BioSmalltalk: a pure object system and library for bioinformatics

Autores
Morales Durand, Hernán F.; Giovambattista, Guillermo
Año de publicación
2013
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
We have developed BioSmalltalk, a new environment system for pure object-oriented bioinformatics programming. Adaptive end-user programming systems tend to become more important for discovering biological knowledge, as is demonstrated by the emergence of open-source programming toolkits for bioinformatics in the past years. Our software is intended to bridge the gap between bioscientists and rapid software prototyping while preserving the possibility of scaling to whole-system biology applications. BioSmalltalk performs better in terms of execution time and memory usage than Biopython and BioPerl for some classical situations.
Availability: BioSmalltalk is cross-platform and freely available (MIT license) through the Google Project Hosting at http://code.google.com/p/biosmalltalk Supplementary information: Supplementary data are available at Bioinformatics online.
Instituto de Genética Veterinaria
Materia
Informática
Biología
Bioinformatics programming
Open-source programming toolkits
Software
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
SEDICI (UNLP)
Institución
Universidad Nacional de La Plata
OAI Identificador
oai:sedici.unlp.edu.ar:10915/85577
Acceder
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oai_identifier_str oai:sedici.unlp.edu.ar:10915/85577
network_acronym_str SEDICI
repository_id_str 1329
network_name_str SEDICI (UNLP)
spelling BioSmalltalk: a pure object system and library for bioinformaticsMorales Durand, Hernán F.Giovambattista, GuillermoInformáticaBiologíaBioinformatics programmingOpen-source programming toolkitsSoftwareWe have developed BioSmalltalk, a new environment system for pure object-oriented bioinformatics programming. Adaptive end-user programming systems tend to become more important for discovering biological knowledge, as is demonstrated by the emergence of open-source programming toolkits for bioinformatics in the past years. Our software is intended to bridge the gap between bioscientists and rapid software prototyping while preserving the possibility of scaling to whole-system biology applications. BioSmalltalk performs better in terms of execution time and memory usage than Biopython and BioPerl for some classical situations.<b>Availability:</b> BioSmalltalk is cross-platform and freely available (MIT license) through the Google Project Hosting at http://code.google.com/p/biosmalltalk <b>Supplementary information:</b> Supplementary data are available at <i>Bioinformatics</i> online.Instituto de Genética Veterinaria2013-07-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionArticulohttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdf2355-2356http://sedici.unlp.edu.ar/handle/10915/85577enginfo:eu-repo/semantics/altIdentifier/issn/1367-4803info:eu-repo/semantics/altIdentifier/doi/10.1093/bioinformatics/btt398info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)reponame:SEDICI (UNLP)instname:Universidad Nacional de La Platainstacron:UNLP2025-09-29T11:16:29Zoai:sedici.unlp.edu.ar:10915/85577Institucionalhttp://sedici.unlp.edu.ar/Universidad públicaNo correspondehttp://sedici.unlp.edu.ar/oai/snrdalira@sedici.unlp.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:13292025-09-29 11:16:30.181SEDICI (UNLP) - Universidad Nacional de La Platafalse
dc.title.none.fl_str_mv BioSmalltalk: a pure object system and library for bioinformatics
title BioSmalltalk: a pure object system and library for bioinformatics
spellingShingle BioSmalltalk: a pure object system and library for bioinformatics
Morales Durand, Hernán F.
Informática
Biología
Bioinformatics programming
Open-source programming toolkits
Software
title_short BioSmalltalk: a pure object system and library for bioinformatics
title_full BioSmalltalk: a pure object system and library for bioinformatics
title_fullStr BioSmalltalk: a pure object system and library for bioinformatics
title_full_unstemmed BioSmalltalk: a pure object system and library for bioinformatics
title_sort BioSmalltalk: a pure object system and library for bioinformatics
dc.creator.none.fl_str_mv Morales Durand, Hernán F.
Giovambattista, Guillermo
author Morales Durand, Hernán F.
author_facet Morales Durand, Hernán F.
Giovambattista, Guillermo
author_role author
author2 Giovambattista, Guillermo
author2_role author
dc.subject.none.fl_str_mv Informática
Biología
Bioinformatics programming
Open-source programming toolkits
Software
topic Informática
Biología
Bioinformatics programming
Open-source programming toolkits
Software
dc.description.none.fl_txt_mv We have developed BioSmalltalk, a new environment system for pure object-oriented bioinformatics programming. Adaptive end-user programming systems tend to become more important for discovering biological knowledge, as is demonstrated by the emergence of open-source programming toolkits for bioinformatics in the past years. Our software is intended to bridge the gap between bioscientists and rapid software prototyping while preserving the possibility of scaling to whole-system biology applications. BioSmalltalk performs better in terms of execution time and memory usage than Biopython and BioPerl for some classical situations.
<b>Availability:</b> BioSmalltalk is cross-platform and freely available (MIT license) through the Google Project Hosting at http://code.google.com/p/biosmalltalk <b>Supplementary information:</b> Supplementary data are available at <i>Bioinformatics</i> online.
Instituto de Genética Veterinaria
description We have developed BioSmalltalk, a new environment system for pure object-oriented bioinformatics programming. Adaptive end-user programming systems tend to become more important for discovering biological knowledge, as is demonstrated by the emergence of open-source programming toolkits for bioinformatics in the past years. Our software is intended to bridge the gap between bioscientists and rapid software prototyping while preserving the possibility of scaling to whole-system biology applications. BioSmalltalk performs better in terms of execution time and memory usage than Biopython and BioPerl for some classical situations.
publishDate 2013
dc.date.none.fl_str_mv 2013-07-09
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
Articulo
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://sedici.unlp.edu.ar/handle/10915/85577
url http://sedici.unlp.edu.ar/handle/10915/85577
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/issn/1367-4803
info:eu-repo/semantics/altIdentifier/doi/10.1093/bioinformatics/btt398
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
2355-2356
dc.source.none.fl_str_mv reponame:SEDICI (UNLP)
instname:Universidad Nacional de La Plata
instacron:UNLP
reponame_str SEDICI (UNLP)
collection SEDICI (UNLP)
instname_str Universidad Nacional de La Plata
instacron_str UNLP
institution UNLP
repository.name.fl_str_mv SEDICI (UNLP) - Universidad Nacional de La Plata
repository.mail.fl_str_mv alira@sedici.unlp.edu.ar
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score 13.070432

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