Nestedness across biological scales

Autores
Cantor, Mauricio; Pires, Mathias M.; Marquitti, Flavia M. D.; Raimundo, Rafael L. G.; Sebastián González, Esther; Coltri, Patricia P.; Pérez, Sergio Iván; Barneche, Diego R.; Brandt, Débora Y. C.; Nunes, Kelly; Daura Jorge, Fábio G.; Floeter, Sergio R.; Guimarães Jr., Paulo R.
Año de publicación
2017
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Biological networks pervade nature. They describe systems throughout all levels of biological organization, from molecules regulating metabolism to species interactions that shape ecosystem dynamics. The network thinking revealed recurrent organizational patterns in complex biological systems, such as the formation of semi-independent groups of connected elements (modularity) and non-random distributions of interactions among elements. Other structural patterns, such as nestedness, have been primarily assessed in ecological networks formed by two non-overlapping sets of elements; information on its occurrence on other levels of organization is lacking. Nestedness occurs when interactions of less connected elements form proper subsets of the interactions of more connected elements. Only recently these properties began to be appreciated in one-mode networks (where all elements can interact) which describe a much wider variety of biological phenomena. Here, we compute nestedness in a diverse collection of one-mode networked systems from six different levels of biological organization depicting gene and protein interactions, complex phenotypes, animal societies, metapopulations, food webs and vertebrate metacommunities. Our findings suggest that nestedness emerge independently of interaction type or biological scale and reveal that disparate systems can share nested organization features characterized by inclusive subsets of interacting elements with decreasing connectedness. We primarily explore the implications of a nested structure for each of these studied systems, then theorize on how nested networks are assembled. We hypothesize that nestedness emerges across scales due to processes that, although system-dependent, may share a general.
Facultad de Ciencias Naturales y Museo
Materia
Ciencias Naturales
Ciencias Exactas
networks
food webs
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by/4.0/
Repositorio
SEDICI (UNLP)
Institución
Universidad Nacional de La Plata
OAI Identificador
oai:sedici.unlp.edu.ar:10915/87366

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repository_id_str 1329
network_name_str SEDICI (UNLP)
spelling Nestedness across biological scalesCantor, MauricioPires, Mathias M.Marquitti, Flavia M. D.Raimundo, Rafael L. G.Sebastián González, EstherColtri, Patricia P.Pérez, Sergio IvánBarneche, Diego R.Brandt, Débora Y. C.Nunes, KellyDaura Jorge, Fábio G.Floeter, Sergio R.Guimarães Jr., Paulo R.Ciencias NaturalesCiencias Exactasnetworksfood websBiological networks pervade nature. They describe systems throughout all levels of biological organization, from molecules regulating metabolism to species interactions that shape ecosystem dynamics. The network thinking revealed recurrent organizational patterns in complex biological systems, such as the formation of semi-independent groups of connected elements (modularity) and non-random distributions of interactions among elements. Other structural patterns, such as nestedness, have been primarily assessed in ecological networks formed by two non-overlapping sets of elements; information on its occurrence on other levels of organization is lacking. Nestedness occurs when interactions of less connected elements form proper subsets of the interactions of more connected elements. Only recently these properties began to be appreciated in one-mode networks (where all elements can interact) which describe a much wider variety of biological phenomena. Here, we compute nestedness in a diverse collection of one-mode networked systems from six different levels of biological organization depicting gene and protein interactions, complex phenotypes, animal societies, metapopulations, food webs and vertebrate metacommunities. Our findings suggest that nestedness emerge independently of interaction type or biological scale and reveal that disparate systems can share nested organization features characterized by inclusive subsets of interacting elements with decreasing connectedness. We primarily explore the implications of a nested structure for each of these studied systems, then theorize on how nested networks are assembled. We hypothesize that nestedness emerges across scales due to processes that, although system-dependent, may share a general.Facultad de Ciencias Naturales y Museo2017info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionArticulohttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://sedici.unlp.edu.ar/handle/10915/87366enginfo:eu-repo/semantics/altIdentifier/issn/1932-6203info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0171691info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by/4.0/Creative Commons Attribution 4.0 International (CC BY 4.0)reponame:SEDICI (UNLP)instname:Universidad Nacional de La Platainstacron:UNLP2025-11-26T09:55:14Zoai:sedici.unlp.edu.ar:10915/87366Institucionalhttp://sedici.unlp.edu.ar/Universidad públicaNo correspondehttp://sedici.unlp.edu.ar/oai/snrdalira@sedici.unlp.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:13292025-11-26 09:55:14.669SEDICI (UNLP) - Universidad Nacional de La Platafalse
dc.title.none.fl_str_mv Nestedness across biological scales
title Nestedness across biological scales
spellingShingle Nestedness across biological scales
Cantor, Mauricio
Ciencias Naturales
Ciencias Exactas
networks
food webs
title_short Nestedness across biological scales
title_full Nestedness across biological scales
title_fullStr Nestedness across biological scales
title_full_unstemmed Nestedness across biological scales
title_sort Nestedness across biological scales
dc.creator.none.fl_str_mv Cantor, Mauricio
Pires, Mathias M.
Marquitti, Flavia M. D.
Raimundo, Rafael L. G.
Sebastián González, Esther
Coltri, Patricia P.
Pérez, Sergio Iván
Barneche, Diego R.
Brandt, Débora Y. C.
Nunes, Kelly
Daura Jorge, Fábio G.
Floeter, Sergio R.
Guimarães Jr., Paulo R.
author Cantor, Mauricio
author_facet Cantor, Mauricio
Pires, Mathias M.
Marquitti, Flavia M. D.
Raimundo, Rafael L. G.
Sebastián González, Esther
Coltri, Patricia P.
Pérez, Sergio Iván
Barneche, Diego R.
Brandt, Débora Y. C.
Nunes, Kelly
Daura Jorge, Fábio G.
Floeter, Sergio R.
Guimarães Jr., Paulo R.
author_role author
author2 Pires, Mathias M.
Marquitti, Flavia M. D.
Raimundo, Rafael L. G.
Sebastián González, Esther
Coltri, Patricia P.
Pérez, Sergio Iván
Barneche, Diego R.
Brandt, Débora Y. C.
Nunes, Kelly
Daura Jorge, Fábio G.
Floeter, Sergio R.
Guimarães Jr., Paulo R.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Ciencias Naturales
Ciencias Exactas
networks
food webs
topic Ciencias Naturales
Ciencias Exactas
networks
food webs
dc.description.none.fl_txt_mv Biological networks pervade nature. They describe systems throughout all levels of biological organization, from molecules regulating metabolism to species interactions that shape ecosystem dynamics. The network thinking revealed recurrent organizational patterns in complex biological systems, such as the formation of semi-independent groups of connected elements (modularity) and non-random distributions of interactions among elements. Other structural patterns, such as nestedness, have been primarily assessed in ecological networks formed by two non-overlapping sets of elements; information on its occurrence on other levels of organization is lacking. Nestedness occurs when interactions of less connected elements form proper subsets of the interactions of more connected elements. Only recently these properties began to be appreciated in one-mode networks (where all elements can interact) which describe a much wider variety of biological phenomena. Here, we compute nestedness in a diverse collection of one-mode networked systems from six different levels of biological organization depicting gene and protein interactions, complex phenotypes, animal societies, metapopulations, food webs and vertebrate metacommunities. Our findings suggest that nestedness emerge independently of interaction type or biological scale and reveal that disparate systems can share nested organization features characterized by inclusive subsets of interacting elements with decreasing connectedness. We primarily explore the implications of a nested structure for each of these studied systems, then theorize on how nested networks are assembled. We hypothesize that nestedness emerges across scales due to processes that, although system-dependent, may share a general.
Facultad de Ciencias Naturales y Museo
description Biological networks pervade nature. They describe systems throughout all levels of biological organization, from molecules regulating metabolism to species interactions that shape ecosystem dynamics. The network thinking revealed recurrent organizational patterns in complex biological systems, such as the formation of semi-independent groups of connected elements (modularity) and non-random distributions of interactions among elements. Other structural patterns, such as nestedness, have been primarily assessed in ecological networks formed by two non-overlapping sets of elements; information on its occurrence on other levels of organization is lacking. Nestedness occurs when interactions of less connected elements form proper subsets of the interactions of more connected elements. Only recently these properties began to be appreciated in one-mode networks (where all elements can interact) which describe a much wider variety of biological phenomena. Here, we compute nestedness in a diverse collection of one-mode networked systems from six different levels of biological organization depicting gene and protein interactions, complex phenotypes, animal societies, metapopulations, food webs and vertebrate metacommunities. Our findings suggest that nestedness emerge independently of interaction type or biological scale and reveal that disparate systems can share nested organization features characterized by inclusive subsets of interacting elements with decreasing connectedness. We primarily explore the implications of a nested structure for each of these studied systems, then theorize on how nested networks are assembled. We hypothesize that nestedness emerges across scales due to processes that, although system-dependent, may share a general.
publishDate 2017
dc.date.none.fl_str_mv 2017
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Articulo
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dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/issn/1932-6203
info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0171691
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by/4.0/
Creative Commons Attribution 4.0 International (CC BY 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by/4.0/
Creative Commons Attribution 4.0 International (CC BY 4.0)
dc.format.none.fl_str_mv application/pdf
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