Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group

Autores
Lavagnino, N.; Serra, F.; Arbiza, L.; Dopazo, H.; Hasson, E.
Año de publicación
2011
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Abstract: Previous comparative genomic studies of genes involved in olfactory behavior in Drosophila focused only on particular gene families such as odorant receptor and/or odorant binding proteins. However, olfactory behavior has a complex genetic architecture that is orchestrated by many interacting genes. In this paper, we present a comparative genomic study of olfactory behavior in Drosophila including an extended set of genes known to affect olfactory behavior. We took advantage of the recent burst of whole genome sequences and the development of powerful statistical tools to analyze genomic data and test evolutionary and functional hypotheses of olfactory genes in the six species of the Drosophila melanogaster species group for which whole genome sequences are available. Our study reveals widespread purifying selection and limited incidence of positive selection on olfactory genes. We show that the pace of evolution of olfactory genes is mostly independent of the life cycle stage, and of the number of life cycle stages, in which they participate in olfaction. However, we detected a relationship between evolutionary rates and the position that the gene products occupy in the olfactory system, genes occupying central positions tend to be more constrained than peripheral genes. Finally, we demonstrate that specialization to one host does not seem to be associated with bursts of adaptive evolution in olfactory genes in D. sechellia and D. erecta, the two specialists species analyzed, but rather different lineages have idiosyncratic evolutionary histories in which both historical and ecological factors have been involved. © the author(s), publisher and licensee Libertas Academica Ltd.
Fil:Lavagnino, N. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fil:Dopazo, H. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fil:Hasson, E. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fuente
Evol. Bioinformatics 2011;2011(7):89-104
Materia
Adaptation
Drosophila melanogaster species group
Evolutionary genomics
Insects
Olfactory behavior
arthropod life cycle stage
article
controlled study
Drosophila
Drosophila ananassae
drosophila erecta
Drosophila melanogaster
Drosophila sechellia
Drosophila simulans
Drosophila yakuba
evolutionary rate
gene sequence
insect genetics
insect genome
molecular evolution
nonhuman
olfactory system
smelling
Drosophila erecta
Drosophila melanogaster
Drosophila sechellia
Hexapoda
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by/2.5/ar
Repositorio
Biblioteca Digital (UBA-FCEN)
Institución
Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales
OAI Identificador
paperaa:paper_11769343_v2011_n7_p89_Lavagnino

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oai_identifier_str paperaa:paper_11769343_v2011_n7_p89_Lavagnino
network_acronym_str BDUBAFCEN
repository_id_str 1896
network_name_str Biblioteca Digital (UBA-FCEN)
spelling Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species groupLavagnino, N.Serra, F.Arbiza, L.Dopazo, H.Hasson, E.AdaptationDrosophila melanogaster species groupEvolutionary genomicsInsectsOlfactory behaviorarthropod life cycle stagearticlecontrolled studyDrosophilaDrosophila ananassaedrosophila erectaDrosophila melanogasterDrosophila sechelliaDrosophila simulansDrosophila yakubaevolutionary rategene sequenceinsect geneticsinsect genomemolecular evolutionnonhumanolfactory systemsmellingDrosophila erectaDrosophila melanogasterDrosophila sechelliaHexapodaAbstract: Previous comparative genomic studies of genes involved in olfactory behavior in Drosophila focused only on particular gene families such as odorant receptor and/or odorant binding proteins. However, olfactory behavior has a complex genetic architecture that is orchestrated by many interacting genes. In this paper, we present a comparative genomic study of olfactory behavior in Drosophila including an extended set of genes known to affect olfactory behavior. We took advantage of the recent burst of whole genome sequences and the development of powerful statistical tools to analyze genomic data and test evolutionary and functional hypotheses of olfactory genes in the six species of the Drosophila melanogaster species group for which whole genome sequences are available. Our study reveals widespread purifying selection and limited incidence of positive selection on olfactory genes. We show that the pace of evolution of olfactory genes is mostly independent of the life cycle stage, and of the number of life cycle stages, in which they participate in olfaction. However, we detected a relationship between evolutionary rates and the position that the gene products occupy in the olfactory system, genes occupying central positions tend to be more constrained than peripheral genes. Finally, we demonstrate that specialization to one host does not seem to be associated with bursts of adaptive evolution in olfactory genes in D. sechellia and D. erecta, the two specialists species analyzed, but rather different lineages have idiosyncratic evolutionary histories in which both historical and ecological factors have been involved. © the author(s), publisher and licensee Libertas Academica Ltd.Fil:Lavagnino, N. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.Fil:Dopazo, H. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.Fil:Hasson, E. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.2011info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12110/paper_11769343_v2011_n7_p89_LavagninoEvol. Bioinformatics 2011;2011(7):89-104reponame:Biblioteca Digital (UBA-FCEN)instname:Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturalesinstacron:UBA-FCENenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by/2.5/ar2025-10-16T09:30:17Zpaperaa:paper_11769343_v2011_n7_p89_LavagninoInstitucionalhttps://digital.bl.fcen.uba.ar/Universidad públicaNo correspondehttps://digital.bl.fcen.uba.ar/cgi-bin/oaiserver.cgiana@bl.fcen.uba.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:18962025-10-16 09:30:19.2Biblioteca Digital (UBA-FCEN) - Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturalesfalse
dc.title.none.fl_str_mv Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
title Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
spellingShingle Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
Lavagnino, N.
Adaptation
Drosophila melanogaster species group
Evolutionary genomics
Insects
Olfactory behavior
arthropod life cycle stage
article
controlled study
Drosophila
Drosophila ananassae
drosophila erecta
Drosophila melanogaster
Drosophila sechellia
Drosophila simulans
Drosophila yakuba
evolutionary rate
gene sequence
insect genetics
insect genome
molecular evolution
nonhuman
olfactory system
smelling
Drosophila erecta
Drosophila melanogaster
Drosophila sechellia
Hexapoda
title_short Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
title_full Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
title_fullStr Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
title_full_unstemmed Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
title_sort Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
dc.creator.none.fl_str_mv Lavagnino, N.
Serra, F.
Arbiza, L.
Dopazo, H.
Hasson, E.
author Lavagnino, N.
author_facet Lavagnino, N.
Serra, F.
Arbiza, L.
Dopazo, H.
Hasson, E.
author_role author
author2 Serra, F.
Arbiza, L.
Dopazo, H.
Hasson, E.
author2_role author
author
author
author
dc.subject.none.fl_str_mv Adaptation
Drosophila melanogaster species group
Evolutionary genomics
Insects
Olfactory behavior
arthropod life cycle stage
article
controlled study
Drosophila
Drosophila ananassae
drosophila erecta
Drosophila melanogaster
Drosophila sechellia
Drosophila simulans
Drosophila yakuba
evolutionary rate
gene sequence
insect genetics
insect genome
molecular evolution
nonhuman
olfactory system
smelling
Drosophila erecta
Drosophila melanogaster
Drosophila sechellia
Hexapoda
topic Adaptation
Drosophila melanogaster species group
Evolutionary genomics
Insects
Olfactory behavior
arthropod life cycle stage
article
controlled study
Drosophila
Drosophila ananassae
drosophila erecta
Drosophila melanogaster
Drosophila sechellia
Drosophila simulans
Drosophila yakuba
evolutionary rate
gene sequence
insect genetics
insect genome
molecular evolution
nonhuman
olfactory system
smelling
Drosophila erecta
Drosophila melanogaster
Drosophila sechellia
Hexapoda
dc.description.none.fl_txt_mv Abstract: Previous comparative genomic studies of genes involved in olfactory behavior in Drosophila focused only on particular gene families such as odorant receptor and/or odorant binding proteins. However, olfactory behavior has a complex genetic architecture that is orchestrated by many interacting genes. In this paper, we present a comparative genomic study of olfactory behavior in Drosophila including an extended set of genes known to affect olfactory behavior. We took advantage of the recent burst of whole genome sequences and the development of powerful statistical tools to analyze genomic data and test evolutionary and functional hypotheses of olfactory genes in the six species of the Drosophila melanogaster species group for which whole genome sequences are available. Our study reveals widespread purifying selection and limited incidence of positive selection on olfactory genes. We show that the pace of evolution of olfactory genes is mostly independent of the life cycle stage, and of the number of life cycle stages, in which they participate in olfaction. However, we detected a relationship between evolutionary rates and the position that the gene products occupy in the olfactory system, genes occupying central positions tend to be more constrained than peripheral genes. Finally, we demonstrate that specialization to one host does not seem to be associated with bursts of adaptive evolution in olfactory genes in D. sechellia and D. erecta, the two specialists species analyzed, but rather different lineages have idiosyncratic evolutionary histories in which both historical and ecological factors have been involved. © the author(s), publisher and licensee Libertas Academica Ltd.
Fil:Lavagnino, N. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fil:Dopazo, H. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fil:Hasson, E. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
description Abstract: Previous comparative genomic studies of genes involved in olfactory behavior in Drosophila focused only on particular gene families such as odorant receptor and/or odorant binding proteins. However, olfactory behavior has a complex genetic architecture that is orchestrated by many interacting genes. In this paper, we present a comparative genomic study of olfactory behavior in Drosophila including an extended set of genes known to affect olfactory behavior. We took advantage of the recent burst of whole genome sequences and the development of powerful statistical tools to analyze genomic data and test evolutionary and functional hypotheses of olfactory genes in the six species of the Drosophila melanogaster species group for which whole genome sequences are available. Our study reveals widespread purifying selection and limited incidence of positive selection on olfactory genes. We show that the pace of evolution of olfactory genes is mostly independent of the life cycle stage, and of the number of life cycle stages, in which they participate in olfaction. However, we detected a relationship between evolutionary rates and the position that the gene products occupy in the olfactory system, genes occupying central positions tend to be more constrained than peripheral genes. Finally, we demonstrate that specialization to one host does not seem to be associated with bursts of adaptive evolution in olfactory genes in D. sechellia and D. erecta, the two specialists species analyzed, but rather different lineages have idiosyncratic evolutionary histories in which both historical and ecological factors have been involved. © the author(s), publisher and licensee Libertas Academica Ltd.
publishDate 2011
dc.date.none.fl_str_mv 2011
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12110/paper_11769343_v2011_n7_p89_Lavagnino
url http://hdl.handle.net/20.500.12110/paper_11769343_v2011_n7_p89_Lavagnino
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by/2.5/ar
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by/2.5/ar
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Evol. Bioinformatics 2011;2011(7):89-104
reponame:Biblioteca Digital (UBA-FCEN)
instname:Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales
instacron:UBA-FCEN
reponame_str Biblioteca Digital (UBA-FCEN)
collection Biblioteca Digital (UBA-FCEN)
instname_str Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales
instacron_str UBA-FCEN
institution UBA-FCEN
repository.name.fl_str_mv Biblioteca Digital (UBA-FCEN) - Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales
repository.mail.fl_str_mv ana@bl.fcen.uba.ar
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