Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units

Autores
Duhour, Andrés Esteban; De La Vega, Hernán; Falco, Liliana; Coviella, Carlos; Velazco, Nicolás; Sandler, Rosana; Rionda, Macarena; Díaz Porres, Mónica; Saravia, Leonardo
Año de publicación
2023
Idioma
inglés
Tipo de recurso
artículo
Estado
versión aceptada
Descripción
Fil: Duhour, Andrés Esteban. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: De La Vega, Hernán. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Falco, Liliana. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Coviella, Carlos Eduardo. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Velazco, Nicolás. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Sandler, Rosana. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Rionda, Macarena. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Díaz Porres, Mónica. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Saravia, Leonardo. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
The sensitivity of some taxonomic groups to environmental conditions allows for their use as ecological state indicators. In ecological communities, this analysis is of interest to know which species or taxa are indicators of particular environment conditions, taking into account their presence in a set of sampling units. There are different approaches to estimate indicator species, in this work we develop a new tool for this task identifying indicator units defined as species (or taxa) whose observed frequencies are not uniform between environments or groups of sample units. The package provides methods to estimate the indicator species, the belonging of new samples to a given environment, and returns the frequency of taxonomic units in a selected combination of environmental factors as an estimation of the ecological niche. EcoIndicators was tested on a data set provided with the package and on independent samples of soil fauna communities and is freely available in https:// github.com/lsaravia/EcoIndicators.
Materia
Indicator Species
Ecological community analysis
Samples grouping estimation
Ecological Niche
Soil Fauna
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
Repositorio
REDIUNLU (UNLu)
Institución
Universidad Nacional de Luján
OAI Identificador
oai:ri.unlu.edu.ar:rediunlu/2569
Acceder
id REDIUNLU_10628b854fcf35a86ba2df90a1c2222f
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network_acronym_str REDIUNLU
repository_id_str w
network_name_str REDIUNLU (UNLu)
spelling Ecoindicators: An R Package for the Identification of Indicator Taxonomic UnitsDuhour, Andrés EstebanDe La Vega, HernánFalco, LilianaCoviella, CarlosVelazco, NicolásSandler, RosanaRionda, MacarenaDíaz Porres, MónicaSaravia, LeonardoIndicator SpeciesEcological community analysisSamples grouping estimationEcological NicheSoil FaunaFil: Duhour, Andrés Esteban. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.Fil: De La Vega, Hernán. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.Fil: Falco, Liliana. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.Fil: Coviella, Carlos Eduardo. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.Fil: Velazco, Nicolás. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.Fil: Sandler, Rosana. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.Fil: Rionda, Macarena. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.Fil: Díaz Porres, Mónica. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.Fil: Saravia, Leonardo. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.The sensitivity of some taxonomic groups to environmental conditions allows for their use as ecological state indicators. In ecological communities, this analysis is of interest to know which species or taxa are indicators of particular environment conditions, taking into account their presence in a set of sampling units. There are different approaches to estimate indicator species, in this work we develop a new tool for this task identifying indicator units defined as species (or taxa) whose observed frequencies are not uniform between environments or groups of sample units. The package provides methods to estimate the indicator species, the belonging of new samples to a given environment, and returns the frequency of taxonomic units in a selected combination of environmental factors as an estimation of the ecological niche. EcoIndicators was tested on a data set provided with the package and on independent samples of soil fauna communities and is freely available in https:// github.com/lsaravia/EcoIndicators.Journal of Open Research Software2024-08-08T17:21:02Z2024-08-08T17:21:02Z2023Articleinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://ri.unlu.edu.ar/xmlui/handle/rediunlu/2569engeninfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-nd/2.5/ar/reponame:REDIUNLU (UNLu)instname:Universidad Nacional de Luján2025-09-29T14:29:41Zoai:ri.unlu.edu.ar:rediunlu/2569instacron:UNLuInstitucionalhttps://ri.unlu.edu.arUniversidad públicaNo correspondehttps://ri.unlu.edu.ar/oaivcano@unlu.edu.ar;fgutierrez@mail.unlu.edu.ar;faquilinogutierrez@gmail.com ArgentinaNo correspondeNo correspondeNo correspondeopendoar:w2025-09-29 14:29:41.791REDIUNLU (UNLu) - Universidad Nacional de Lujánfalse
dc.title.none.fl_str_mv Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
title Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
spellingShingle Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
Duhour, Andrés Esteban
Indicator Species
Ecological community analysis
Samples grouping estimation
Ecological Niche
Soil Fauna
title_short Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
title_full Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
title_fullStr Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
title_full_unstemmed Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
title_sort Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units
dc.creator.none.fl_str_mv Duhour, Andrés Esteban
De La Vega, Hernán
Falco, Liliana
Coviella, Carlos
Velazco, Nicolás
Sandler, Rosana
Rionda, Macarena
Díaz Porres, Mónica
Saravia, Leonardo
author Duhour, Andrés Esteban
author_facet Duhour, Andrés Esteban
De La Vega, Hernán
Falco, Liliana
Coviella, Carlos
Velazco, Nicolás
Sandler, Rosana
Rionda, Macarena
Díaz Porres, Mónica
Saravia, Leonardo
author_role author
author2 De La Vega, Hernán
Falco, Liliana
Coviella, Carlos
Velazco, Nicolás
Sandler, Rosana
Rionda, Macarena
Díaz Porres, Mónica
Saravia, Leonardo
author2_role author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Indicator Species
Ecological community analysis
Samples grouping estimation
Ecological Niche
Soil Fauna
topic Indicator Species
Ecological community analysis
Samples grouping estimation
Ecological Niche
Soil Fauna
dc.description.none.fl_txt_mv Fil: Duhour, Andrés Esteban. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: De La Vega, Hernán. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Falco, Liliana. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Coviella, Carlos Eduardo. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Velazco, Nicolás. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Sandler, Rosana. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Rionda, Macarena. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Díaz Porres, Mónica. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
Fil: Saravia, Leonardo. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
The sensitivity of some taxonomic groups to environmental conditions allows for their use as ecological state indicators. In ecological communities, this analysis is of interest to know which species or taxa are indicators of particular environment conditions, taking into account their presence in a set of sampling units. There are different approaches to estimate indicator species, in this work we develop a new tool for this task identifying indicator units defined as species (or taxa) whose observed frequencies are not uniform between environments or groups of sample units. The package provides methods to estimate the indicator species, the belonging of new samples to a given environment, and returns the frequency of taxonomic units in a selected combination of environmental factors as an estimation of the ecological niche. EcoIndicators was tested on a data set provided with the package and on independent samples of soil fauna communities and is freely available in https:// github.com/lsaravia/EcoIndicators.
description Fil: Duhour, Andrés Esteban. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina.
publishDate 2023
dc.date.none.fl_str_mv 2023
2024-08-08T17:21:02Z
2024-08-08T17:21:02Z
dc.type.none.fl_str_mv Article
info:eu-repo/semantics/article
info:eu-repo/semantics/acceptedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str acceptedVersion
dc.identifier.none.fl_str_mv http://ri.unlu.edu.ar/xmlui/handle/rediunlu/2569
url http://ri.unlu.edu.ar/xmlui/handle/rediunlu/2569
dc.language.none.fl_str_mv eng
en
language eng
language_invalid_str_mv en
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Journal of Open Research Software
publisher.none.fl_str_mv Journal of Open Research Software
dc.source.none.fl_str_mv reponame:REDIUNLU (UNLu)
instname:Universidad Nacional de Luján
reponame_str REDIUNLU (UNLu)
collection REDIUNLU (UNLu)
instname_str Universidad Nacional de Luján
repository.name.fl_str_mv REDIUNLU (UNLu) - Universidad Nacional de Luján
repository.mail.fl_str_mv vcano@unlu.edu.ar;fgutierrez@mail.unlu.edu.ar;faquilinogutierrez@gmail.com
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