Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas

Autores: Llamas, Bastien; Fehren Schmitz, Lars; Valverde, Guido; Soubrier, Julien; Mallick, Swapan; Rohland, Nadin; Nordenfelt, Susanne; Valdiosera, Cristina; Richards, Stephen M.; Rohrlach, Adam; Romero, Maria Inés Barreto; Espinoza, Isabel Flores; Cagigao, Elsa Tomasto; Jiménez, Lucía Watson; Makowski, Krzysztof; Reyna, Ilán Santiago Leboreiro; Lory, Josefina Mansilla; Torrez, Julio Alejandro Ballivián; Rivera, Mario A.; Burger, Richard L.; Ceruti, Maria Constanza; Reinhard, Johan; Wells, R. Spencer; Politis, Gustavo; Santoro, Calogero M.; Standen, Vivien G.; Smith, Colin; Reich, David; Ho, Simon Y. W.; Cooper, Alan; Haak, Wolfgang
Año de publicación: 2016
Idioma: inglés
Tipo de recurso: artículo
Estado: versión publicada
Descripción: The exact timing, route, and process of the initial peopling of the Americas remains uncertain despite much research. Archaeological evidence indicates the presence of humans as far as southern Chile by 14.6 thousand years ago (ka), shortly after the Pleistocene ice sheets blocking access from eastern Beringia began to retreat. Genetic estimates of the timing and route of entry have been constrained by the lack of suitable calibration points and low genetic diversity of Native Americans. We sequenced 92wholemitochondrial genomes from pre-Columbian South American skeletons dating from 8.6 to 0.5 ka, allowing a detailed, temporally calibrated reconstruction of the peopling of the Americas in a Bayesian coalescent analysis. The data suggest that a small population entered the Americas via a coastal route around 16.0 ka, following previous isolation in eastern Beringia for ∼2.4 to 9 thousand years after separation from eastern Siberian populations. Following a rapid movement throughout the Americas, limited gene flow in South America resulted in a marked phylogeographic structure of populations, which persisted through time. All of the ancient mitochondrial lineages detected in this study were absent from modern data sets, suggesting a high extinction rate. To investigate this further, we applied a novel principal components multiple logistic regression test to Bayesian serial coalescent simulations. The analysis supported a scenario in which European colonization caused a substantial loss of pre-Columbian lineages.
Fil: Llamas, Bastien. University of Adelaide; Australia
Fil: Fehren Schmitz, Lars. University of California; Estados Unidos
Fil: Valverde, Guido. University of Adelaide; Australia
Fil: Soubrier, Julien. University of Adelaide; Australia
Fil: Mallick, Swapan. Harvard Medical School; Estados Unidos. Broad Institute of Harvard and MIT; Estados Unidos
Fil: Rohland, Nadin. Harvard Medical School; Estados Unidos. Howard Hughes Medical Institute; Estados Unidos
Fil: Nordenfelt, Susanne. Harvard Medical School; Estados Unidos. Howard Hughes Medical Institute; Estados Unidos
Fil: Valdiosera, Cristina. La Trobe University; Australia
Fil: Richards, Stephen M.. University of Adelaide; Australia
Fil: Rohrlach, Adam. University of Adelaide; Australia
Fil: Romero, Maria Inés Barreto. Museo de Sitio Huaca Pucllana; Perú
Fil: Espinoza, Isabel Flores. Museo de Sitio Huaca Pucllana; Perú
Fil: Cagigao, Elsa Tomasto. Pontificia Universidad Católica de Perú; Perú
Fil: Jiménez, Lucía Watson. Pontificia Universidad Católica de Perú; Perú. Centro de Investigaciones Arqueológicas del Museo de Sitio de Ancón; Perú
Fil: Makowski, Krzysztof. Pontificia Universidad Católica de Perú; Perú
Fil: Reyna, Ilán Santiago Leboreiro. Instituto Nacional de Antropología E Historia; México
Fil: Lory, Josefina Mansilla. Instituto Nacional de Antropología E Historia; México
Fil: Torrez, Julio Alejandro Ballivián. Unidad de Arqueología y Museos; Bolivia
Fil: Rivera, Mario A.. Universidad de Magallanes; Chile
Fil: Burger, Richard L.. Harvard University; Estados Unidos
Fil: Ceruti, Maria Constanza. Universidad Católica de Salta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Reinhard, Johan. National Geographic Society; Estados Unidos
Fil: Wells, R. Spencer. National Geographic Society; Estados Unidos
Fil: Politis, Gustavo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano. Universidad Nacional del Centro de la Provincia de Buenos Aires. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano; Argentina
Fil: Santoro, Calogero M.. Universidad de Tarapacá; Chile
Fil: Standen, Vivien G.. Universidad de Tarapacá; Chile
Fil: Smith, Colin. La Trobe University; Australia
Fil: Reich, David. Harvard Medical School; Estados Unidos. Howard Hughes Medical Institute; Estados Unidos
Fil: Ho, Simon Y. W.. University of Sydney; Australia
Fil: Cooper, Alan. University of Adelaide; Australia
Fil: Haak, Wolfgang. University of Adelaide; Australia
Materia: Americas
Peopling
Ancient Dna
Pre-Columbian
Nivel de accesibilidad: acceso abierto
Condiciones de uso: https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
Institución: Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador: oai:ri.conicet.gov.ar:11336/61941

Acceder

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repository_id_str	3498
network_name_str	CONICET Digital (CONICET)
spelling	Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the AmericasLlamas, BastienFehren Schmitz, LarsValverde, GuidoSoubrier, JulienMallick, SwapanRohland, NadinNordenfelt, SusanneValdiosera, CristinaRichards, Stephen M.Rohrlach, AdamRomero, Maria Inés BarretoEspinoza, Isabel FloresCagigao, Elsa TomastoJiménez, Lucía WatsonMakowski, KrzysztofReyna, Ilán Santiago LeboreiroLory, Josefina MansillaTorrez, Julio Alejandro BalliviánRivera, Mario A.Burger, Richard L.Ceruti, Maria ConstanzaReinhard, JohanWells, R. SpencerPolitis, GustavoSantoro, Calogero M.Standen, Vivien G.Smith, ColinReich, DavidHo, Simon Y. W.Cooper, AlanHaak, WolfgangAmericasPeoplingAncient DnaPre-Columbianhttps://purl.org/becyt/ford/5.9https://purl.org/becyt/ford/5The exact timing, route, and process of the initial peopling of the Americas remains uncertain despite much research. Archaeological evidence indicates the presence of humans as far as southern Chile by 14.6 thousand years ago (ka), shortly after the Pleistocene ice sheets blocking access from eastern Beringia began to retreat. Genetic estimates of the timing and route of entry have been constrained by the lack of suitable calibration points and low genetic diversity of Native Americans. We sequenced 92wholemitochondrial genomes from pre-Columbian South American skeletons dating from 8.6 to 0.5 ka, allowing a detailed, temporally calibrated reconstruction of the peopling of the Americas in a Bayesian coalescent analysis. The data suggest that a small population entered the Americas via a coastal route around 16.0 ka, following previous isolation in eastern Beringia for ∼2.4 to 9 thousand years after separation from eastern Siberian populations. Following a rapid movement throughout the Americas, limited gene flow in South America resulted in a marked phylogeographic structure of populations, which persisted through time. All of the ancient mitochondrial lineages detected in this study were absent from modern data sets, suggesting a high extinction rate. To investigate this further, we applied a novel principal components multiple logistic regression test to Bayesian serial coalescent simulations. The analysis supported a scenario in which European colonization caused a substantial loss of pre-Columbian lineages.Fil: Llamas, Bastien. University of Adelaide; AustraliaFil: Fehren Schmitz, Lars. University of California; Estados UnidosFil: Valverde, Guido. University of Adelaide; AustraliaFil: Soubrier, Julien. University of Adelaide; AustraliaFil: Mallick, Swapan. Harvard Medical School; Estados Unidos. Broad Institute of Harvard and MIT; Estados UnidosFil: Rohland, Nadin. Harvard Medical School; Estados Unidos. Howard Hughes Medical Institute; Estados UnidosFil: Nordenfelt, Susanne. Harvard Medical School; Estados Unidos. Howard Hughes Medical Institute; Estados UnidosFil: Valdiosera, Cristina. La Trobe University; AustraliaFil: Richards, Stephen M.. University of Adelaide; AustraliaFil: Rohrlach, Adam. University of Adelaide; AustraliaFil: Romero, Maria Inés Barreto. Museo de Sitio Huaca Pucllana; PerúFil: Espinoza, Isabel Flores. Museo de Sitio Huaca Pucllana; PerúFil: Cagigao, Elsa Tomasto. Pontificia Universidad Católica de Perú; PerúFil: Jiménez, Lucía Watson. Pontificia Universidad Católica de Perú; Perú. Centro de Investigaciones Arqueológicas del Museo de Sitio de Ancón; PerúFil: Makowski, Krzysztof. Pontificia Universidad Católica de Perú; PerúFil: Reyna, Ilán Santiago Leboreiro. Instituto Nacional de Antropología E Historia; MéxicoFil: Lory, Josefina Mansilla. Instituto Nacional de Antropología E Historia; MéxicoFil: Torrez, Julio Alejandro Ballivián. Unidad de Arqueología y Museos; BoliviaFil: Rivera, Mario A.. Universidad de Magallanes; ChileFil: Burger, Richard L.. Harvard University; Estados UnidosFil: Ceruti, Maria Constanza. Universidad Católica de Salta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Reinhard, Johan. National Geographic Society; Estados UnidosFil: Wells, R. Spencer. National Geographic Society; Estados UnidosFil: Politis, Gustavo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano. Universidad Nacional del Centro de la Provincia de Buenos Aires. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano; ArgentinaFil: Santoro, Calogero M.. Universidad de Tarapacá; ChileFil: Standen, Vivien G.. Universidad de Tarapacá; ChileFil: Smith, Colin. La Trobe University; AustraliaFil: Reich, David. Harvard Medical School; Estados Unidos. Howard Hughes Medical Institute; Estados UnidosFil: Ho, Simon Y. W.. University of Sydney; AustraliaFil: Cooper, Alan. University of Adelaide; AustraliaFil: Haak, Wolfgang. University of Adelaide; AustraliaScience Advances is the American Association for the Advancement of Science2016-04info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/61941Llamas, Bastien; Fehren Schmitz, Lars; Valverde, Guido; Soubrier, Julien; Mallick, Swapan; et al.; Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas; Science Advances is the American Association for the Advancement of Science; Science Advances; 2; 4; 4-2016; 1-102375-2548CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1126/sciadv.1501385info:eu-repo/semantics/altIdentifier/url/http://advances.sciencemag.org/cgi/content/full/2/4/e1501385/DC1info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T09:52:09Zoai:ri.conicet.gov.ar:11336/61941instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 09:52:09.757CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv	Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
title	Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
spellingShingle	Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas Llamas, Bastien Americas Peopling Ancient Dna Pre-Columbian
title_short	Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
title_full	Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
title_fullStr	Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
title_full_unstemmed	Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
title_sort	Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
dc.creator.none.fl_str_mv	Llamas, Bastien Fehren Schmitz, Lars Valverde, Guido Soubrier, Julien Mallick, Swapan Rohland, Nadin Nordenfelt, Susanne Valdiosera, Cristina Richards, Stephen M. Rohrlach, Adam Romero, Maria Inés Barreto Espinoza, Isabel Flores Cagigao, Elsa Tomasto Jiménez, Lucía Watson Makowski, Krzysztof Reyna, Ilán Santiago Leboreiro Lory, Josefina Mansilla Torrez, Julio Alejandro Ballivián Rivera, Mario A. Burger, Richard L. Ceruti, Maria Constanza Reinhard, Johan Wells, R. Spencer Politis, Gustavo Santoro, Calogero M. Standen, Vivien G. Smith, Colin Reich, David Ho, Simon Y. W. Cooper, Alan Haak, Wolfgang
author	Llamas, Bastien
author_facet	Llamas, Bastien Fehren Schmitz, Lars Valverde, Guido Soubrier, Julien Mallick, Swapan Rohland, Nadin Nordenfelt, Susanne Valdiosera, Cristina Richards, Stephen M. Rohrlach, Adam Romero, Maria Inés Barreto Espinoza, Isabel Flores Cagigao, Elsa Tomasto Jiménez, Lucía Watson Makowski, Krzysztof Reyna, Ilán Santiago Leboreiro Lory, Josefina Mansilla Torrez, Julio Alejandro Ballivián Rivera, Mario A. Burger, Richard L. Ceruti, Maria Constanza Reinhard, Johan Wells, R. Spencer Politis, Gustavo Santoro, Calogero M. Standen, Vivien G. Smith, Colin Reich, David Ho, Simon Y. W. Cooper, Alan Haak, Wolfgang
author_role	author
author2	Fehren Schmitz, Lars Valverde, Guido Soubrier, Julien Mallick, Swapan Rohland, Nadin Nordenfelt, Susanne Valdiosera, Cristina Richards, Stephen M. Rohrlach, Adam Romero, Maria Inés Barreto Espinoza, Isabel Flores Cagigao, Elsa Tomasto Jiménez, Lucía Watson Makowski, Krzysztof Reyna, Ilán Santiago Leboreiro Lory, Josefina Mansilla Torrez, Julio Alejandro Ballivián Rivera, Mario A. Burger, Richard L. Ceruti, Maria Constanza Reinhard, Johan Wells, R. Spencer Politis, Gustavo Santoro, Calogero M. Standen, Vivien G. Smith, Colin Reich, David Ho, Simon Y. W. Cooper, Alan Haak, Wolfgang
author2_role	author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author
dc.subject.none.fl_str_mv	Americas Peopling Ancient Dna Pre-Columbian
topic	Americas Peopling Ancient Dna Pre-Columbian
purl_subject.fl_str_mv	https://purl.org/becyt/ford/5.9 https://purl.org/becyt/ford/5
dc.description.none.fl_txt_mv	The exact timing, route, and process of the initial peopling of the Americas remains uncertain despite much research. Archaeological evidence indicates the presence of humans as far as southern Chile by 14.6 thousand years ago (ka), shortly after the Pleistocene ice sheets blocking access from eastern Beringia began to retreat. Genetic estimates of the timing and route of entry have been constrained by the lack of suitable calibration points and low genetic diversity of Native Americans. We sequenced 92wholemitochondrial genomes from pre-Columbian South American skeletons dating from 8.6 to 0.5 ka, allowing a detailed, temporally calibrated reconstruction of the peopling of the Americas in a Bayesian coalescent analysis. The data suggest that a small population entered the Americas via a coastal route around 16.0 ka, following previous isolation in eastern Beringia for ∼2.4 to 9 thousand years after separation from eastern Siberian populations. Following a rapid movement throughout the Americas, limited gene flow in South America resulted in a marked phylogeographic structure of populations, which persisted through time. All of the ancient mitochondrial lineages detected in this study were absent from modern data sets, suggesting a high extinction rate. To investigate this further, we applied a novel principal components multiple logistic regression test to Bayesian serial coalescent simulations. The analysis supported a scenario in which European colonization caused a substantial loss of pre-Columbian lineages. Fil: Llamas, Bastien. University of Adelaide; Australia Fil: Fehren Schmitz, Lars. University of California; Estados Unidos Fil: Valverde, Guido. University of Adelaide; Australia Fil: Soubrier, Julien. University of Adelaide; Australia Fil: Mallick, Swapan. Harvard Medical School; Estados Unidos. Broad Institute of Harvard and MIT; Estados Unidos Fil: Rohland, Nadin. Harvard Medical School; Estados Unidos. Howard Hughes Medical Institute; Estados Unidos Fil: Nordenfelt, Susanne. Harvard Medical School; Estados Unidos. Howard Hughes Medical Institute; Estados Unidos Fil: Valdiosera, Cristina. La Trobe University; Australia Fil: Richards, Stephen M.. University of Adelaide; Australia Fil: Rohrlach, Adam. University of Adelaide; Australia Fil: Romero, Maria Inés Barreto. Museo de Sitio Huaca Pucllana; Perú Fil: Espinoza, Isabel Flores. Museo de Sitio Huaca Pucllana; Perú Fil: Cagigao, Elsa Tomasto. Pontificia Universidad Católica de Perú; Perú Fil: Jiménez, Lucía Watson. Pontificia Universidad Católica de Perú; Perú. Centro de Investigaciones Arqueológicas del Museo de Sitio de Ancón; Perú Fil: Makowski, Krzysztof. Pontificia Universidad Católica de Perú; Perú Fil: Reyna, Ilán Santiago Leboreiro. Instituto Nacional de Antropología E Historia; México Fil: Lory, Josefina Mansilla. Instituto Nacional de Antropología E Historia; México Fil: Torrez, Julio Alejandro Ballivián. Unidad de Arqueología y Museos; Bolivia Fil: Rivera, Mario A.. Universidad de Magallanes; Chile Fil: Burger, Richard L.. Harvard University; Estados Unidos Fil: Ceruti, Maria Constanza. Universidad Católica de Salta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Reinhard, Johan. National Geographic Society; Estados Unidos Fil: Wells, R. Spencer. National Geographic Society; Estados Unidos Fil: Politis, Gustavo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano. Universidad Nacional del Centro de la Provincia de Buenos Aires. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano; Argentina Fil: Santoro, Calogero M.. Universidad de Tarapacá; Chile Fil: Standen, Vivien G.. Universidad de Tarapacá; Chile Fil: Smith, Colin. La Trobe University; Australia Fil: Reich, David. Harvard Medical School; Estados Unidos. Howard Hughes Medical Institute; Estados Unidos Fil: Ho, Simon Y. W.. University of Sydney; Australia Fil: Cooper, Alan. University of Adelaide; Australia Fil: Haak, Wolfgang. University of Adelaide; Australia
description	The exact timing, route, and process of the initial peopling of the Americas remains uncertain despite much research. Archaeological evidence indicates the presence of humans as far as southern Chile by 14.6 thousand years ago (ka), shortly after the Pleistocene ice sheets blocking access from eastern Beringia began to retreat. Genetic estimates of the timing and route of entry have been constrained by the lack of suitable calibration points and low genetic diversity of Native Americans. We sequenced 92wholemitochondrial genomes from pre-Columbian South American skeletons dating from 8.6 to 0.5 ka, allowing a detailed, temporally calibrated reconstruction of the peopling of the Americas in a Bayesian coalescent analysis. The data suggest that a small population entered the Americas via a coastal route around 16.0 ka, following previous isolation in eastern Beringia for ∼2.4 to 9 thousand years after separation from eastern Siberian populations. Following a rapid movement throughout the Americas, limited gene flow in South America resulted in a marked phylogeographic structure of populations, which persisted through time. All of the ancient mitochondrial lineages detected in this study were absent from modern data sets, suggesting a high extinction rate. To investigate this further, we applied a novel principal components multiple logistic regression test to Bayesian serial coalescent simulations. The analysis supported a scenario in which European colonization caused a substantial loss of pre-Columbian lineages.
publishDate	2016
dc.date.none.fl_str_mv	2016-04
dc.type.none.fl_str_mv	info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo
format	article
status_str	publishedVersion
dc.identifier.none.fl_str_mv	http://hdl.handle.net/11336/61941 Llamas, Bastien; Fehren Schmitz, Lars; Valverde, Guido; Soubrier, Julien; Mallick, Swapan; et al.; Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas; Science Advances is the American Association for the Advancement of Science; Science Advances; 2; 4; 4-2016; 1-10 2375-2548 CONICET Digital CONICET
url	http://hdl.handle.net/11336/61941
identifier_str_mv	Llamas, Bastien; Fehren Schmitz, Lars; Valverde, Guido; Soubrier, Julien; Mallick, Swapan; et al.; Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas; Science Advances is the American Association for the Advancement of Science; Science Advances; 2; 4; 4-2016; 1-10 2375-2548 CONICET Digital CONICET
dc.language.none.fl_str_mv	eng
language	eng
dc.relation.none.fl_str_mv	info:eu-repo/semantics/altIdentifier/doi/10.1126/sciadv.1501385 info:eu-repo/semantics/altIdentifier/url/http://advances.sciencemag.org/cgi/content/full/2/4/e1501385/DC1
dc.rights.none.fl_str_mv	info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv	openAccess
rights_invalid_str_mv	https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv	application/pdf application/pdf
dc.publisher.none.fl_str_mv	Science Advances is the American Association for the Advancement of Science
publisher.none.fl_str_mv	Science Advances is the American Association for the Advancement of Science
dc.source.none.fl_str_mv	reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str	CONICET Digital (CONICET)
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repository.mail.fl_str_mv	dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas

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