Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
- Autores
- Lavagnino, N.; Serra, F.; Arbiza, L.; Dopazo, H.; Hasson, E.
- Año de publicación
- 2011
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Abstract: Previous comparative genomic studies of genes involved in olfactory behavior in Drosophila focused only on particular gene families such as odorant receptor and/or odorant binding proteins. However, olfactory behavior has a complex genetic architecture that is orchestrated by many interacting genes. In this paper, we present a comparative genomic study of olfactory behavior in Drosophila including an extended set of genes known to affect olfactory behavior. We took advantage of the recent burst of whole genome sequences and the development of powerful statistical tools to analyze genomic data and test evolutionary and functional hypotheses of olfactory genes in the six species of the Drosophila melanogaster species group for which whole genome sequences are available. Our study reveals widespread purifying selection and limited incidence of positive selection on olfactory genes. We show that the pace of evolution of olfactory genes is mostly independent of the life cycle stage, and of the number of life cycle stages, in which they participate in olfaction. However, we detected a relationship between evolutionary rates and the position that the gene products occupy in the olfactory system, genes occupying central positions tend to be more constrained than peripheral genes. Finally, we demonstrate that specialization to one host does not seem to be associated with bursts of adaptive evolution in olfactory genes in D. sechellia and D. erecta, the two specialists species analyzed, but rather different lineages have idiosyncratic evolutionary histories in which both historical and ecological factors have been involved. © the author(s), publisher and licensee Libertas Academica Ltd.
Fil:Lavagnino, N. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fil:Dopazo, H. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
Fil:Hasson, E. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. - Fuente
- Evol. Bioinformatics 2011;2011(7):89-104
- Materia
-
Adaptation
Drosophila melanogaster species group
Evolutionary genomics
Insects
Olfactory behavior
arthropod life cycle stage
article
controlled study
Drosophila
Drosophila ananassae
drosophila erecta
Drosophila melanogaster
Drosophila sechellia
Drosophila simulans
Drosophila yakuba
evolutionary rate
gene sequence
insect genetics
insect genome
molecular evolution
nonhuman
olfactory system
smelling
Drosophila erecta
Drosophila melanogaster
Drosophila sechellia
Hexapoda - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- http://creativecommons.org/licenses/by/2.5/ar
- Repositorio
- Institución
- Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales
- OAI Identificador
- paperaa:paper_11769343_v2011_n7_p89_Lavagnino
Ver los metadatos del registro completo
id |
BDUBAFCEN_c00069e1e39848b9262aff0667c67c9e |
---|---|
oai_identifier_str |
paperaa:paper_11769343_v2011_n7_p89_Lavagnino |
network_acronym_str |
BDUBAFCEN |
repository_id_str |
1896 |
network_name_str |
Biblioteca Digital (UBA-FCEN) |
spelling |
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species groupLavagnino, N.Serra, F.Arbiza, L.Dopazo, H.Hasson, E.AdaptationDrosophila melanogaster species groupEvolutionary genomicsInsectsOlfactory behaviorarthropod life cycle stagearticlecontrolled studyDrosophilaDrosophila ananassaedrosophila erectaDrosophila melanogasterDrosophila sechelliaDrosophila simulansDrosophila yakubaevolutionary rategene sequenceinsect geneticsinsect genomemolecular evolutionnonhumanolfactory systemsmellingDrosophila erectaDrosophila melanogasterDrosophila sechelliaHexapodaAbstract: Previous comparative genomic studies of genes involved in olfactory behavior in Drosophila focused only on particular gene families such as odorant receptor and/or odorant binding proteins. However, olfactory behavior has a complex genetic architecture that is orchestrated by many interacting genes. In this paper, we present a comparative genomic study of olfactory behavior in Drosophila including an extended set of genes known to affect olfactory behavior. We took advantage of the recent burst of whole genome sequences and the development of powerful statistical tools to analyze genomic data and test evolutionary and functional hypotheses of olfactory genes in the six species of the Drosophila melanogaster species group for which whole genome sequences are available. Our study reveals widespread purifying selection and limited incidence of positive selection on olfactory genes. We show that the pace of evolution of olfactory genes is mostly independent of the life cycle stage, and of the number of life cycle stages, in which they participate in olfaction. However, we detected a relationship between evolutionary rates and the position that the gene products occupy in the olfactory system, genes occupying central positions tend to be more constrained than peripheral genes. Finally, we demonstrate that specialization to one host does not seem to be associated with bursts of adaptive evolution in olfactory genes in D. sechellia and D. erecta, the two specialists species analyzed, but rather different lineages have idiosyncratic evolutionary histories in which both historical and ecological factors have been involved. © the author(s), publisher and licensee Libertas Academica Ltd.Fil:Lavagnino, N. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.Fil:Dopazo, H. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.Fil:Hasson, E. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.2011info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12110/paper_11769343_v2011_n7_p89_LavagninoEvol. Bioinformatics 2011;2011(7):89-104reponame:Biblioteca Digital (UBA-FCEN)instname:Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturalesinstacron:UBA-FCENenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by/2.5/ar2025-10-16T09:30:17Zpaperaa:paper_11769343_v2011_n7_p89_LavagninoInstitucionalhttps://digital.bl.fcen.uba.ar/Universidad públicaNo correspondehttps://digital.bl.fcen.uba.ar/cgi-bin/oaiserver.cgiana@bl.fcen.uba.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:18962025-10-16 09:30:19.2Biblioteca Digital (UBA-FCEN) - Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturalesfalse |
dc.title.none.fl_str_mv |
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group |
title |
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group |
spellingShingle |
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group Lavagnino, N. Adaptation Drosophila melanogaster species group Evolutionary genomics Insects Olfactory behavior arthropod life cycle stage article controlled study Drosophila Drosophila ananassae drosophila erecta Drosophila melanogaster Drosophila sechellia Drosophila simulans Drosophila yakuba evolutionary rate gene sequence insect genetics insect genome molecular evolution nonhuman olfactory system smelling Drosophila erecta Drosophila melanogaster Drosophila sechellia Hexapoda |
title_short |
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group |
title_full |
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group |
title_fullStr |
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group |
title_full_unstemmed |
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group |
title_sort |
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group |
dc.creator.none.fl_str_mv |
Lavagnino, N. Serra, F. Arbiza, L. Dopazo, H. Hasson, E. |
author |
Lavagnino, N. |
author_facet |
Lavagnino, N. Serra, F. Arbiza, L. Dopazo, H. Hasson, E. |
author_role |
author |
author2 |
Serra, F. Arbiza, L. Dopazo, H. Hasson, E. |
author2_role |
author author author author |
dc.subject.none.fl_str_mv |
Adaptation Drosophila melanogaster species group Evolutionary genomics Insects Olfactory behavior arthropod life cycle stage article controlled study Drosophila Drosophila ananassae drosophila erecta Drosophila melanogaster Drosophila sechellia Drosophila simulans Drosophila yakuba evolutionary rate gene sequence insect genetics insect genome molecular evolution nonhuman olfactory system smelling Drosophila erecta Drosophila melanogaster Drosophila sechellia Hexapoda |
topic |
Adaptation Drosophila melanogaster species group Evolutionary genomics Insects Olfactory behavior arthropod life cycle stage article controlled study Drosophila Drosophila ananassae drosophila erecta Drosophila melanogaster Drosophila sechellia Drosophila simulans Drosophila yakuba evolutionary rate gene sequence insect genetics insect genome molecular evolution nonhuman olfactory system smelling Drosophila erecta Drosophila melanogaster Drosophila sechellia Hexapoda |
dc.description.none.fl_txt_mv |
Abstract: Previous comparative genomic studies of genes involved in olfactory behavior in Drosophila focused only on particular gene families such as odorant receptor and/or odorant binding proteins. However, olfactory behavior has a complex genetic architecture that is orchestrated by many interacting genes. In this paper, we present a comparative genomic study of olfactory behavior in Drosophila including an extended set of genes known to affect olfactory behavior. We took advantage of the recent burst of whole genome sequences and the development of powerful statistical tools to analyze genomic data and test evolutionary and functional hypotheses of olfactory genes in the six species of the Drosophila melanogaster species group for which whole genome sequences are available. Our study reveals widespread purifying selection and limited incidence of positive selection on olfactory genes. We show that the pace of evolution of olfactory genes is mostly independent of the life cycle stage, and of the number of life cycle stages, in which they participate in olfaction. However, we detected a relationship between evolutionary rates and the position that the gene products occupy in the olfactory system, genes occupying central positions tend to be more constrained than peripheral genes. Finally, we demonstrate that specialization to one host does not seem to be associated with bursts of adaptive evolution in olfactory genes in D. sechellia and D. erecta, the two specialists species analyzed, but rather different lineages have idiosyncratic evolutionary histories in which both historical and ecological factors have been involved. © the author(s), publisher and licensee Libertas Academica Ltd. Fil:Lavagnino, N. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Dopazo, H. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Hasson, E. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. |
description |
Abstract: Previous comparative genomic studies of genes involved in olfactory behavior in Drosophila focused only on particular gene families such as odorant receptor and/or odorant binding proteins. However, olfactory behavior has a complex genetic architecture that is orchestrated by many interacting genes. In this paper, we present a comparative genomic study of olfactory behavior in Drosophila including an extended set of genes known to affect olfactory behavior. We took advantage of the recent burst of whole genome sequences and the development of powerful statistical tools to analyze genomic data and test evolutionary and functional hypotheses of olfactory genes in the six species of the Drosophila melanogaster species group for which whole genome sequences are available. Our study reveals widespread purifying selection and limited incidence of positive selection on olfactory genes. We show that the pace of evolution of olfactory genes is mostly independent of the life cycle stage, and of the number of life cycle stages, in which they participate in olfaction. However, we detected a relationship between evolutionary rates and the position that the gene products occupy in the olfactory system, genes occupying central positions tend to be more constrained than peripheral genes. Finally, we demonstrate that specialization to one host does not seem to be associated with bursts of adaptive evolution in olfactory genes in D. sechellia and D. erecta, the two specialists species analyzed, but rather different lineages have idiosyncratic evolutionary histories in which both historical and ecological factors have been involved. © the author(s), publisher and licensee Libertas Academica Ltd. |
publishDate |
2011 |
dc.date.none.fl_str_mv |
2011 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/20.500.12110/paper_11769343_v2011_n7_p89_Lavagnino |
url |
http://hdl.handle.net/20.500.12110/paper_11769343_v2011_n7_p89_Lavagnino |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by/2.5/ar |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by/2.5/ar |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
Evol. Bioinformatics 2011;2011(7):89-104 reponame:Biblioteca Digital (UBA-FCEN) instname:Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales instacron:UBA-FCEN |
reponame_str |
Biblioteca Digital (UBA-FCEN) |
collection |
Biblioteca Digital (UBA-FCEN) |
instname_str |
Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales |
instacron_str |
UBA-FCEN |
institution |
UBA-FCEN |
repository.name.fl_str_mv |
Biblioteca Digital (UBA-FCEN) - Universidad Nacional de Buenos Aires. Facultad de Ciencias Exactas y Naturales |
repository.mail.fl_str_mv |
ana@bl.fcen.uba.ar |
_version_ |
1846142849437925376 |
score |
12.712165 |