Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces
- Autores
- Peris, David; Ubbelohde, Emily J.; Kuang, Meihua Christina; Kominek, Jacek; Langdon, Quinn K.; Adams, María; Koshalek, Justin A.; Hulfachor, Amanda Beth; Opulente, Dana A.; Hall, David J.; Hyma, Katie; Fay, Justin C.; Leducq, Jean-Baptiste; Charron, Guillaume; Landry, Christian R.; Libkind Frati, Diego; Gonçalves, Carla; Gonçalves, Paula; Sampaio, José Paulo; Wang, Qi-Ming; Bai, Feng-Yan; Wrobel, Russel L.; Hittinger, Chris Todd
- Año de publicación
- 2023
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Species is the fundamental unit to quantify biodiversity. In recent years, the model yeast Saccharomyces cerevisiae has seen an increased number of studies related to its geographical distribution, population structure, and phenotypic diversity. However, seven additional species from the same genus have been less thoroughly studied, which has limited our understanding of the macroevolutionary events leading to the diversification of this genus over the last 20 million years. Here, we show the geographies, hosts, substrates, and phylogenetic relationships for approximately 1,800 Saccharomyces strains, covering the complete genus with unprecedented breadth and depth. We generated and analyzed complete genome sequences of 163 strains and phenotyped 128 phylogenetically diverse strains. This dataset provides insights about genetic and phenotypic diversity within and between species and populations, quantifies reticulation and incomplete lineage sorting, and demonstrates how gene flow and selection have affected traits, such as galactose metabolism. These findings elevate the genus Saccharomyces as a model to understand biodiversity and evolution in microbial eukaryotes.
Fil: Peris, David. Consejo Superior de Investigaciones Científicas. Instituto de Agroquímica y Tecnología de Alimentos; España. University of Oslo; Noruega. University of Wisconsin; Estados Unidos
Fil: Ubbelohde, Emily J.. University of Wisconsin; Estados Unidos
Fil: Kuang, Meihua Christina. University of Wisconsin; Estados Unidos
Fil: Kominek, Jacek. University of Wisconsin; Estados Unidos
Fil: Langdon, Quinn K.. University of Wisconsin; Estados Unidos
Fil: Adams, María. University of Wisconsin; Estados Unidos
Fil: Koshalek, Justin A.. University of Wisconsin; Estados Unidos
Fil: Hulfachor, Amanda Beth. University of Wisconsin; Estados Unidos
Fil: Opulente, Dana A.. University of Wisconsin; Estados Unidos
Fil: Hall, David J.. University of Utrecht; Países Bajos
Fil: Hyma, Katie. University of Rochester; Estados Unidos
Fil: Fay, Justin C.. University of Rochester; Estados Unidos
Fil: Leducq, Jean-Baptiste. Laval University; Canadá. University of Montreal; Canadá
Fil: Charron, Guillaume. Laurentian Forestry Centre; Canadá
Fil: Landry, Christian R.. Laval University; Canadá
Fil: Libkind Frati, Diego. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales. Universidad Nacional del Comahue. Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales; Argentina. Universidad Nacional del Comahue. Centro Regional Universitario Bariloche; Argentina
Fil: Gonçalves, Carla. Vanderbilt University; Estados Unidos. University of Wisconsin; Estados Unidos. Universidade Nova de Lisboa; Portugal
Fil: Gonçalves, Paula. Universidade Nova de Lisboa; Portugal
Fil: Sampaio, José Paulo. Universidade Nova de Lisboa; Portugal
Fil: Wang, Qi-Ming. University of Wisconsin; Estados Unidos. Hebei University; China
Fil: Bai, Feng-Yan. Chinese Academy of Sciences; República de China
Fil: Wrobel, Russel L.. University of Wisconsin; Estados Unidos
Fil: Hittinger, Chris Todd. University of Wisconsin; Estados Unidos - Materia
-
YEAST
GENOMIC
SACCHAROMYCES
DIVERSITY - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by/2.5/ar/
- Repositorio
.jpg)
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/241016
Ver los metadatos del registro completo
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Macroevolutionary diversity of traits and genomes in the model yeast genus SaccharomycesPeris, DavidUbbelohde, Emily J.Kuang, Meihua ChristinaKominek, JacekLangdon, Quinn K.Adams, MaríaKoshalek, Justin A.Hulfachor, Amanda BethOpulente, Dana A.Hall, David J.Hyma, KatieFay, Justin C.Leducq, Jean-BaptisteCharron, GuillaumeLandry, Christian R.Libkind Frati, DiegoGonçalves, CarlaGonçalves, PaulaSampaio, José PauloWang, Qi-MingBai, Feng-YanWrobel, Russel L.Hittinger, Chris ToddYEASTGENOMICSACCHAROMYCESDIVERSITYhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Species is the fundamental unit to quantify biodiversity. In recent years, the model yeast Saccharomyces cerevisiae has seen an increased number of studies related to its geographical distribution, population structure, and phenotypic diversity. However, seven additional species from the same genus have been less thoroughly studied, which has limited our understanding of the macroevolutionary events leading to the diversification of this genus over the last 20 million years. Here, we show the geographies, hosts, substrates, and phylogenetic relationships for approximately 1,800 Saccharomyces strains, covering the complete genus with unprecedented breadth and depth. We generated and analyzed complete genome sequences of 163 strains and phenotyped 128 phylogenetically diverse strains. This dataset provides insights about genetic and phenotypic diversity within and between species and populations, quantifies reticulation and incomplete lineage sorting, and demonstrates how gene flow and selection have affected traits, such as galactose metabolism. These findings elevate the genus Saccharomyces as a model to understand biodiversity and evolution in microbial eukaryotes.Fil: Peris, David. Consejo Superior de Investigaciones Científicas. Instituto de Agroquímica y Tecnología de Alimentos; España. University of Oslo; Noruega. University of Wisconsin; Estados UnidosFil: Ubbelohde, Emily J.. University of Wisconsin; Estados UnidosFil: Kuang, Meihua Christina. University of Wisconsin; Estados UnidosFil: Kominek, Jacek. University of Wisconsin; Estados UnidosFil: Langdon, Quinn K.. University of Wisconsin; Estados UnidosFil: Adams, María. University of Wisconsin; Estados UnidosFil: Koshalek, Justin A.. University of Wisconsin; Estados UnidosFil: Hulfachor, Amanda Beth. University of Wisconsin; Estados UnidosFil: Opulente, Dana A.. University of Wisconsin; Estados UnidosFil: Hall, David J.. University of Utrecht; Países BajosFil: Hyma, Katie. University of Rochester; Estados UnidosFil: Fay, Justin C.. University of Rochester; Estados UnidosFil: Leducq, Jean-Baptiste. Laval University; Canadá. University of Montreal; CanadáFil: Charron, Guillaume. Laurentian Forestry Centre; CanadáFil: Landry, Christian R.. Laval University; CanadáFil: Libkind Frati, Diego. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales. Universidad Nacional del Comahue. Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales; Argentina. Universidad Nacional del Comahue. Centro Regional Universitario Bariloche; ArgentinaFil: Gonçalves, Carla. Vanderbilt University; Estados Unidos. University of Wisconsin; Estados Unidos. Universidade Nova de Lisboa; PortugalFil: Gonçalves, Paula. Universidade Nova de Lisboa; PortugalFil: Sampaio, José Paulo. Universidade Nova de Lisboa; PortugalFil: Wang, Qi-Ming. University of Wisconsin; Estados Unidos. Hebei University; ChinaFil: Bai, Feng-Yan. Chinese Academy of Sciences; República de ChinaFil: Wrobel, Russel L.. University of Wisconsin; Estados UnidosFil: Hittinger, Chris Todd. University of Wisconsin; Estados UnidosSpringer2023-12info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/241016Peris, David; Ubbelohde, Emily J.; Kuang, Meihua Christina; Kominek, Jacek; Langdon, Quinn K.; et al.; Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces; Springer; Nature Communications; 14; 1; 12-2023; 1-192041-1723CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41467-023-36139-2info:eu-repo/semantics/altIdentifier/doi/10.1038/s41467-023-36139-2info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:59:30Zoai:ri.conicet.gov.ar:11336/241016instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:59:31.188CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
| dc.title.none.fl_str_mv |
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces |
| title |
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces |
| spellingShingle |
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces Peris, David YEAST GENOMIC SACCHAROMYCES DIVERSITY |
| title_short |
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces |
| title_full |
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces |
| title_fullStr |
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces |
| title_full_unstemmed |
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces |
| title_sort |
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces |
| dc.creator.none.fl_str_mv |
Peris, David Ubbelohde, Emily J. Kuang, Meihua Christina Kominek, Jacek Langdon, Quinn K. Adams, María Koshalek, Justin A. Hulfachor, Amanda Beth Opulente, Dana A. Hall, David J. Hyma, Katie Fay, Justin C. Leducq, Jean-Baptiste Charron, Guillaume Landry, Christian R. Libkind Frati, Diego Gonçalves, Carla Gonçalves, Paula Sampaio, José Paulo Wang, Qi-Ming Bai, Feng-Yan Wrobel, Russel L. Hittinger, Chris Todd |
| author |
Peris, David |
| author_facet |
Peris, David Ubbelohde, Emily J. Kuang, Meihua Christina Kominek, Jacek Langdon, Quinn K. Adams, María Koshalek, Justin A. Hulfachor, Amanda Beth Opulente, Dana A. Hall, David J. Hyma, Katie Fay, Justin C. Leducq, Jean-Baptiste Charron, Guillaume Landry, Christian R. Libkind Frati, Diego Gonçalves, Carla Gonçalves, Paula Sampaio, José Paulo Wang, Qi-Ming Bai, Feng-Yan Wrobel, Russel L. Hittinger, Chris Todd |
| author_role |
author |
| author2 |
Ubbelohde, Emily J. Kuang, Meihua Christina Kominek, Jacek Langdon, Quinn K. Adams, María Koshalek, Justin A. Hulfachor, Amanda Beth Opulente, Dana A. Hall, David J. Hyma, Katie Fay, Justin C. Leducq, Jean-Baptiste Charron, Guillaume Landry, Christian R. Libkind Frati, Diego Gonçalves, Carla Gonçalves, Paula Sampaio, José Paulo Wang, Qi-Ming Bai, Feng-Yan Wrobel, Russel L. Hittinger, Chris Todd |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author |
| dc.subject.none.fl_str_mv |
YEAST GENOMIC SACCHAROMYCES DIVERSITY |
| topic |
YEAST GENOMIC SACCHAROMYCES DIVERSITY |
| purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
| dc.description.none.fl_txt_mv |
Species is the fundamental unit to quantify biodiversity. In recent years, the model yeast Saccharomyces cerevisiae has seen an increased number of studies related to its geographical distribution, population structure, and phenotypic diversity. However, seven additional species from the same genus have been less thoroughly studied, which has limited our understanding of the macroevolutionary events leading to the diversification of this genus over the last 20 million years. Here, we show the geographies, hosts, substrates, and phylogenetic relationships for approximately 1,800 Saccharomyces strains, covering the complete genus with unprecedented breadth and depth. We generated and analyzed complete genome sequences of 163 strains and phenotyped 128 phylogenetically diverse strains. This dataset provides insights about genetic and phenotypic diversity within and between species and populations, quantifies reticulation and incomplete lineage sorting, and demonstrates how gene flow and selection have affected traits, such as galactose metabolism. These findings elevate the genus Saccharomyces as a model to understand biodiversity and evolution in microbial eukaryotes. Fil: Peris, David. Consejo Superior de Investigaciones Científicas. Instituto de Agroquímica y Tecnología de Alimentos; España. University of Oslo; Noruega. University of Wisconsin; Estados Unidos Fil: Ubbelohde, Emily J.. University of Wisconsin; Estados Unidos Fil: Kuang, Meihua Christina. University of Wisconsin; Estados Unidos Fil: Kominek, Jacek. University of Wisconsin; Estados Unidos Fil: Langdon, Quinn K.. University of Wisconsin; Estados Unidos Fil: Adams, María. University of Wisconsin; Estados Unidos Fil: Koshalek, Justin A.. University of Wisconsin; Estados Unidos Fil: Hulfachor, Amanda Beth. University of Wisconsin; Estados Unidos Fil: Opulente, Dana A.. University of Wisconsin; Estados Unidos Fil: Hall, David J.. University of Utrecht; Países Bajos Fil: Hyma, Katie. University of Rochester; Estados Unidos Fil: Fay, Justin C.. University of Rochester; Estados Unidos Fil: Leducq, Jean-Baptiste. Laval University; Canadá. University of Montreal; Canadá Fil: Charron, Guillaume. Laurentian Forestry Centre; Canadá Fil: Landry, Christian R.. Laval University; Canadá Fil: Libkind Frati, Diego. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales. Universidad Nacional del Comahue. Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales; Argentina. Universidad Nacional del Comahue. Centro Regional Universitario Bariloche; Argentina Fil: Gonçalves, Carla. Vanderbilt University; Estados Unidos. University of Wisconsin; Estados Unidos. Universidade Nova de Lisboa; Portugal Fil: Gonçalves, Paula. Universidade Nova de Lisboa; Portugal Fil: Sampaio, José Paulo. Universidade Nova de Lisboa; Portugal Fil: Wang, Qi-Ming. University of Wisconsin; Estados Unidos. Hebei University; China Fil: Bai, Feng-Yan. Chinese Academy of Sciences; República de China Fil: Wrobel, Russel L.. University of Wisconsin; Estados Unidos Fil: Hittinger, Chris Todd. University of Wisconsin; Estados Unidos |
| description |
Species is the fundamental unit to quantify biodiversity. In recent years, the model yeast Saccharomyces cerevisiae has seen an increased number of studies related to its geographical distribution, population structure, and phenotypic diversity. However, seven additional species from the same genus have been less thoroughly studied, which has limited our understanding of the macroevolutionary events leading to the diversification of this genus over the last 20 million years. Here, we show the geographies, hosts, substrates, and phylogenetic relationships for approximately 1,800 Saccharomyces strains, covering the complete genus with unprecedented breadth and depth. We generated and analyzed complete genome sequences of 163 strains and phenotyped 128 phylogenetically diverse strains. This dataset provides insights about genetic and phenotypic diversity within and between species and populations, quantifies reticulation and incomplete lineage sorting, and demonstrates how gene flow and selection have affected traits, such as galactose metabolism. These findings elevate the genus Saccharomyces as a model to understand biodiversity and evolution in microbial eukaryotes. |
| publishDate |
2023 |
| dc.date.none.fl_str_mv |
2023-12 |
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info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
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article |
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publishedVersion |
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http://hdl.handle.net/11336/241016 Peris, David; Ubbelohde, Emily J.; Kuang, Meihua Christina; Kominek, Jacek; Langdon, Quinn K.; et al.; Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces; Springer; Nature Communications; 14; 1; 12-2023; 1-19 2041-1723 CONICET Digital CONICET |
| url |
http://hdl.handle.net/11336/241016 |
| identifier_str_mv |
Peris, David; Ubbelohde, Emily J.; Kuang, Meihua Christina; Kominek, Jacek; Langdon, Quinn K.; et al.; Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces; Springer; Nature Communications; 14; 1; 12-2023; 1-19 2041-1723 CONICET Digital CONICET |
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eng |
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eng |
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info:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41467-023-36139-2 info:eu-repo/semantics/altIdentifier/doi/10.1038/s41467-023-36139-2 |
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dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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