Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling
- Autores
- Chara, Osvaldo; Pafundo, Diego E.; Schwarzbaum, Pablo J.
- Año de publicación
- 2009
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- In goldfish hepatocytes, hypotonic exposure leads to cell swelling, followed by a compensatory shrinkage termed RVD. It has been previously shown that ATP is accumulated in the extracellular medium of swollen cells in a non-linear fashion, and that extracellular ATP (ATPe) is an essential intermediate to trigger RVD. Thus, to understand how RVD proceeds in goldfish hepatocytes, we developed two mathematical models accounting for the experimental ATPe kinetics reported recently by Pafundo et al. in Am. J. Physiol. 294, R220–R233, 2008. Four different equations for ATPe fluxes were built to account for the release of ATP by lytic (JL) and nonlytic mechanisms (JNL), ATPe diffusion (JD), and ATPe consumption by ectonucleotidases (JV). Particular focus was given to JNL, defined as the product of a time function (JR) and a positive feedback mechanism whereby ATPe amplifies JNL. Several JR functions (Constant, Step, Impulse, Gaussian, and Lognormal) were studied. Models were tested without (model 1) or with (model 2) diffusion of ATPe. Mathematical analysis allowed us to get a general expression for each of the models. Subsequently, by using model dependent fit (simulations) as well as model analysis at infinite time, we observed that: – use of JD does not lead to improvements of the models. – Constant and Step time functions are only applicable when JR = 0 (and thus, JNL = 0), so that the only source of ATPe would be JL, a result incompatible with experimental data. – use of impulse, Gaussian, and lognormal JRs in the models led to reasonable good fits to experimental data, with the lognormal function in model 1 providing the best option. Finally, the predictive nature of model 1 loaded with a lognormal JR was tested by simulating different putative in vivo scenarios where JV; and JNL; were varied over ample ranges.
Facultad de Ciencias Exactas
Instituto de Física de Líquidos y Sistemas Biológicos - Materia
-
Física
Extracellular ATP
Mathematical modeling
Simulations
Release of ATP - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- http://creativecommons.org/licenses/by/4.0/
- Repositorio
- Institución
- Universidad Nacional de La Plata
- OAI Identificador
- oai:sedici.unlp.edu.ar:10915/134047
Ver los metadatos del registro completo
id |
SEDICI_efff858b362db32cb02a5710e9d0fc1b |
---|---|
oai_identifier_str |
oai:sedici.unlp.edu.ar:10915/134047 |
network_acronym_str |
SEDICI |
repository_id_str |
1329 |
network_name_str |
SEDICI (UNLP) |
spelling |
Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical ModelingChara, OsvaldoPafundo, Diego E.Schwarzbaum, Pablo J.FísicaExtracellular ATPMathematical modelingSimulationsRelease of ATPIn goldfish hepatocytes, hypotonic exposure leads to cell swelling, followed by a compensatory shrinkage termed RVD. It has been previously shown that ATP is accumulated in the extracellular medium of swollen cells in a non-linear fashion, and that extracellular ATP (ATPe) is an essential intermediate to trigger RVD. Thus, to understand how RVD proceeds in goldfish hepatocytes, we developed two mathematical models accounting for the experimental ATPe kinetics reported recently by Pafundo et al. in Am. J. Physiol. 294, R220–R233, 2008. Four different equations for ATPe fluxes were built to account for the release of ATP by lytic (J<sub>L</sub>) and nonlytic mechanisms (J<sub>NL</sub>), ATPe diffusion (J<sub>D</sub>), and ATPe consumption by ectonucleotidases (J<sub>V</sub>). Particular focus was given to J<sub>NL</sub>, defined as the product of a time function (J<sub>R</sub>) and a positive feedback mechanism whereby ATPe amplifies J<sub>NL</sub>. Several J<sub>R</sub> functions (Constant, Step, Impulse, Gaussian, and Lognormal) were studied. Models were tested without (model 1) or with (model 2) diffusion of ATPe. Mathematical analysis allowed us to get a general expression for each of the models. Subsequently, by using model dependent fit (simulations) as well as model analysis at infinite time, we observed that: – use of J<sub>D</sub> does not lead to improvements of the models. – Constant and Step time functions are only applicable when J<sub>R</sub> = 0 (and thus, J<sub>NL</sub> = 0), so that the only source of ATPe would be J<sub>L</sub>, a result incompatible with experimental data. – use of impulse, Gaussian, and lognormal J<sub>R</sub>s in the models led to reasonable good fits to experimental data, with the lognormal function in model 1 providing the best option. Finally, the predictive nature of model 1 loaded with a lognormal J<sub>R</sub> was tested by simulating different putative <i>in vivo</i> scenarios where J<sub>V</sub>; and J<sub>NL</sub>; were varied over ample ranges.Facultad de Ciencias ExactasInstituto de Física de Líquidos y Sistemas Biológicos2009-07info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionArticulohttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdf1025-1047http://sedici.unlp.edu.ar/handle/10915/134047enginfo:eu-repo/semantics/altIdentifier/issn/1522-9602info:eu-repo/semantics/altIdentifier/issn/0092-8240info:eu-repo/semantics/altIdentifier/doi/10.1007/s11538-008-9392-4info:eu-repo/semantics/altIdentifier/pmid/19263175info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by/4.0/Creative Commons Attribution 4.0 International (CC BY 4.0)reponame:SEDICI (UNLP)instname:Universidad Nacional de La Platainstacron:UNLP2025-10-15T11:23:47Zoai:sedici.unlp.edu.ar:10915/134047Institucionalhttp://sedici.unlp.edu.ar/Universidad públicaNo correspondehttp://sedici.unlp.edu.ar/oai/snrdalira@sedici.unlp.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:13292025-10-15 11:23:48.034SEDICI (UNLP) - Universidad Nacional de La Platafalse |
dc.title.none.fl_str_mv |
Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling |
title |
Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling |
spellingShingle |
Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling Chara, Osvaldo Física Extracellular ATP Mathematical modeling Simulations Release of ATP |
title_short |
Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling |
title_full |
Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling |
title_fullStr |
Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling |
title_full_unstemmed |
Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling |
title_sort |
Kinetics of Extracellular ATP from Goldfish Hepatocytes: A Lesson from Mathematical Modeling |
dc.creator.none.fl_str_mv |
Chara, Osvaldo Pafundo, Diego E. Schwarzbaum, Pablo J. |
author |
Chara, Osvaldo |
author_facet |
Chara, Osvaldo Pafundo, Diego E. Schwarzbaum, Pablo J. |
author_role |
author |
author2 |
Pafundo, Diego E. Schwarzbaum, Pablo J. |
author2_role |
author author |
dc.subject.none.fl_str_mv |
Física Extracellular ATP Mathematical modeling Simulations Release of ATP |
topic |
Física Extracellular ATP Mathematical modeling Simulations Release of ATP |
dc.description.none.fl_txt_mv |
In goldfish hepatocytes, hypotonic exposure leads to cell swelling, followed by a compensatory shrinkage termed RVD. It has been previously shown that ATP is accumulated in the extracellular medium of swollen cells in a non-linear fashion, and that extracellular ATP (ATPe) is an essential intermediate to trigger RVD. Thus, to understand how RVD proceeds in goldfish hepatocytes, we developed two mathematical models accounting for the experimental ATPe kinetics reported recently by Pafundo et al. in Am. J. Physiol. 294, R220–R233, 2008. Four different equations for ATPe fluxes were built to account for the release of ATP by lytic (J<sub>L</sub>) and nonlytic mechanisms (J<sub>NL</sub>), ATPe diffusion (J<sub>D</sub>), and ATPe consumption by ectonucleotidases (J<sub>V</sub>). Particular focus was given to J<sub>NL</sub>, defined as the product of a time function (J<sub>R</sub>) and a positive feedback mechanism whereby ATPe amplifies J<sub>NL</sub>. Several J<sub>R</sub> functions (Constant, Step, Impulse, Gaussian, and Lognormal) were studied. Models were tested without (model 1) or with (model 2) diffusion of ATPe. Mathematical analysis allowed us to get a general expression for each of the models. Subsequently, by using model dependent fit (simulations) as well as model analysis at infinite time, we observed that: – use of J<sub>D</sub> does not lead to improvements of the models. – Constant and Step time functions are only applicable when J<sub>R</sub> = 0 (and thus, J<sub>NL</sub> = 0), so that the only source of ATPe would be J<sub>L</sub>, a result incompatible with experimental data. – use of impulse, Gaussian, and lognormal J<sub>R</sub>s in the models led to reasonable good fits to experimental data, with the lognormal function in model 1 providing the best option. Finally, the predictive nature of model 1 loaded with a lognormal J<sub>R</sub> was tested by simulating different putative <i>in vivo</i> scenarios where J<sub>V</sub>; and J<sub>NL</sub>; were varied over ample ranges. Facultad de Ciencias Exactas Instituto de Física de Líquidos y Sistemas Biológicos |
description |
In goldfish hepatocytes, hypotonic exposure leads to cell swelling, followed by a compensatory shrinkage termed RVD. It has been previously shown that ATP is accumulated in the extracellular medium of swollen cells in a non-linear fashion, and that extracellular ATP (ATPe) is an essential intermediate to trigger RVD. Thus, to understand how RVD proceeds in goldfish hepatocytes, we developed two mathematical models accounting for the experimental ATPe kinetics reported recently by Pafundo et al. in Am. J. Physiol. 294, R220–R233, 2008. Four different equations for ATPe fluxes were built to account for the release of ATP by lytic (J<sub>L</sub>) and nonlytic mechanisms (J<sub>NL</sub>), ATPe diffusion (J<sub>D</sub>), and ATPe consumption by ectonucleotidases (J<sub>V</sub>). Particular focus was given to J<sub>NL</sub>, defined as the product of a time function (J<sub>R</sub>) and a positive feedback mechanism whereby ATPe amplifies J<sub>NL</sub>. Several J<sub>R</sub> functions (Constant, Step, Impulse, Gaussian, and Lognormal) were studied. Models were tested without (model 1) or with (model 2) diffusion of ATPe. Mathematical analysis allowed us to get a general expression for each of the models. Subsequently, by using model dependent fit (simulations) as well as model analysis at infinite time, we observed that: – use of J<sub>D</sub> does not lead to improvements of the models. – Constant and Step time functions are only applicable when J<sub>R</sub> = 0 (and thus, J<sub>NL</sub> = 0), so that the only source of ATPe would be J<sub>L</sub>, a result incompatible with experimental data. – use of impulse, Gaussian, and lognormal J<sub>R</sub>s in the models led to reasonable good fits to experimental data, with the lognormal function in model 1 providing the best option. Finally, the predictive nature of model 1 loaded with a lognormal J<sub>R</sub> was tested by simulating different putative <i>in vivo</i> scenarios where J<sub>V</sub>; and J<sub>NL</sub>; were varied over ample ranges. |
publishDate |
2009 |
dc.date.none.fl_str_mv |
2009-07 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion Articulo http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://sedici.unlp.edu.ar/handle/10915/134047 |
url |
http://sedici.unlp.edu.ar/handle/10915/134047 |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/issn/1522-9602 info:eu-repo/semantics/altIdentifier/issn/0092-8240 info:eu-repo/semantics/altIdentifier/doi/10.1007/s11538-008-9392-4 info:eu-repo/semantics/altIdentifier/pmid/19263175 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by/4.0/ Creative Commons Attribution 4.0 International (CC BY 4.0) |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
http://creativecommons.org/licenses/by/4.0/ Creative Commons Attribution 4.0 International (CC BY 4.0) |
dc.format.none.fl_str_mv |
application/pdf 1025-1047 |
dc.source.none.fl_str_mv |
reponame:SEDICI (UNLP) instname:Universidad Nacional de La Plata instacron:UNLP |
reponame_str |
SEDICI (UNLP) |
collection |
SEDICI (UNLP) |
instname_str |
Universidad Nacional de La Plata |
instacron_str |
UNLP |
institution |
UNLP |
repository.name.fl_str_mv |
SEDICI (UNLP) - Universidad Nacional de La Plata |
repository.mail.fl_str_mv |
alira@sedici.unlp.edu.ar |
_version_ |
1846064292358520832 |
score |
13.22299 |