Evidence of genetic diversity within Solanum Lycopersicum L. ‘Platense’ landrace and identification of various subpopulations

Autores
Cattáneo, Raúl Amado; McCarthy, Andrés N.; Feingold, Sergio Enrique
Año de publicación
2020
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Local varieties and landraces are traditional crops that have evolved over time through adaptation to their natural and cultural environment. They are presently regarded as a valuable genetic reservoir, given that most of the genetic diversity of domesticated species lies in these and other traditionally used varieties. The 'Platense' tomato landrace is adapted to the local soil and climate of the La Plata horticultural green belt, as a result of the gradual selection of a number of tomato cultivars that were introduced in Argentina towards the end of the nineteenth century following the massive immigration flow, mainly from Europe. In the present study we have evaluated the genetic identity and diversity of this landrace and all its subpopulations registered at the Germplasm Bank of the “La Consulta” Agricultural Experimental Station of INTA. The molecular analysis, based on 14 polymorphic microsatellite markers, presented a mean number of alleles per locus of 2.56 with an average polymorphic information content of 0.28. The genetic information obtained allowed the assessment of the genetic variation between and within entries, as well as the identification of all revealed genotypes with an exclusion power of over 99.99%. Likewise, the diversity was evaluated for the whole landrace, as well as for every subpopulation, establishing notably high diversity values both for the complete landrace and a number of its subpopulations. This information is highly useful in the description of the 'Platense' landrace variability and constitutes a solid approach for the genetic characterization of the available material at Germplasm Bank accessions, as well as for other eventual members of this landrace presently in use by local horticulturists.
Centro Regional de Estudios Genómicos
Comisión de Investigaciones Científicas de la provincia de Buenos Aires
Materia
Biología
Ciencias Agrarias
Molecular markers
SSR
Genetic diversity
S. lycopersicon
Platense tomato landrace
Identity estimation
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
SEDICI (UNLP)
Institución
Universidad Nacional de La Plata
OAI Identificador
oai:sedici.unlp.edu.ar:10915/131441
Acceder
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repository_id_str 1329
network_name_str SEDICI (UNLP)
spelling Evidence of genetic diversity within Solanum Lycopersicum L. ‘Platense’ landrace and identification of various subpopulationsCattáneo, Raúl AmadoMcCarthy, Andrés N.Feingold, Sergio EnriqueBiologíaCiencias AgrariasMolecular markersSSRGenetic diversityS. lycopersiconPlatense tomato landraceIdentity estimationLocal varieties and landraces are traditional crops that have evolved over time through adaptation to their natural and cultural environment. They are presently regarded as a valuable genetic reservoir, given that most of the genetic diversity of domesticated species lies in these and other traditionally used varieties. The 'Platense' tomato landrace is adapted to the local soil and climate of the La Plata horticultural green belt, as a result of the gradual selection of a number of tomato cultivars that were introduced in Argentina towards the end of the nineteenth century following the massive immigration flow, mainly from Europe. In the present study we have evaluated the genetic identity and diversity of this landrace and all its subpopulations registered at the Germplasm Bank of the “La Consulta” Agricultural Experimental Station of INTA. The molecular analysis, based on 14 polymorphic microsatellite markers, presented a mean number of alleles per locus of 2.56 with an average polymorphic information content of 0.28. The genetic information obtained allowed the assessment of the genetic variation between and within entries, as well as the identification of all revealed genotypes with an exclusion power of over 99.99%. Likewise, the diversity was evaluated for the whole landrace, as well as for every subpopulation, establishing notably high diversity values both for the complete landrace and a number of its subpopulations. This information is highly useful in the description of the 'Platense' landrace variability and constitutes a solid approach for the genetic characterization of the available material at Germplasm Bank accessions, as well as for other eventual members of this landrace presently in use by local horticulturists.Centro Regional de Estudios GenómicosComisión de Investigaciones Científicas de la provincia de Buenos Aires2020info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionArticulohttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdf2057-2069http://sedici.unlp.edu.ar/handle/10915/131441enginfo:eu-repo/semantics/altIdentifier/issn/0925-9864info:eu-repo/semantics/altIdentifier/issn/1573-5109info:eu-repo/semantics/altIdentifier/doi/10.1007/s10722-020-00959-8info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)reponame:SEDICI (UNLP)instname:Universidad Nacional de La Platainstacron:UNLP2025-09-29T11:31:47Zoai:sedici.unlp.edu.ar:10915/131441Institucionalhttp://sedici.unlp.edu.ar/Universidad públicaNo correspondehttp://sedici.unlp.edu.ar/oai/snrdalira@sedici.unlp.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:13292025-09-29 11:31:47.439SEDICI (UNLP) - Universidad Nacional de La Platafalse
dc.title.none.fl_str_mv Evidence of genetic diversity within Solanum Lycopersicum L. ‘Platense’ landrace and identification of various subpopulations
title Evidence of genetic diversity within Solanum Lycopersicum L. ‘Platense’ landrace and identification of various subpopulations
spellingShingle Evidence of genetic diversity within Solanum Lycopersicum L. ‘Platense’ landrace and identification of various subpopulations
Cattáneo, Raúl Amado
Biología
Ciencias Agrarias
Molecular markers
SSR
Genetic diversity
S. lycopersicon
Platense tomato landrace
Identity estimation
title_short Evidence of genetic diversity within Solanum Lycopersicum L. ‘Platense’ landrace and identification of various subpopulations
title_full Evidence of genetic diversity within Solanum Lycopersicum L. ‘Platense’ landrace and identification of various subpopulations
title_fullStr Evidence of genetic diversity within Solanum Lycopersicum L. ‘Platense’ landrace and identification of various subpopulations
title_full_unstemmed Evidence of genetic diversity within Solanum Lycopersicum L. ‘Platense’ landrace and identification of various subpopulations
title_sort Evidence of genetic diversity within Solanum Lycopersicum L. ‘Platense’ landrace and identification of various subpopulations
dc.creator.none.fl_str_mv Cattáneo, Raúl Amado
McCarthy, Andrés N.
Feingold, Sergio Enrique
author Cattáneo, Raúl Amado
author_facet Cattáneo, Raúl Amado
McCarthy, Andrés N.
Feingold, Sergio Enrique
author_role author
author2 McCarthy, Andrés N.
Feingold, Sergio Enrique
author2_role author
author
dc.subject.none.fl_str_mv Biología
Ciencias Agrarias
Molecular markers
SSR
Genetic diversity
S. lycopersicon
Platense tomato landrace
Identity estimation
topic Biología
Ciencias Agrarias
Molecular markers
SSR
Genetic diversity
S. lycopersicon
Platense tomato landrace
Identity estimation
dc.description.none.fl_txt_mv Local varieties and landraces are traditional crops that have evolved over time through adaptation to their natural and cultural environment. They are presently regarded as a valuable genetic reservoir, given that most of the genetic diversity of domesticated species lies in these and other traditionally used varieties. The 'Platense' tomato landrace is adapted to the local soil and climate of the La Plata horticultural green belt, as a result of the gradual selection of a number of tomato cultivars that were introduced in Argentina towards the end of the nineteenth century following the massive immigration flow, mainly from Europe. In the present study we have evaluated the genetic identity and diversity of this landrace and all its subpopulations registered at the Germplasm Bank of the “La Consulta” Agricultural Experimental Station of INTA. The molecular analysis, based on 14 polymorphic microsatellite markers, presented a mean number of alleles per locus of 2.56 with an average polymorphic information content of 0.28. The genetic information obtained allowed the assessment of the genetic variation between and within entries, as well as the identification of all revealed genotypes with an exclusion power of over 99.99%. Likewise, the diversity was evaluated for the whole landrace, as well as for every subpopulation, establishing notably high diversity values both for the complete landrace and a number of its subpopulations. This information is highly useful in the description of the 'Platense' landrace variability and constitutes a solid approach for the genetic characterization of the available material at Germplasm Bank accessions, as well as for other eventual members of this landrace presently in use by local horticulturists.
Centro Regional de Estudios Genómicos
Comisión de Investigaciones Científicas de la provincia de Buenos Aires
description Local varieties and landraces are traditional crops that have evolved over time through adaptation to their natural and cultural environment. They are presently regarded as a valuable genetic reservoir, given that most of the genetic diversity of domesticated species lies in these and other traditionally used varieties. The 'Platense' tomato landrace is adapted to the local soil and climate of the La Plata horticultural green belt, as a result of the gradual selection of a number of tomato cultivars that were introduced in Argentina towards the end of the nineteenth century following the massive immigration flow, mainly from Europe. In the present study we have evaluated the genetic identity and diversity of this landrace and all its subpopulations registered at the Germplasm Bank of the “La Consulta” Agricultural Experimental Station of INTA. The molecular analysis, based on 14 polymorphic microsatellite markers, presented a mean number of alleles per locus of 2.56 with an average polymorphic information content of 0.28. The genetic information obtained allowed the assessment of the genetic variation between and within entries, as well as the identification of all revealed genotypes with an exclusion power of over 99.99%. Likewise, the diversity was evaluated for the whole landrace, as well as for every subpopulation, establishing notably high diversity values both for the complete landrace and a number of its subpopulations. This information is highly useful in the description of the 'Platense' landrace variability and constitutes a solid approach for the genetic characterization of the available material at Germplasm Bank accessions, as well as for other eventual members of this landrace presently in use by local horticulturists.
publishDate 2020
dc.date.none.fl_str_mv 2020
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
Articulo
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://sedici.unlp.edu.ar/handle/10915/131441
url http://sedici.unlp.edu.ar/handle/10915/131441
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/issn/0925-9864
info:eu-repo/semantics/altIdentifier/issn/1573-5109
info:eu-repo/semantics/altIdentifier/doi/10.1007/s10722-020-00959-8
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
2057-2069
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reponame_str SEDICI (UNLP)
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institution UNLP
repository.name.fl_str_mv SEDICI (UNLP) - Universidad Nacional de La Plata
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