A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis

Autores
Nibert, Max L.; Manny, Austin R.; Debat, Humberto Julio; Firth, Andrew E.; Bertini, Laura; Caruso, Carla
Año de publicación
2018
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Because so few viruses in the family Barnaviridae have been reported, we searched for more of them in public sequence databases. Here, we report the complete coding sequence of Colobanthus quitensis associated barnavirus 1, mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis. The 4.2-kb plus-strand sequence of this virus encompasses four main open reading frames (ORFs), as expected for barnaviruses, including ORFs for a protease-containing polyprotein, an RNA-dependent RNA polymerase whose translation appears to rely on − 1 ribosomal frameshifting, and a capsid protein that is likely to be translated from a subgenomic RNA. The possible derivation of this virus from a fungus associated with C. quitensis is discussed.
Instituto de Patología Vegetal
Fil: Nibert, Max L. Harvard Medical School. Department of Microbiology and Immunobiology; Estados Unidos. Harvard University. Ph.D. Program in Virology; Estados Unidos
Fil: Manny, Austin R. Harvard University. Ph.D. Program in Virology; Estados Unidos
Fil: Debat, Humberto Julio. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Firth, Andrew E. University of Cambridge. Division of Virology. Department of Pathology; Gran Bretaña
Fil: Bertini, Laura. Universita degli Studi della Tuscia. Department of Ecological and Biological Sciences; Italia
Fil: Caruso, Carla. Universita degli Studi della Tuscia. Department of Ecological and Biological Sciences; Italia
Fuente
Archives of virology 163 (7) : 1921–1926. (July 2018)
Materia
Genética
Secuencia Nucleotídica
Virus de las Plantas
Genetics
Nucleotide Sequence
Plant Viruses
Barnavirus
Colobanthus quitensis
Secuencia Genética
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-sa/4.0/
Repositorio
INTA Digital (INTA)
Institución
Instituto Nacional de Tecnología Agropecuaria
OAI Identificador
oai:localhost:20.500.12123/2284
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spelling A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensisNibert, Max L.Manny, Austin R.Debat, Humberto JulioFirth, Andrew E.Bertini, LauraCaruso, CarlaGenéticaSecuencia NucleotídicaVirus de las PlantasGeneticsNucleotide SequencePlant VirusesBarnavirusColobanthus quitensisSecuencia GenéticaBecause so few viruses in the family Barnaviridae have been reported, we searched for more of them in public sequence databases. Here, we report the complete coding sequence of Colobanthus quitensis associated barnavirus 1, mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis. The 4.2-kb plus-strand sequence of this virus encompasses four main open reading frames (ORFs), as expected for barnaviruses, including ORFs for a protease-containing polyprotein, an RNA-dependent RNA polymerase whose translation appears to rely on − 1 ribosomal frameshifting, and a capsid protein that is likely to be translated from a subgenomic RNA. The possible derivation of this virus from a fungus associated with C. quitensis is discussed.Instituto de Patología VegetalFil: Nibert, Max L. Harvard Medical School. Department of Microbiology and Immunobiology; Estados Unidos. Harvard University. Ph.D. Program in Virology; Estados UnidosFil: Manny, Austin R. Harvard University. Ph.D. Program in Virology; Estados UnidosFil: Debat, Humberto Julio. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; ArgentinaFil: Firth, Andrew E. University of Cambridge. Division of Virology. Department of Pathology; Gran BretañaFil: Bertini, Laura. Universita degli Studi della Tuscia. Department of Ecological and Biological Sciences; ItaliaFil: Caruso, Carla. Universita degli Studi della Tuscia. Department of Ecological and Biological Sciences; Italia2018-04-23T14:22:51Z2018-04-23T14:22:51Z2018-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/2284https://link.springer.com/article/10.1007%2Fs00705-018-3794-x0304-8608 (Print)1432-8798 (Online)https://doi.org/10.1007/s00705-018-3794-xArchives of virology 163 (7) : 1921–1926. (July 2018)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-sa/4.0/Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)2025-09-29T13:44:17Zoai:localhost:20.500.12123/2284instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:44:18.246INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse
dc.title.none.fl_str_mv A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis
title A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis
spellingShingle A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis
Nibert, Max L.
Genética
Secuencia Nucleotídica
Virus de las Plantas
Genetics
Nucleotide Sequence
Plant Viruses
Barnavirus
Colobanthus quitensis
Secuencia Genética
title_short A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis
title_full A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis
title_fullStr A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis
title_full_unstemmed A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis
title_sort A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis
dc.creator.none.fl_str_mv Nibert, Max L.
Manny, Austin R.
Debat, Humberto Julio
Firth, Andrew E.
Bertini, Laura
Caruso, Carla
author Nibert, Max L.
author_facet Nibert, Max L.
Manny, Austin R.
Debat, Humberto Julio
Firth, Andrew E.
Bertini, Laura
Caruso, Carla
author_role author
author2 Manny, Austin R.
Debat, Humberto Julio
Firth, Andrew E.
Bertini, Laura
Caruso, Carla
author2_role author
author
author
author
author
dc.subject.none.fl_str_mv Genética
Secuencia Nucleotídica
Virus de las Plantas
Genetics
Nucleotide Sequence
Plant Viruses
Barnavirus
Colobanthus quitensis
Secuencia Genética
topic Genética
Secuencia Nucleotídica
Virus de las Plantas
Genetics
Nucleotide Sequence
Plant Viruses
Barnavirus
Colobanthus quitensis
Secuencia Genética
dc.description.none.fl_txt_mv Because so few viruses in the family Barnaviridae have been reported, we searched for more of them in public sequence databases. Here, we report the complete coding sequence of Colobanthus quitensis associated barnavirus 1, mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis. The 4.2-kb plus-strand sequence of this virus encompasses four main open reading frames (ORFs), as expected for barnaviruses, including ORFs for a protease-containing polyprotein, an RNA-dependent RNA polymerase whose translation appears to rely on − 1 ribosomal frameshifting, and a capsid protein that is likely to be translated from a subgenomic RNA. The possible derivation of this virus from a fungus associated with C. quitensis is discussed.
Instituto de Patología Vegetal
Fil: Nibert, Max L. Harvard Medical School. Department of Microbiology and Immunobiology; Estados Unidos. Harvard University. Ph.D. Program in Virology; Estados Unidos
Fil: Manny, Austin R. Harvard University. Ph.D. Program in Virology; Estados Unidos
Fil: Debat, Humberto Julio. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina
Fil: Firth, Andrew E. University of Cambridge. Division of Virology. Department of Pathology; Gran Bretaña
Fil: Bertini, Laura. Universita degli Studi della Tuscia. Department of Ecological and Biological Sciences; Italia
Fil: Caruso, Carla. Universita degli Studi della Tuscia. Department of Ecological and Biological Sciences; Italia
description Because so few viruses in the family Barnaviridae have been reported, we searched for more of them in public sequence databases. Here, we report the complete coding sequence of Colobanthus quitensis associated barnavirus 1, mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis. The 4.2-kb plus-strand sequence of this virus encompasses four main open reading frames (ORFs), as expected for barnaviruses, including ORFs for a protease-containing polyprotein, an RNA-dependent RNA polymerase whose translation appears to rely on − 1 ribosomal frameshifting, and a capsid protein that is likely to be translated from a subgenomic RNA. The possible derivation of this virus from a fungus associated with C. quitensis is discussed.
publishDate 2018
dc.date.none.fl_str_mv 2018-04-23T14:22:51Z
2018-04-23T14:22:51Z
2018-03
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/20.500.12123/2284
https://link.springer.com/article/10.1007%2Fs00705-018-3794-x
0304-8608 (Print)
1432-8798 (Online)
https://doi.org/10.1007/s00705-018-3794-x
url http://hdl.handle.net/20.500.12123/2284
https://link.springer.com/article/10.1007%2Fs00705-018-3794-x
https://doi.org/10.1007/s00705-018-3794-x
identifier_str_mv 0304-8608 (Print)
1432-8798 (Online)
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-sa/4.0/
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Archives of virology 163 (7) : 1921–1926. (July 2018)
reponame:INTA Digital (INTA)
instname:Instituto Nacional de Tecnología Agropecuaria
reponame_str INTA Digital (INTA)
collection INTA Digital (INTA)
instname_str Instituto Nacional de Tecnología Agropecuaria
repository.name.fl_str_mv INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria
repository.mail.fl_str_mv tripaldi.nicolas@inta.gob.ar
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score 12.559606

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