Characterization of the complete mitochondrial genome of Amblyomma ovale, comparative analyses and phylogenetic considerations

Autores
Uribe, Juan E.; Nava, Santiago; Murphy, Katherine R.; Tarragona, Evelina Luisa; Castro, Lyda R.
Año de publicación
2020
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
In this study, we sequenced two complete mitochondrial genomes of Amblyomma ovale, a tick of public health importance. Sequencing two distinct individuals, the resulting mitochondrial genomes were 14,756 and 14,760 bp in length and maintained the same gene order previously reported in Amblyomma. These were combined with RNA-seq derived mitochondrial sequences from three additional species, Amblyomma aureolatum, Amblyomma maculatum, and Amblyomma moreliae, to carry out mitogenome comparative and evolutionary analyses against all previously published tick mitochondrial genomes. We described a derivative genome rearrangement that isolates Ixodes from the remaining Ixodidae and consists of both a reverse translocation as well as an event of Tandem Duplication Random Loss. Genetic distance analyses indicated that cox2, nd1, nd5, and 16S are good candidates for future population studies in A. ovale. The phylogenetic analyses corroborated the utility of complete mitochondrial genomes as phylogenetic markers within the group. This study further supplements the genome information available for Amblyomma and facilitates future evolutionary and population genetic studies within the genus.
EEA Rafaela
Fil: Uribe, Juan E. Museo Nacional de Ciencias Naturales. Department of Biodiversity and Evolutionary Biology; España. Smithsonian Institution. National Museum of Natural History. Department of Invertebrate Zoology; Estados Unidos
Fil: Nava, Santiago. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Rafaela; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Murphy, Katherine R. Smithsonian Institution. National Museum of Natural History. Laboratories of Analytical Biology; Estados Unidos
Fil: Tarragona, Evelina Luisa. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Rafaela; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Castro, Lyda R. Universidad del Magdalena. Grupo de Investigación Evolución, Sistemática y Ecología Molecular; Colombia
Fuente
Experimental and Applied Acarology 81 : 421–439, (2020)
Materia
Amblyomma
Genomas
Filogenia
Marcadores Genéticos
Genomes
Phylogeny
Genetic Markers
Garrapatas
Amblyomma ovale
Marcadores Moleculares
Ticks
Nivel de accesibilidad
acceso restringido
Condiciones de uso
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
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network_name_str INTA Digital (INTA)
spelling Characterization of the complete mitochondrial genome of Amblyomma ovale, comparative analyses and phylogenetic considerationsUribe, Juan E.Nava, SantiagoMurphy, Katherine R.Tarragona, Evelina LuisaCastro, Lyda R.AmblyommaGenomasFilogeniaMarcadores GenéticosGenomesPhylogenyGenetic MarkersGarrapatasAmblyomma ovaleMarcadores MolecularesTicksIn this study, we sequenced two complete mitochondrial genomes of Amblyomma ovale, a tick of public health importance. Sequencing two distinct individuals, the resulting mitochondrial genomes were 14,756 and 14,760 bp in length and maintained the same gene order previously reported in Amblyomma. These were combined with RNA-seq derived mitochondrial sequences from three additional species, Amblyomma aureolatum, Amblyomma maculatum, and Amblyomma moreliae, to carry out mitogenome comparative and evolutionary analyses against all previously published tick mitochondrial genomes. We described a derivative genome rearrangement that isolates Ixodes from the remaining Ixodidae and consists of both a reverse translocation as well as an event of Tandem Duplication Random Loss. Genetic distance analyses indicated that cox2, nd1, nd5, and 16S are good candidates for future population studies in A. ovale. The phylogenetic analyses corroborated the utility of complete mitochondrial genomes as phylogenetic markers within the group. This study further supplements the genome information available for Amblyomma and facilitates future evolutionary and population genetic studies within the genus.EEA RafaelaFil: Uribe, Juan E. Museo Nacional de Ciencias Naturales. Department of Biodiversity and Evolutionary Biology; España. Smithsonian Institution. National Museum of Natural History. Department of Invertebrate Zoology; Estados UnidosFil: Nava, Santiago. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Rafaela; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Murphy, Katherine R. Smithsonian Institution. National Museum of Natural History. Laboratories of Analytical Biology; Estados UnidosFil: Tarragona, Evelina Luisa. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Rafaela; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Castro, Lyda R. Universidad del Magdalena. Grupo de Investigación Evolución, Sistemática y Ecología Molecular; ColombiaSpringer2020-10-15T12:28:51Z2020-10-15T12:28:51Z2020-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/8056https://link.springer.com/article/10.1007/s10493-020-00512-30168-81621572-9702https://doi.org/10.1007/s10493-020-00512-3Experimental and Applied Acarology 81 : 421–439, (2020)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/restrictedAccess2025-10-16T09:29:55Zoai:localhost:20.500.12123/8056instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-10-16 09:29:55.543INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Characterization of the complete mitochondrial genome of Amblyomma ovale, comparative analyses and phylogenetic considerations
title Characterization of the complete mitochondrial genome of Amblyomma ovale, comparative analyses and phylogenetic considerations
spellingShingle Characterization of the complete mitochondrial genome of Amblyomma ovale, comparative analyses and phylogenetic considerations
Uribe, Juan E.
Amblyomma
Genomas
Filogenia
Marcadores Genéticos
Genomes
Phylogeny
Genetic Markers
Garrapatas
Amblyomma ovale
Marcadores Moleculares
Ticks
title_short Characterization of the complete mitochondrial genome of Amblyomma ovale, comparative analyses and phylogenetic considerations
title_full Characterization of the complete mitochondrial genome of Amblyomma ovale, comparative analyses and phylogenetic considerations
title_fullStr Characterization of the complete mitochondrial genome of Amblyomma ovale, comparative analyses and phylogenetic considerations
title_full_unstemmed Characterization of the complete mitochondrial genome of Amblyomma ovale, comparative analyses and phylogenetic considerations
title_sort Characterization of the complete mitochondrial genome of Amblyomma ovale, comparative analyses and phylogenetic considerations
dc.creator.none.fl_str_mv Uribe, Juan E.
Nava, Santiago
Murphy, Katherine R.
Tarragona, Evelina Luisa
Castro, Lyda R.
author Uribe, Juan E.
author_facet Uribe, Juan E.
Nava, Santiago
Murphy, Katherine R.
Tarragona, Evelina Luisa
Castro, Lyda R.
author_role author
author2 Nava, Santiago
Murphy, Katherine R.
Tarragona, Evelina Luisa
Castro, Lyda R.
author2_role author
author
author
author
dc.subject.none.fl_str_mv Amblyomma
Genomas
Filogenia
Marcadores Genéticos
Genomes
Phylogeny
Genetic Markers
Garrapatas
Amblyomma ovale
Marcadores Moleculares
Ticks
topic Amblyomma
Genomas
Filogenia
Marcadores Genéticos
Genomes
Phylogeny
Genetic Markers
Garrapatas
Amblyomma ovale
Marcadores Moleculares
Ticks
dc.description.none.fl_txt_mv In this study, we sequenced two complete mitochondrial genomes of Amblyomma ovale, a tick of public health importance. Sequencing two distinct individuals, the resulting mitochondrial genomes were 14,756 and 14,760 bp in length and maintained the same gene order previously reported in Amblyomma. These were combined with RNA-seq derived mitochondrial sequences from three additional species, Amblyomma aureolatum, Amblyomma maculatum, and Amblyomma moreliae, to carry out mitogenome comparative and evolutionary analyses against all previously published tick mitochondrial genomes. We described a derivative genome rearrangement that isolates Ixodes from the remaining Ixodidae and consists of both a reverse translocation as well as an event of Tandem Duplication Random Loss. Genetic distance analyses indicated that cox2, nd1, nd5, and 16S are good candidates for future population studies in A. ovale. The phylogenetic analyses corroborated the utility of complete mitochondrial genomes as phylogenetic markers within the group. This study further supplements the genome information available for Amblyomma and facilitates future evolutionary and population genetic studies within the genus.
EEA Rafaela
Fil: Uribe, Juan E. Museo Nacional de Ciencias Naturales. Department of Biodiversity and Evolutionary Biology; España. Smithsonian Institution. National Museum of Natural History. Department of Invertebrate Zoology; Estados Unidos
Fil: Nava, Santiago. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Rafaela; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Murphy, Katherine R. Smithsonian Institution. National Museum of Natural History. Laboratories of Analytical Biology; Estados Unidos
Fil: Tarragona, Evelina Luisa. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Rafaela; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Castro, Lyda R. Universidad del Magdalena. Grupo de Investigación Evolución, Sistemática y Ecología Molecular; Colombia
description In this study, we sequenced two complete mitochondrial genomes of Amblyomma ovale, a tick of public health importance. Sequencing two distinct individuals, the resulting mitochondrial genomes were 14,756 and 14,760 bp in length and maintained the same gene order previously reported in Amblyomma. These were combined with RNA-seq derived mitochondrial sequences from three additional species, Amblyomma aureolatum, Amblyomma maculatum, and Amblyomma moreliae, to carry out mitogenome comparative and evolutionary analyses against all previously published tick mitochondrial genomes. We described a derivative genome rearrangement that isolates Ixodes from the remaining Ixodidae and consists of both a reverse translocation as well as an event of Tandem Duplication Random Loss. Genetic distance analyses indicated that cox2, nd1, nd5, and 16S are good candidates for future population studies in A. ovale. The phylogenetic analyses corroborated the utility of complete mitochondrial genomes as phylogenetic markers within the group. This study further supplements the genome information available for Amblyomma and facilitates future evolutionary and population genetic studies within the genus.
publishDate 2020
dc.date.none.fl_str_mv 2020-10-15T12:28:51Z
2020-10-15T12:28:51Z
2020-06
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/8056
https://link.springer.com/article/10.1007/s10493-020-00512-3
0168-8162
1572-9702
https://doi.org/10.1007/s10493-020-00512-3
url http://hdl.handle.net/20.500.12123/8056
https://link.springer.com/article/10.1007/s10493-020-00512-3
https://doi.org/10.1007/s10493-020-00512-3
identifier_str_mv 0168-8162
1572-9702
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/restrictedAccess
eu_rights_str_mv restrictedAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv Experimental and Applied Acarology 81 : 421–439, (2020)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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