Improving accuracy of breeding values by incorporating genomic information in spatial - competition mixed models
- Autores
- Cappa, Eduardo Pablo; El-Kassaby, Yousry A.; Muñoz, Facundo; Garcia, Martin Nahuel; Villalba, Pamela Victoria; Klapste, Jaroslav; Marcucci Poltri, Susana Noemi
- Año de publicación
- 2017
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión aceptada
- Descripción
- Climate change and the increasing demand for sustainable energy resources require urgent strategies to increase the accuracy of selection in tree breeding (associated with higher gain). We investigated the combined pedigree and genomic-based relationship approach and its impact on the accuracy of predicted breeding values using data from 5-year-old Eucalyptus grandis progeny trial. The number of trees that can be genotyped in a tree breeding population is limited; therefore, the combined approach can be a feasible and efficient strategy to increase the genetic gain and provide more accurate predicted breeding values. We calculated the accuracy of predicted breeding values for two growth traits, diameter at breast height and total height, using two evaluation approaches: the combined approach and the classical pedigree-based approach. We also investigated the influence of two different trait heritabilities as well as the inclusion of competition genetic effects or environmental heterogeneity in an individual-tree mixed model on the estimated variance components and accuracy of breeding values. The genomic information of genotyped trees is automatically propagated to all trees with the combined approach, including the non-genotyped mothers. This increased the accuracy of overall breeding values, except for the non-genotyped trees from the competition model. The increase in the accuracy was higher for the total height, the trait with low heritability. The combined approach is a simple, fast, and accurate genomic selection method for genetic evaluation of growth traits in E. grandis and tree species in general. It is simple to implement in a traditional individual-tree mixed model and provides an easy extension to individual-tree mixed models with competition effects and/or environmental heterogeneity.
Inst. de Recursos Biológicos
Fil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: El-Kassaby, Yousry A. University of British Columbia. Faculty of Forestry. Department of Forest and Conservation Sciences; Canada
Fil: Muñoz, Facundo. Institut National de la Recherche Agronomique . Unité Amélioration, Génétique et Physiologie Forestières; Francia
Fil: Garcia, Martin Nahuel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Villalba, Pamela Victoria. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina
Fil: Klapste, Jaroslav. University of British Columbia. Faculty of Forestry. Department of Forest and Conservation Sciences; Canada. Czech University of Life Sciences. Faculty of Forestry and Wood Sciences. Department of Genetics and Physiology of Forest Trees; República Checa
Fil: Marcucci Poltri, Susana Noemi. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina - Fuente
- Molecular breeding 37 : 125. (October 2017)
- Materia
-
Producción Forestal
Eucalyptus Grandis
Forestry Production
Genetics
Plant Breeding
Environment
Fitomejoramiento
Genética
Medio Ambiente - Nivel de accesibilidad
- acceso restringido
- Condiciones de uso
- Repositorio
- Institución
- Instituto Nacional de Tecnología Agropecuaria
- OAI Identificador
- oai:localhost:20.500.12123/1936
Ver los metadatos del registro completo
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Improving accuracy of breeding values by incorporating genomic information in spatial - competition mixed modelsCappa, Eduardo PabloEl-Kassaby, Yousry A.Muñoz, FacundoGarcia, Martin NahuelVillalba, Pamela VictoriaKlapste, JaroslavMarcucci Poltri, Susana NoemiProducción ForestalEucalyptus GrandisForestry ProductionGeneticsPlant BreedingEnvironmentFitomejoramientoGenéticaMedio AmbienteClimate change and the increasing demand for sustainable energy resources require urgent strategies to increase the accuracy of selection in tree breeding (associated with higher gain). We investigated the combined pedigree and genomic-based relationship approach and its impact on the accuracy of predicted breeding values using data from 5-year-old Eucalyptus grandis progeny trial. The number of trees that can be genotyped in a tree breeding population is limited; therefore, the combined approach can be a feasible and efficient strategy to increase the genetic gain and provide more accurate predicted breeding values. We calculated the accuracy of predicted breeding values for two growth traits, diameter at breast height and total height, using two evaluation approaches: the combined approach and the classical pedigree-based approach. We also investigated the influence of two different trait heritabilities as well as the inclusion of competition genetic effects or environmental heterogeneity in an individual-tree mixed model on the estimated variance components and accuracy of breeding values. The genomic information of genotyped trees is automatically propagated to all trees with the combined approach, including the non-genotyped mothers. This increased the accuracy of overall breeding values, except for the non-genotyped trees from the competition model. The increase in the accuracy was higher for the total height, the trait with low heritability. The combined approach is a simple, fast, and accurate genomic selection method for genetic evaluation of growth traits in E. grandis and tree species in general. It is simple to implement in a traditional individual-tree mixed model and provides an easy extension to individual-tree mixed models with competition effects and/or environmental heterogeneity.Inst. de Recursos BiológicosFil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: El-Kassaby, Yousry A. University of British Columbia. Faculty of Forestry. Department of Forest and Conservation Sciences; CanadaFil: Muñoz, Facundo. Institut National de la Recherche Agronomique . Unité Amélioration, Génétique et Physiologie Forestières; FranciaFil: Garcia, Martin Nahuel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaFil: Villalba, Pamela Victoria. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; ArgentinaFil: Klapste, Jaroslav. University of British Columbia. Faculty of Forestry. Department of Forest and Conservation Sciences; Canada. Czech University of Life Sciences. Faculty of Forestry and Wood Sciences. Department of Genetics and Physiology of Forest Trees; República ChecaFil: Marcucci Poltri, Susana Noemi. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina2018-03-02T11:12:51Z2018-03-02T11:12:51Z2017-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/acceptedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttp://hdl.handle.net/20.500.12123/1936https://link.springer.com/article/10.1007/s11032-017-0725-61380-3743 (Print)1572-9788 (Online)https://doi.org/10.1007/s11032-017-0725-6Molecular breeding 37 : 125. (October 2017)reponame:INTA Digital (INTA)instname:Instituto Nacional de Tecnología Agropecuariaenginfo:eu-repo/semantics/restrictedAccess2025-09-29T13:44:15Zoai:localhost:20.500.12123/1936instacron:INTAInstitucionalhttp://repositorio.inta.gob.ar/Organismo científico-tecnológicoNo correspondehttp://repositorio.inta.gob.ar/oai/requesttripaldi.nicolas@inta.gob.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:l2025-09-29 13:44:15.694INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuariafalse |
dc.title.none.fl_str_mv |
Improving accuracy of breeding values by incorporating genomic information in spatial - competition mixed models |
title |
Improving accuracy of breeding values by incorporating genomic information in spatial - competition mixed models |
spellingShingle |
Improving accuracy of breeding values by incorporating genomic information in spatial - competition mixed models Cappa, Eduardo Pablo Producción Forestal Eucalyptus Grandis Forestry Production Genetics Plant Breeding Environment Fitomejoramiento Genética Medio Ambiente |
title_short |
Improving accuracy of breeding values by incorporating genomic information in spatial - competition mixed models |
title_full |
Improving accuracy of breeding values by incorporating genomic information in spatial - competition mixed models |
title_fullStr |
Improving accuracy of breeding values by incorporating genomic information in spatial - competition mixed models |
title_full_unstemmed |
Improving accuracy of breeding values by incorporating genomic information in spatial - competition mixed models |
title_sort |
Improving accuracy of breeding values by incorporating genomic information in spatial - competition mixed models |
dc.creator.none.fl_str_mv |
Cappa, Eduardo Pablo El-Kassaby, Yousry A. Muñoz, Facundo Garcia, Martin Nahuel Villalba, Pamela Victoria Klapste, Jaroslav Marcucci Poltri, Susana Noemi |
author |
Cappa, Eduardo Pablo |
author_facet |
Cappa, Eduardo Pablo El-Kassaby, Yousry A. Muñoz, Facundo Garcia, Martin Nahuel Villalba, Pamela Victoria Klapste, Jaroslav Marcucci Poltri, Susana Noemi |
author_role |
author |
author2 |
El-Kassaby, Yousry A. Muñoz, Facundo Garcia, Martin Nahuel Villalba, Pamela Victoria Klapste, Jaroslav Marcucci Poltri, Susana Noemi |
author2_role |
author author author author author author |
dc.subject.none.fl_str_mv |
Producción Forestal Eucalyptus Grandis Forestry Production Genetics Plant Breeding Environment Fitomejoramiento Genética Medio Ambiente |
topic |
Producción Forestal Eucalyptus Grandis Forestry Production Genetics Plant Breeding Environment Fitomejoramiento Genética Medio Ambiente |
dc.description.none.fl_txt_mv |
Climate change and the increasing demand for sustainable energy resources require urgent strategies to increase the accuracy of selection in tree breeding (associated with higher gain). We investigated the combined pedigree and genomic-based relationship approach and its impact on the accuracy of predicted breeding values using data from 5-year-old Eucalyptus grandis progeny trial. The number of trees that can be genotyped in a tree breeding population is limited; therefore, the combined approach can be a feasible and efficient strategy to increase the genetic gain and provide more accurate predicted breeding values. We calculated the accuracy of predicted breeding values for two growth traits, diameter at breast height and total height, using two evaluation approaches: the combined approach and the classical pedigree-based approach. We also investigated the influence of two different trait heritabilities as well as the inclusion of competition genetic effects or environmental heterogeneity in an individual-tree mixed model on the estimated variance components and accuracy of breeding values. The genomic information of genotyped trees is automatically propagated to all trees with the combined approach, including the non-genotyped mothers. This increased the accuracy of overall breeding values, except for the non-genotyped trees from the competition model. The increase in the accuracy was higher for the total height, the trait with low heritability. The combined approach is a simple, fast, and accurate genomic selection method for genetic evaluation of growth traits in E. grandis and tree species in general. It is simple to implement in a traditional individual-tree mixed model and provides an easy extension to individual-tree mixed models with competition effects and/or environmental heterogeneity. Inst. de Recursos Biológicos Fil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: El-Kassaby, Yousry A. University of British Columbia. Faculty of Forestry. Department of Forest and Conservation Sciences; Canada Fil: Muñoz, Facundo. Institut National de la Recherche Agronomique . Unité Amélioration, Génétique et Physiologie Forestières; Francia Fil: Garcia, Martin Nahuel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Villalba, Pamela Victoria. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina Fil: Klapste, Jaroslav. University of British Columbia. Faculty of Forestry. Department of Forest and Conservation Sciences; Canada. Czech University of Life Sciences. Faculty of Forestry and Wood Sciences. Department of Genetics and Physiology of Forest Trees; República Checa Fil: Marcucci Poltri, Susana Noemi. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología; Argentina |
description |
Climate change and the increasing demand for sustainable energy resources require urgent strategies to increase the accuracy of selection in tree breeding (associated with higher gain). We investigated the combined pedigree and genomic-based relationship approach and its impact on the accuracy of predicted breeding values using data from 5-year-old Eucalyptus grandis progeny trial. The number of trees that can be genotyped in a tree breeding population is limited; therefore, the combined approach can be a feasible and efficient strategy to increase the genetic gain and provide more accurate predicted breeding values. We calculated the accuracy of predicted breeding values for two growth traits, diameter at breast height and total height, using two evaluation approaches: the combined approach and the classical pedigree-based approach. We also investigated the influence of two different trait heritabilities as well as the inclusion of competition genetic effects or environmental heterogeneity in an individual-tree mixed model on the estimated variance components and accuracy of breeding values. The genomic information of genotyped trees is automatically propagated to all trees with the combined approach, including the non-genotyped mothers. This increased the accuracy of overall breeding values, except for the non-genotyped trees from the competition model. The increase in the accuracy was higher for the total height, the trait with low heritability. The combined approach is a simple, fast, and accurate genomic selection method for genetic evaluation of growth traits in E. grandis and tree species in general. It is simple to implement in a traditional individual-tree mixed model and provides an easy extension to individual-tree mixed models with competition effects and/or environmental heterogeneity. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-10 2018-03-02T11:12:51Z 2018-03-02T11:12:51Z |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/acceptedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
acceptedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/20.500.12123/1936 https://link.springer.com/article/10.1007/s11032-017-0725-6 1380-3743 (Print) 1572-9788 (Online) https://doi.org/10.1007/s11032-017-0725-6 |
url |
http://hdl.handle.net/20.500.12123/1936 https://link.springer.com/article/10.1007/s11032-017-0725-6 https://doi.org/10.1007/s11032-017-0725-6 |
identifier_str_mv |
1380-3743 (Print) 1572-9788 (Online) |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/restrictedAccess |
eu_rights_str_mv |
restrictedAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
Molecular breeding 37 : 125. (October 2017) reponame:INTA Digital (INTA) instname:Instituto Nacional de Tecnología Agropecuaria |
reponame_str |
INTA Digital (INTA) |
collection |
INTA Digital (INTA) |
instname_str |
Instituto Nacional de Tecnología Agropecuaria |
repository.name.fl_str_mv |
INTA Digital (INTA) - Instituto Nacional de Tecnología Agropecuaria |
repository.mail.fl_str_mv |
tripaldi.nicolas@inta.gob.ar |
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1844619120145858560 |
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12.559606 |