, Flavonifractor, and Methanosphaera (LDA score ≥3) in the pre-treatment biopsies of responders, while non-responders had a higher abundance of Enhydrobacter, Paraprevotella (LDA score ≥3) and Finegoldia (LDA score ≥4). Altogether, the evaluation of these biomarkers in pre-treatment biopsies could eventually predict a neoadjuvant treatment response, while in post-treatment samples, it could help in guiding non-operative treatment strategies.
Fil: Takenaka, Isabella Kuniko T. M.. No especifíca;
Fil: Bartelli, Thais F.. No especifíca;
Fil: Defelicibus, Alexandre. No especifíca;
Fil: Sendoya, Juan Martín. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Bioquímicas de Buenos Aires. Fundación Instituto Leloir. Instituto de Investigaciones Bioquímicas de Buenos Aires; Argentina
Fil: Golubicki, Mariano. Gobierno de la Ciudad de Buenos Aires. Hospital de Gastroenterología "Dr. Carlos B. Udaondo"; Argentina
Fil: Robbio, Juan. No especifíca;
Fil: Serpa, Marianna S.. No especifíca;
Fil: Branco, Gabriela P.. No especifíca;
Fil: Santos, Luana B. C.. No especifíca;
Fil: Claro, Laura C. L.. No especifíca;
Fil: Oliveira dos Santos, Gabriel. No especifíca;
Fil: Kupper, Bruna E. C.. No especifíca;
Fil: da Silva, Israel T.. No especifíca;
Fil: Llera, Andrea Sabina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Bioquímicas de Buenos Aires. Fundación Instituto Leloir. Instituto de Investigaciones Bioquímicas de Buenos Aires; Argentina
Fil: de Mello, Celso A. L.. No especifíca;
Fil: Riechelmann, Rachel P.. No especifíca;
Fil: Dias Neto, Emmanuel. Universidade de Sao Paulo; Brasil
Fil: Iseas, Soledad. Gobierno de la Ciudad de Buenos Aires. Hospital de Gastroenterología "Dr. Carlos B. Udaondo"; Argentina
Fil: Aguiar, Samuel. No especifíca;
Fil: Nunes, Diana Noronha. No especifíca;