Evolution of genome space occupation in ferns : linking genome diversity and species richness

Autores
Fujiwara, Tao; Liu, Hongmei; Meza-Torres, Esteban I.; Morero, Rita Ema; Vega, Álvaro José; Liang, Zhenlong; Ebihara, Atsushi; Leitch, Ilia J.; Schneider, Harald
Año de publicación
2023
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Fil: Fujiwara, Tao. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden. Center for Integrative Conservation; China.
Fil: Fujiwara, Tao. Tokyo Metropolitan University. Makino Herbarium; Japon.
Fil: Liu, Hongmei. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden; China.
Fil: Meza-Torres, Esteban I. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica del Nordeste; Argentina.
Fil: Meza-Torres, Esteban I. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentina.
Fil: Morero, Rita Ema. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto Multidiscipinario de Biología Vegetal; Argentina.
Fil: Vega, Álvaro José. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica del Nordeste; Argentina.
Fil: Vega, Álvaro José. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentina.
Fil: Liang, Zhenlong. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden. Center for Integrative Conservation; China.
Fil: Ebihara, Atsushi. National Museum of Nature and Sciences. Department of Botany; Japan.
Fil: Leitch, Ilia J. Royal Botanic Gardens; Reino Unido.
Fil: Schneider, Harald. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden. Center for Integrative Conservation; China.
Background and Aims: The dynamics of genome evolution caused by whole genome duplications and other processes are hypothesized to shape the diversification of plants and thus contribute to the astonishing variation in species richness among the main lineages of land plants. Ferns, the second most species-rich lineage of land plants, are highly suitable to test this hypothesis because of several unique features that distinguish fern genomes from those of seed plants. In this study, we tested the hypothesis that genome diversity and disparity shape fern species diversity by recording several parameters related to genome size and chromosome number. Methods: We conducted de novo measurement of DNA C-values across the fern phylogeny to reconstruct the phylogenetic history of the genome space occupation in ferns by integrating genomic parameters such as genome size, chromosome number and average DNA amount per chromosome into a time-scaled phylogenetic framework. Using phylogenetic generalized least square methods, we determined correlations between chromosome number and genome size, species diversity and evolutionary rates of their transformation. Key Results: The measurements of DNA C-values for 233 species more than doubled the taxon coverage from ~2.2 % in previous studies to 5.3 % of extant diversity. The dataset not only documented substantial differences in the accumulation of genomic diversity and disparity among the major lineages of ferns but also supported the predicted correlation between species diversity and the dynamics of genome evolution. Conclusions: Our results demonstrated substantial genome disparity among different groups of ferns and supported the prediction that alterations of reproductive modes alter trends of genome evolution. Finally, we recovered evidence for a close link between the dynamics of genome evolution and species diversity in ferns for the first time.
Fuente
Annals of Botany, 2023, vol. 131, no. 1, p. 59-70.
Materia
DNA C-values
genome evolution
genome size
macroevolution
polyploidy
pteridophytes
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-nd/2.5/ar/
Repositorio
Repositorio Institucional de la Universidad Nacional del Nordeste (UNNE)
Institución
Universidad Nacional del Nordeste
OAI Identificador
oai:repositorio.unne.edu.ar:123456789/58286

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network_acronym_str RIUNNE
repository_id_str 4871
network_name_str Repositorio Institucional de la Universidad Nacional del Nordeste (UNNE)
spelling Evolution of genome space occupation in ferns : linking genome diversity and species richnessFujiwara, TaoLiu, HongmeiMeza-Torres, Esteban I.Morero, Rita EmaVega, Álvaro JoséLiang, ZhenlongEbihara, AtsushiLeitch, Ilia J.Schneider, HaraldDNA C-valuesgenome evolutiongenome sizemacroevolutionpolyploidypteridophytesFil: Fujiwara, Tao. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden. Center for Integrative Conservation; China.Fil: Fujiwara, Tao. Tokyo Metropolitan University. Makino Herbarium; Japon.Fil: Liu, Hongmei. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden; China.Fil: Meza-Torres, Esteban I. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica del Nordeste; Argentina.Fil: Meza-Torres, Esteban I. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentina.Fil: Morero, Rita Ema. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto Multidiscipinario de Biología Vegetal; Argentina.Fil: Vega, Álvaro José. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica del Nordeste; Argentina.Fil: Vega, Álvaro José. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentina.Fil: Liang, Zhenlong. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden. Center for Integrative Conservation; China.Fil: Ebihara, Atsushi. National Museum of Nature and Sciences. Department of Botany; Japan.Fil: Leitch, Ilia J. Royal Botanic Gardens; Reino Unido.Fil: Schneider, Harald. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden. Center for Integrative Conservation; China.Background and Aims: The dynamics of genome evolution caused by whole genome duplications and other processes are hypothesized to shape the diversification of plants and thus contribute to the astonishing variation in species richness among the main lineages of land plants. Ferns, the second most species-rich lineage of land plants, are highly suitable to test this hypothesis because of several unique features that distinguish fern genomes from those of seed plants. In this study, we tested the hypothesis that genome diversity and disparity shape fern species diversity by recording several parameters related to genome size and chromosome number. Methods: We conducted de novo measurement of DNA C-values across the fern phylogeny to reconstruct the phylogenetic history of the genome space occupation in ferns by integrating genomic parameters such as genome size, chromosome number and average DNA amount per chromosome into a time-scaled phylogenetic framework. Using phylogenetic generalized least square methods, we determined correlations between chromosome number and genome size, species diversity and evolutionary rates of their transformation. Key Results: The measurements of DNA C-values for 233 species more than doubled the taxon coverage from ~2.2 % in previous studies to 5.3 % of extant diversity. The dataset not only documented substantial differences in the accumulation of genomic diversity and disparity among the major lineages of ferns but also supported the predicted correlation between species diversity and the dynamics of genome evolution. Conclusions: Our results demonstrated substantial genome disparity among different groups of ferns and supported the prediction that alterations of reproductive modes alter trends of genome evolution. Finally, we recovered evidence for a close link between the dynamics of genome evolution and species diversity in ferns for the first time.Oxford University Press2023-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfp. 59-70application/pdfFujiwara, Tao, et al., 2023. Evolution of genome space occupation in ferns : linking genome diversity and species richness. Annals of Botany. Oxford: Oxford University Press, vol. 131, no. 1, p. 59-70. E-ISSN 1095-8290. DOI https://doi.org/10.1093/aob/mcab0940305-7364http://repositorio.unne.edu.ar/handle/123456789/58286Annals of Botany, 2023, vol. 131, no. 1, p. 59-70.reponame:Repositorio Institucional de la Universidad Nacional del Nordeste (UNNE)instname:Universidad Nacional del Nordesteenghttps://doi.org/10.1093/aob/mcab094info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-nd/2.5/ar/Atribución-NoComercial-SinDerivadas 2.5 Argentina2025-09-29T14:29:18Zoai:repositorio.unne.edu.ar:123456789/58286instacron:UNNEInstitucionalhttp://repositorio.unne.edu.ar/Universidad públicaNo correspondehttp://repositorio.unne.edu.ar/oaiososa@bib.unne.edu.ar;sergio.alegria@unne.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:48712025-09-29 14:29:19.019Repositorio Institucional de la Universidad Nacional del Nordeste (UNNE) - Universidad Nacional del Nordestefalse
dc.title.none.fl_str_mv Evolution of genome space occupation in ferns : linking genome diversity and species richness
title Evolution of genome space occupation in ferns : linking genome diversity and species richness
spellingShingle Evolution of genome space occupation in ferns : linking genome diversity and species richness
Fujiwara, Tao
DNA C-values
genome evolution
genome size
macroevolution
polyploidy
pteridophytes
title_short Evolution of genome space occupation in ferns : linking genome diversity and species richness
title_full Evolution of genome space occupation in ferns : linking genome diversity and species richness
title_fullStr Evolution of genome space occupation in ferns : linking genome diversity and species richness
title_full_unstemmed Evolution of genome space occupation in ferns : linking genome diversity and species richness
title_sort Evolution of genome space occupation in ferns : linking genome diversity and species richness
dc.creator.none.fl_str_mv Fujiwara, Tao
Liu, Hongmei
Meza-Torres, Esteban I.
Morero, Rita Ema
Vega, Álvaro José
Liang, Zhenlong
Ebihara, Atsushi
Leitch, Ilia J.
Schneider, Harald
author Fujiwara, Tao
author_facet Fujiwara, Tao
Liu, Hongmei
Meza-Torres, Esteban I.
Morero, Rita Ema
Vega, Álvaro José
Liang, Zhenlong
Ebihara, Atsushi
Leitch, Ilia J.
Schneider, Harald
author_role author
author2 Liu, Hongmei
Meza-Torres, Esteban I.
Morero, Rita Ema
Vega, Álvaro José
Liang, Zhenlong
Ebihara, Atsushi
Leitch, Ilia J.
Schneider, Harald
author2_role author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv DNA C-values
genome evolution
genome size
macroevolution
polyploidy
pteridophytes
topic DNA C-values
genome evolution
genome size
macroevolution
polyploidy
pteridophytes
dc.description.none.fl_txt_mv Fil: Fujiwara, Tao. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden. Center for Integrative Conservation; China.
Fil: Fujiwara, Tao. Tokyo Metropolitan University. Makino Herbarium; Japon.
Fil: Liu, Hongmei. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden; China.
Fil: Meza-Torres, Esteban I. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica del Nordeste; Argentina.
Fil: Meza-Torres, Esteban I. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentina.
Fil: Morero, Rita Ema. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto Multidiscipinario de Biología Vegetal; Argentina.
Fil: Vega, Álvaro José. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica del Nordeste; Argentina.
Fil: Vega, Álvaro José. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentina.
Fil: Liang, Zhenlong. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden. Center for Integrative Conservation; China.
Fil: Ebihara, Atsushi. National Museum of Nature and Sciences. Department of Botany; Japan.
Fil: Leitch, Ilia J. Royal Botanic Gardens; Reino Unido.
Fil: Schneider, Harald. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden. Center for Integrative Conservation; China.
Background and Aims: The dynamics of genome evolution caused by whole genome duplications and other processes are hypothesized to shape the diversification of plants and thus contribute to the astonishing variation in species richness among the main lineages of land plants. Ferns, the second most species-rich lineage of land plants, are highly suitable to test this hypothesis because of several unique features that distinguish fern genomes from those of seed plants. In this study, we tested the hypothesis that genome diversity and disparity shape fern species diversity by recording several parameters related to genome size and chromosome number. Methods: We conducted de novo measurement of DNA C-values across the fern phylogeny to reconstruct the phylogenetic history of the genome space occupation in ferns by integrating genomic parameters such as genome size, chromosome number and average DNA amount per chromosome into a time-scaled phylogenetic framework. Using phylogenetic generalized least square methods, we determined correlations between chromosome number and genome size, species diversity and evolutionary rates of their transformation. Key Results: The measurements of DNA C-values for 233 species more than doubled the taxon coverage from ~2.2 % in previous studies to 5.3 % of extant diversity. The dataset not only documented substantial differences in the accumulation of genomic diversity and disparity among the major lineages of ferns but also supported the predicted correlation between species diversity and the dynamics of genome evolution. Conclusions: Our results demonstrated substantial genome disparity among different groups of ferns and supported the prediction that alterations of reproductive modes alter trends of genome evolution. Finally, we recovered evidence for a close link between the dynamics of genome evolution and species diversity in ferns for the first time.
description Fil: Fujiwara, Tao. Chinese Academy of Sciences. Xishuangbanna Tropical Botanical Garden. Center for Integrative Conservation; China.
publishDate 2023
dc.date.none.fl_str_mv 2023-01-01
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv Fujiwara, Tao, et al., 2023. Evolution of genome space occupation in ferns : linking genome diversity and species richness. Annals of Botany. Oxford: Oxford University Press, vol. 131, no. 1, p. 59-70. E-ISSN 1095-8290. DOI https://doi.org/10.1093/aob/mcab094
0305-7364
http://repositorio.unne.edu.ar/handle/123456789/58286
identifier_str_mv Fujiwara, Tao, et al., 2023. Evolution of genome space occupation in ferns : linking genome diversity and species richness. Annals of Botany. Oxford: Oxford University Press, vol. 131, no. 1, p. 59-70. E-ISSN 1095-8290. DOI https://doi.org/10.1093/aob/mcab094
0305-7364
url http://repositorio.unne.edu.ar/handle/123456789/58286
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://doi.org/10.1093/aob/mcab094
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-nd/2.5/ar/
Atribución-NoComercial-SinDerivadas 2.5 Argentina
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-nd/2.5/ar/
Atribución-NoComercial-SinDerivadas 2.5 Argentina
dc.format.none.fl_str_mv application/pdf
p. 59-70
application/pdf
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv Annals of Botany, 2023, vol. 131, no. 1, p. 59-70.
reponame:Repositorio Institucional de la Universidad Nacional del Nordeste (UNNE)
instname:Universidad Nacional del Nordeste
reponame_str Repositorio Institucional de la Universidad Nacional del Nordeste (UNNE)
collection Repositorio Institucional de la Universidad Nacional del Nordeste (UNNE)
instname_str Universidad Nacional del Nordeste
repository.name.fl_str_mv Repositorio Institucional de la Universidad Nacional del Nordeste (UNNE) - Universidad Nacional del Nordeste
repository.mail.fl_str_mv ososa@bib.unne.edu.ar;sergio.alegria@unne.edu.ar
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