Metabolic classification of South American Ilex species by NMR-based metabolomics

Autores
Kim, Hye Kyong; Saifullah; Khan, Saifullah A.Jamil; Wilson, Erica Georgina; Prat Kricun, Sergio; Meissner, Axel; Göraler, Sibel; Deelder, André Martien; Choi, Young-hae; Verpoorte, Robert
Año de publicación
2010
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The genus Ilex to which mate (Ilex paraguariensis) belongs, consists of more than 500 species. A wide range of metabolites including saponins and phenylpropanoids has been reported from Ilex species. However, despite the previous works on the Ilex metabolites, the metabolic similarities between species which can be used for chemotaxonomy of the species are not clear yet. In this study, nuclear magnetic resonance (NMR) spectroscopy-based metabolomics was applied to the classification of 11 South American Ilex species, namely, Ilex argentina, Ilex brasiliensis, Ilex brevicuspis, Ilex dumosa var. dumosa, I. dumosa var. guaranina, Ilex integerrima, Ilex microdonta, I. paraguariensis var. paraguariensis, Ilex pseudobuxus, Ilex taubertiana, and Ilex theezans. 1H NMR combined with principal component analysis (PCA), partial least square-discriminant analysis (PLS-DA) and hierarchical cluster analysis (HCA) showed a clear separation between species and resulted in four groups based on metabolomic similarities. The signal congestion of 1H NMR spectra was overcome by the implementation of two-dimensional (2D)-J-resolved and heteronuclear single quantum coherence (HSQC). From the results obtained by 1D- and 2D-NMR-based metabolomics it was concluded that species included in group A (I. paraguariensis) were metabolically characterized by a higher amount of xanthines, and phenolics including phenylpropanoids and flavonoids; group B (I. dumosa var. dumosa and I. dumosa var. guaranina) with oleanane type saponins; group C (I. brasiliensis, I. integerrima, I. pseudobuxus and I. theezans) with arbutin and dicaffeoylquinic acids, and group D (I. argentina, I. brevicuspis, I. microdonta and I. taubertiana) with the highest level of ursane-type saponins. Clear metabolomic discrimination of Ilex species and varieties in this study makes the chemotaxonomic classification of Ilex species possible.
EEA Cerro Azul
Fil: Kim, Hye Kyong. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda
Fil: Saifullah. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda. University of Karachi. International Center for Chemical and Biological Sciences. Research Institute of Chemistry. Biotechnology Wing H.E.J.; Paquistán
Fil: Khan, Saifullah A.Jamil. University of Karachi. International Center for Chemical and Biological Sciences. Research Institute of Chemistry. Biotechnology Wing H.E.J.; Paquistán
Fil: Wilson, Erica Georgina. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda
Fil: Prat Kricun, Sergio. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Cerro Azul; Argentina
Fil: Meissner, Axel. Leiden University Medical Center. Department of Parasitology; Holanda
Fil: Göraler, Sibel. Leiden University Medical Center. Department of Parasitology; Holanda
Fil: Deelder, André Martien. Leiden University Medical Center. Department of Parasitology; Holanda
Fil: Choi, Young-hae. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda
Fil: Verpoorte, Robert. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda
Fuente
Phytochemistry 71 (7) : 773-784 (May 2010)
Materia
Ilex
Ilex paraguariensis
Variedades
Metabolismo
Espectroscopia RMN
Quimiotaxonomía
Varieties
Metabolism
NMR Spectroscopy
Chemotaxonomy
South America
América del Sur
Espectroscopia Resonancia Magnética Nuclear
Nivel de accesibilidad
acceso restringido
Condiciones de uso
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/5499

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oai_identifier_str oai:localhost:20.500.12123/5499
network_acronym_str INTADig
repository_id_str l
network_name_str INTA Digital (INTA)
spelling Metabolic classification of South American Ilex species by NMR-based metabolomicsKim, Hye KyongSaifullahKhan, Saifullah A.JamilWilson, Erica GeorginaPrat Kricun, SergioMeissner, AxelGöraler, SibelDeelder, André MartienChoi, Young-haeVerpoorte, RobertIlexIlex paraguariensisVariedadesMetabolismoEspectroscopia RMNQuimiotaxonomíaVarietiesMetabolismNMR SpectroscopyChemotaxonomySouth AmericaAmérica del SurEspectroscopia Resonancia Magnética NuclearThe genus Ilex to which mate (Ilex paraguariensis) belongs, consists of more than 500 species. A wide range of metabolites including saponins and phenylpropanoids has been reported from Ilex species. However, despite the previous works on the Ilex metabolites, the metabolic similarities between species which can be used for chemotaxonomy of the species are not clear yet. In this study, nuclear magnetic resonance (NMR) spectroscopy-based metabolomics was applied to the classification of 11 South American Ilex species, namely, Ilex argentina, Ilex brasiliensis, Ilex brevicuspis, Ilex dumosa var. dumosa, I. dumosa var. guaranina, Ilex integerrima, Ilex microdonta, I. paraguariensis var. paraguariensis, Ilex pseudobuxus, Ilex taubertiana, and Ilex theezans. 1H NMR combined with principal component analysis (PCA), partial least square-discriminant analysis (PLS-DA) and hierarchical cluster analysis (HCA) showed a clear separation between species and resulted in four groups based on metabolomic similarities. The signal congestion of 1H NMR spectra was overcome by the implementation of two-dimensional (2D)-J-resolved and heteronuclear single quantum coherence (HSQC). From the results obtained by 1D- and 2D-NMR-based metabolomics it was concluded that species included in group A (I. paraguariensis) were metabolically characterized by a higher amount of xanthines, and phenolics including phenylpropanoids and flavonoids; group B (I. dumosa var. dumosa and I. dumosa var. guaranina) with oleanane type saponins; group C (I. brasiliensis, I. integerrima, I. pseudobuxus and I. theezans) with arbutin and dicaffeoylquinic acids, and group D (I. argentina, I. brevicuspis, I. microdonta and I. taubertiana) with the highest level of ursane-type saponins. Clear metabolomic discrimination of Ilex species and varieties in this study makes the chemotaxonomic classification of Ilex species possible.EEA Cerro AzulFil: Kim, Hye Kyong. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; HolandaFil: Saifullah. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda. University of Karachi. International Center for Chemical and Biological Sciences. Research Institute of Chemistry. Biotechnology Wing H.E.J.; PaquistánFil: Khan, Saifullah A.Jamil. University of Karachi. International Center for Chemical and Biological Sciences. Research Institute of Chemistry. Biotechnology Wing H.E.J.; PaquistánFil: Wilson, Erica Georgina. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; HolandaFil: Prat Kricun, Sergio. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Cerro Azul; ArgentinaFil: Meissner, Axel. Leiden University Medical Center. Department of Parasitology; HolandaFil: Göraler, Sibel. Leiden University Medical Center. Department of Parasitology; HolandaFil: Deelder, André Martien. Leiden University Medical Center. Department of Parasitology; HolandaFil: Choi, Young-hae. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; HolandaFil: Verpoorte, Robert. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; HolandaElsevier2019-07-15T13:43:44Z2019-07-15T13:43:44Z2010-05info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttps://www.sciencedirect.com/science/article/pii/S0031942210000427http://hdl.handle.net/20.500.12123/54990031-94221873-3700https://doi.org/10.1016/j.phytochem.2010.02.001Phytochemistry 71 (7) : 773-784 (May 2010)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/restrictedAccess2025-10-23T11:17:00Zoai:localhost:20.500.12123/5499instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-10-23 11:17:00.771INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv Metabolic classification of South American Ilex species by NMR-based metabolomics
title Metabolic classification of South American Ilex species by NMR-based metabolomics
spellingShingle Metabolic classification of South American Ilex species by NMR-based metabolomics
Kim, Hye Kyong
Ilex
Ilex paraguariensis
Variedades
Metabolismo
Espectroscopia RMN
Quimiotaxonomía
Varieties
Metabolism
NMR Spectroscopy
Chemotaxonomy
South America
América del Sur
Espectroscopia Resonancia Magnética Nuclear
title_short Metabolic classification of South American Ilex species by NMR-based metabolomics
title_full Metabolic classification of South American Ilex species by NMR-based metabolomics
title_fullStr Metabolic classification of South American Ilex species by NMR-based metabolomics
title_full_unstemmed Metabolic classification of South American Ilex species by NMR-based metabolomics
title_sort Metabolic classification of South American Ilex species by NMR-based metabolomics
dc.creator.none.fl_str_mv Kim, Hye Kyong
Saifullah
Khan, Saifullah A.Jamil
Wilson, Erica Georgina
Prat Kricun, Sergio
Meissner, Axel
Göraler, Sibel
Deelder, André Martien
Choi, Young-hae
Verpoorte, Robert
author Kim, Hye Kyong
author_facet Kim, Hye Kyong
Saifullah
Khan, Saifullah A.Jamil
Wilson, Erica Georgina
Prat Kricun, Sergio
Meissner, Axel
Göraler, Sibel
Deelder, André Martien
Choi, Young-hae
Verpoorte, Robert
author_role author
author2 Saifullah
Khan, Saifullah A.Jamil
Wilson, Erica Georgina
Prat Kricun, Sergio
Meissner, Axel
Göraler, Sibel
Deelder, André Martien
Choi, Young-hae
Verpoorte, Robert
author2_role author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Ilex
Ilex paraguariensis
Variedades
Metabolismo
Espectroscopia RMN
Quimiotaxonomía
Varieties
Metabolism
NMR Spectroscopy
Chemotaxonomy
South America
América del Sur
Espectroscopia Resonancia Magnética Nuclear
topic Ilex
Ilex paraguariensis
Variedades
Metabolismo
Espectroscopia RMN
Quimiotaxonomía
Varieties
Metabolism
NMR Spectroscopy
Chemotaxonomy
South America
América del Sur
Espectroscopia Resonancia Magnética Nuclear
dc.description.none.fl_txt_mv The genus Ilex to which mate (Ilex paraguariensis) belongs, consists of more than 500 species. A wide range of metabolites including saponins and phenylpropanoids has been reported from Ilex species. However, despite the previous works on the Ilex metabolites, the metabolic similarities between species which can be used for chemotaxonomy of the species are not clear yet. In this study, nuclear magnetic resonance (NMR) spectroscopy-based metabolomics was applied to the classification of 11 South American Ilex species, namely, Ilex argentina, Ilex brasiliensis, Ilex brevicuspis, Ilex dumosa var. dumosa, I. dumosa var. guaranina, Ilex integerrima, Ilex microdonta, I. paraguariensis var. paraguariensis, Ilex pseudobuxus, Ilex taubertiana, and Ilex theezans. 1H NMR combined with principal component analysis (PCA), partial least square-discriminant analysis (PLS-DA) and hierarchical cluster analysis (HCA) showed a clear separation between species and resulted in four groups based on metabolomic similarities. The signal congestion of 1H NMR spectra was overcome by the implementation of two-dimensional (2D)-J-resolved and heteronuclear single quantum coherence (HSQC). From the results obtained by 1D- and 2D-NMR-based metabolomics it was concluded that species included in group A (I. paraguariensis) were metabolically characterized by a higher amount of xanthines, and phenolics including phenylpropanoids and flavonoids; group B (I. dumosa var. dumosa and I. dumosa var. guaranina) with oleanane type saponins; group C (I. brasiliensis, I. integerrima, I. pseudobuxus and I. theezans) with arbutin and dicaffeoylquinic acids, and group D (I. argentina, I. brevicuspis, I. microdonta and I. taubertiana) with the highest level of ursane-type saponins. Clear metabolomic discrimination of Ilex species and varieties in this study makes the chemotaxonomic classification of Ilex species possible.
EEA Cerro Azul
Fil: Kim, Hye Kyong. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda
Fil: Saifullah. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda. University of Karachi. International Center for Chemical and Biological Sciences. Research Institute of Chemistry. Biotechnology Wing H.E.J.; Paquistán
Fil: Khan, Saifullah A.Jamil. University of Karachi. International Center for Chemical and Biological Sciences. Research Institute of Chemistry. Biotechnology Wing H.E.J.; Paquistán
Fil: Wilson, Erica Georgina. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda
Fil: Prat Kricun, Sergio. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Cerro Azul; Argentina
Fil: Meissner, Axel. Leiden University Medical Center. Department of Parasitology; Holanda
Fil: Göraler, Sibel. Leiden University Medical Center. Department of Parasitology; Holanda
Fil: Deelder, André Martien. Leiden University Medical Center. Department of Parasitology; Holanda
Fil: Choi, Young-hae. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda
Fil: Verpoorte, Robert. Leiden University. Institute of Biology. Section Metabolomics. Division of Pharmacognosy; Holanda
description The genus Ilex to which mate (Ilex paraguariensis) belongs, consists of more than 500 species. A wide range of metabolites including saponins and phenylpropanoids has been reported from Ilex species. However, despite the previous works on the Ilex metabolites, the metabolic similarities between species which can be used for chemotaxonomy of the species are not clear yet. In this study, nuclear magnetic resonance (NMR) spectroscopy-based metabolomics was applied to the classification of 11 South American Ilex species, namely, Ilex argentina, Ilex brasiliensis, Ilex brevicuspis, Ilex dumosa var. dumosa, I. dumosa var. guaranina, Ilex integerrima, Ilex microdonta, I. paraguariensis var. paraguariensis, Ilex pseudobuxus, Ilex taubertiana, and Ilex theezans. 1H NMR combined with principal component analysis (PCA), partial least square-discriminant analysis (PLS-DA) and hierarchical cluster analysis (HCA) showed a clear separation between species and resulted in four groups based on metabolomic similarities. The signal congestion of 1H NMR spectra was overcome by the implementation of two-dimensional (2D)-J-resolved and heteronuclear single quantum coherence (HSQC). From the results obtained by 1D- and 2D-NMR-based metabolomics it was concluded that species included in group A (I. paraguariensis) were metabolically characterized by a higher amount of xanthines, and phenolics including phenylpropanoids and flavonoids; group B (I. dumosa var. dumosa and I. dumosa var. guaranina) with oleanane type saponins; group C (I. brasiliensis, I. integerrima, I. pseudobuxus and I. theezans) with arbutin and dicaffeoylquinic acids, and group D (I. argentina, I. brevicuspis, I. microdonta and I. taubertiana) with the highest level of ursane-type saponins. Clear metabolomic discrimination of Ilex species and varieties in this study makes the chemotaxonomic classification of Ilex species possible.
publishDate 2010
dc.date.none.fl_str_mv 2010-05
2019-07-15T13:43:44Z
2019-07-15T13:43:44Z
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://www.sciencedirect.com/science/article/pii/S0031942210000427
http://hdl.handle.net/20.500.12123/5499
0031-9422
1873-3700
https://doi.org/10.1016/j.phytochem.2010.02.001
url https://www.sciencedirect.com/science/article/pii/S0031942210000427
http://hdl.handle.net/20.500.12123/5499
https://doi.org/10.1016/j.phytochem.2010.02.001
identifier_str_mv 0031-9422
1873-3700
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/restrictedAccess
eu_rights_str_mv restrictedAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv Phytochemistry 71 (7) : 773-784 (May 2010)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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