Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling

Autores
Chara, Osvaldo; Pafundo, Diego E.; Schwarzbaum, Pablo J.
Año de publicación
2009
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
In goldfish hepatocytes, hypotonic exposure leads to cell swelling, followed by a compensatory shrinkage termed RVD. It has been previously shown that ATP is accumulated in the extracellular medium of swollen cells in a non-linear fashion, and that extracellular ATP (ATPe) is an essential intermediate to trigger RVD. Thus, to understand how RVD proceeds in goldfish hepatocytes, we developed two mathematical models accounting for the experimental ATPe kinetics reported recently by Pafundo et al. in Am. J. Physiol. 294, R220–R233, 2008. Four different equations for ATPe fluxes were built to account for the release of ATP by lytic (JL) and nonlytic mechanisms (JNL), ATPe diffusion (JD), and ATPe consumption by ectonucleotidases (JV). Particular focus was given to JNL, defined as the product of a time function (JR) and a positive feedback mechanism whereby ATPe amplifies JNL. Several JR functions (Constant, Step, Impulse, Gaussian, and Lognormal) were studied. Models were tested without (model 1) or with (model 2) diffusion of ATPe. Mathematical analysis allowed us to get a general expression for each of the models. Subsequently, by using model dependent fit (simulations) as well as model analysis at infinite time, we observed that: – use of JD does not lead to improvements of the models. – Constant and Step time functions are only applicable when JR = 0 (and thus, JNL = 0), so that the only source of ATPe would be JL, a result incompatible with experimental data. – use of impulse, Gaussian, and lognormal JRs in the models led to reasonable good fits to experimental data, with the lognormal function in model 1 providing the best option. Finally, the predictive nature of model 1 loaded with a lognormal JR was tested by simulating different putative in vivo scenarios where JV; and JNL; were varied over ample ranges.
Facultad de Ciencias Exactas
Instituto de Física de Líquidos y Sistemas Biológicos
Materia
Física
Extracellular ATP
Mathematical modeling
Simulations
Release of ATP
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by/4.0/
Repositorio
SEDICI (UNLP)
Institución
Universidad Nacional de La Plata
OAI Identificador
oai:sedici.unlp.edu.ar:10915/134047

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network_name_str SEDICI (UNLP)
spelling Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical ModelingChara, OsvaldoPafundo, Diego E.Schwarzbaum, Pablo J.FísicaExtracellular ATPMathematical modelingSimulationsRelease of ATPIn goldfish hepatocytes, hypotonic exposure leads to cell swelling, followed by a compensatory shrinkage termed RVD. It has been previously shown that ATP is accumulated in the extracellular medium of swollen cells in a non-linear fashion, and that extracellular ATP (ATPe) is an essential intermediate to trigger RVD. Thus, to understand how RVD proceeds in goldfish hepatocytes, we developed two mathematical models accounting for the experimental ATPe kinetics reported recently by Pafundo et al. in Am. J. Physiol. 294, R220–R233, 2008. Four different equations for ATPe fluxes were built to account for the release of ATP by lytic (J<sub>L</sub>) and nonlytic mechanisms (J<sub>NL</sub>), ATPe diffusion (J<sub>D</sub>), and ATPe consumption by ectonucleotidases (J<sub>V</sub>). Particular focus was given to J<sub>NL</sub>, defined as the product of a time function (J<sub>R</sub>) and a positive feedback mechanism whereby ATPe amplifies J<sub>NL</sub>. Several J<sub>R</sub> functions (Constant, Step, Impulse, Gaussian, and Lognormal) were studied. Models were tested without (model 1) or with (model 2) diffusion of ATPe. Mathematical analysis allowed us to get a general expression for each of the models. Subsequently, by using model dependent fit (simulations) as well as model analysis at infinite time, we observed that: – use of J<sub>D</sub> does not lead to improvements of the models. – Constant and Step time functions are only applicable when J<sub>R</sub> = 0 (and thus, J<sub>NL</sub> = 0), so that the only source of ATPe would be J<sub>L</sub>, a result incompatible with experimental data. – use of impulse, Gaussian, and lognormal J<sub>R</sub>s in the models led to reasonable good fits to experimental data, with the lognormal function in model 1 providing the best option. Finally, the predictive nature of model 1 loaded with a lognormal J<sub>R</sub> was tested by simulating different putative <i>in vivo</i> scenarios where J<sub>V</sub>; and J<sub>NL</sub>; were varied over ample ranges.Facultad de Ciencias ExactasInstituto de Física de Líquidos y Sistemas Biológicos2009-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionArticulohttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdf1025-1047http://sedici.unlp.edu.ar/handle/10915/134047enginfo:eu-repo/semantics/altIdentifier/issn/1522-9602info:eu-repo/semantics/altIdentifier/issn/0092-8240info:eu-repo/semantics/altIdentifier/doi/10.1007/s11538-008-9392-4info:eu-repo/semantics/altIdentifier/pmid/19263175info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by/4.0/Creative Commons Attribution 4.0 International (CC BY 4.0)reponame:SEDICI (UNLP)instname:Universidad Nacional de La Platainstacron:UNLP2025-10-15T11:23:47Zoai:sedici.unlp.edu.ar:10915/134047Institucionalhttp://sedici.unlp.edu.ar/Universidad públicaNo correspondehttp://sedici.unlp.edu.ar/oai/snrdalira@sedici.unlp.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:13292025-10-15 11:23:48.034SEDICI (UNLP) - Universidad Nacional de La Platafalse
dc.title.none.fl_str_mv Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling
title Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling
spellingShingle Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling
Chara, Osvaldo
Física
Extracellular ATP
Mathematical modeling
Simulations
Release of ATP
title_short Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling
title_full Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling
title_fullStr Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling
title_full_unstemmed Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling
title_sort Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling
dc.creator.none.fl_str_mv Chara, Osvaldo
Pafundo, Diego E.
Schwarzbaum, Pablo J.
author Chara, Osvaldo
author_facet Chara, Osvaldo
Pafundo, Diego E.
Schwarzbaum, Pablo J.
author_role author
author2 Pafundo, Diego E.
Schwarzbaum, Pablo J.
author2_role author
author
dc.subject.none.fl_str_mv Física
Extracellular ATP
Mathematical modeling
Simulations
Release of ATP
topic Física
Extracellular ATP
Mathematical modeling
Simulations
Release of ATP
dc.description.none.fl_txt_mv In goldfish hepatocytes, hypotonic exposure leads to cell swelling, followed by a compensatory shrinkage termed RVD. It has been previously shown that ATP is accumulated in the extracellular medium of swollen cells in a non-linear fashion, and that extracellular ATP (ATPe) is an essential intermediate to trigger RVD. Thus, to understand how RVD proceeds in goldfish hepatocytes, we developed two mathematical models accounting for the experimental ATPe kinetics reported recently by Pafundo et al. in Am. J. Physiol. 294, R220–R233, 2008. Four different equations for ATPe fluxes were built to account for the release of ATP by lytic (J<sub>L</sub>) and nonlytic mechanisms (J<sub>NL</sub>), ATPe diffusion (J<sub>D</sub>), and ATPe consumption by ectonucleotidases (J<sub>V</sub>). Particular focus was given to J<sub>NL</sub>, defined as the product of a time function (J<sub>R</sub>) and a positive feedback mechanism whereby ATPe amplifies J<sub>NL</sub>. Several J<sub>R</sub> functions (Constant, Step, Impulse, Gaussian, and Lognormal) were studied. Models were tested without (model 1) or with (model 2) diffusion of ATPe. Mathematical analysis allowed us to get a general expression for each of the models. Subsequently, by using model dependent fit (simulations) as well as model analysis at infinite time, we observed that: – use of J<sub>D</sub> does not lead to improvements of the models. – Constant and Step time functions are only applicable when J<sub>R</sub> = 0 (and thus, J<sub>NL</sub> = 0), so that the only source of ATPe would be J<sub>L</sub>, a result incompatible with experimental data. – use of impulse, Gaussian, and lognormal J<sub>R</sub>s in the models led to reasonable good fits to experimental data, with the lognormal function in model 1 providing the best option. Finally, the predictive nature of model 1 loaded with a lognormal J<sub>R</sub> was tested by simulating different putative <i>in vivo</i> scenarios where J<sub>V</sub>; and J<sub>NL</sub>; were varied over ample ranges.
Facultad de Ciencias Exactas
Instituto de Física de Líquidos y Sistemas Biológicos
description In goldfish hepatocytes, hypotonic exposure leads to cell swelling, followed by a compensatory shrinkage termed RVD. It has been previously shown that ATP is accumulated in the extracellular medium of swollen cells in a non-linear fashion, and that extracellular ATP (ATPe) is an essential intermediate to trigger RVD. Thus, to understand how RVD proceeds in goldfish hepatocytes, we developed two mathematical models accounting for the experimental ATPe kinetics reported recently by Pafundo et al. in Am. J. Physiol. 294, R220–R233, 2008. Four different equations for ATPe fluxes were built to account for the release of ATP by lytic (J<sub>L</sub>) and nonlytic mechanisms (J<sub>NL</sub>), ATPe diffusion (J<sub>D</sub>), and ATPe consumption by ectonucleotidases (J<sub>V</sub>). Particular focus was given to J<sub>NL</sub>, defined as the product of a time function (J<sub>R</sub>) and a positive feedback mechanism whereby ATPe amplifies J<sub>NL</sub>. Several J<sub>R</sub> functions (Constant, Step, Impulse, Gaussian, and Lognormal) were studied. Models were tested without (model 1) or with (model 2) diffusion of ATPe. Mathematical analysis allowed us to get a general expression for each of the models. Subsequently, by using model dependent fit (simulations) as well as model analysis at infinite time, we observed that: – use of J<sub>D</sub> does not lead to improvements of the models. – Constant and Step time functions are only applicable when J<sub>R</sub> = 0 (and thus, J<sub>NL</sub> = 0), so that the only source of ATPe would be J<sub>L</sub>, a result incompatible with experimental data. – use of impulse, Gaussian, and lognormal J<sub>R</sub>s in the models led to reasonable good fits to experimental data, with the lognormal function in model 1 providing the best option. Finally, the predictive nature of model 1 loaded with a lognormal J<sub>R</sub> was tested by simulating different putative <i>in vivo</i> scenarios where J<sub>V</sub>; and J<sub>NL</sub>; were varied over ample ranges.
publishDate 2009
dc.date.none.fl_str_mv 2009-07
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info:eu-repo/semantics/altIdentifier/doi/10.1007/s11538-008-9392-4
info:eu-repo/semantics/altIdentifier/pmid/19263175
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by/4.0/
Creative Commons Attribution 4.0 International (CC BY 4.0)
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rights_invalid_str_mv http://creativecommons.org/licenses/by/4.0/
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