Dissecting maize diversity in lowland South America : genetic structure and geographic distribution models

Autores
Bracco, Mariana; Cascales, Jimena; Cámara Hernández, Julián A.; Poggio, Lidia; Gottlieb, Alexandra M.; Lia, Verónica V.
Año de publicación
2016
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Fil: Bracco, Mariana. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
Fil: Bracco, Mariana. Universidad Nacional del Noroeste de la Provincia de Buenos Aires. Escuela de Ciencias Agrarias, Naturales y Ambientales. Pergamino, Buenos Aires, Argentina.
Fil: Cascales, Jimena. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
Fil: Cascales, Jimena. CONICET. Buenos Aires, Argentina.
Fil: Cámara Hernández, Julián A. Universidad de Buenos Aires. Facultad de Agronomía. Buenos Aires, Argentina.
Fil: Poggio, Lidia. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
Fil: Poggio, Lidia. CONICET. Buenos Aires, Argentina.
Fil: Gottlieb, Alexandra M. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
Fil: Gottlieb, Alexandra M. CONICET. Buenos Aires, Argentina.
Fil: Lia, Verónica V. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
Fil: Lia, Verónica V. CONICET. Buenos Aires, Argentina.
Fil: Lia, Verónica V. Instituto de Biotecnología, CICVyA, INTA. Hurlingham, Buenos Aires, Argentina.Buenos Aires, Argentina.
Background: Maize landraces from South America have traditionally been assigned to two main categories: Andean and Tropical Lowland germplasm. However, the genetic structure and affiliations of the lowland gene pools have been difficult to assess due to limited sampling and the lack of comparative analysis. Here, we examined SSR and Adh2 sequence variation in a diverse sample of maize landraces from lowland middle South America, and performed a comprehensive integrative analysis of population structure and diversity including already published data of archaeological and extant specimens from the Americas. Geographic distribution models were used to explore the relationship between environmental factors and the observed genetic structure. Results: Bayesian and multivariate analyses of population structure showed the existence of two previously overlooked lowland gene pools associated with Guaraní indigenous communities of middle South America. The singularity of this germplasm was also evidenced by the frequency distribution of microsatellite repeat motifs of the Adh2 locus and the distinct spatial pattern inferred from geographic distribution models. Conclusion: Our results challenge the prevailing view that lowland middle South America is just a contact zone between Andean and Tropical Lowland germplasm and highlight the occurrence of a unique, locally adapted gene pool. This information is relevant for the conservation and utilization of maize genetic resources, as well as for a better understanding of environment-genotype associations.
Fuente
BMC Plant Biology
Vol.16
Art.186
http://www.biomedcentral.com/
Materia
GENETIC DIVERSITY
GEOGRAPHIC DISTRIBUTION MODELS
GUARANI COMMUNITIES
LOWLAND SOUTH AMERICA
MAIZE LANDRACES
Nivel de accesibilidad
acceso abierto
Condiciones de uso
acceso abierto
Repositorio
FAUBA Digital (UBA-FAUBA)
Institución
Universidad de Buenos Aires. Facultad de Agronomía
OAI Identificador
snrd:2016bracco

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oai_identifier_str snrd:2016bracco
network_acronym_str FAUBA
repository_id_str 2729
network_name_str FAUBA Digital (UBA-FAUBA)
spelling Dissecting maize diversity in lowland South America : genetic structure and geographic distribution modelsBracco, MarianaCascales, JimenaCámara Hernández, Julián A.Poggio, LidiaGottlieb, Alexandra M.Lia, Verónica V.GENETIC DIVERSITYGEOGRAPHIC DISTRIBUTION MODELSGUARANI COMMUNITIESLOWLAND SOUTH AMERICAMAIZE LANDRACESFil: Bracco, Mariana. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.Fil: Bracco, Mariana. Universidad Nacional del Noroeste de la Provincia de Buenos Aires. Escuela de Ciencias Agrarias, Naturales y Ambientales. Pergamino, Buenos Aires, Argentina.Fil: Cascales, Jimena. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.Fil: Cascales, Jimena. CONICET. Buenos Aires, Argentina.Fil: Cámara Hernández, Julián A. Universidad de Buenos Aires. Facultad de Agronomía. Buenos Aires, Argentina.Fil: Poggio, Lidia. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.Fil: Poggio, Lidia. CONICET. Buenos Aires, Argentina.Fil: Gottlieb, Alexandra M. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.Fil: Gottlieb, Alexandra M. CONICET. Buenos Aires, Argentina.Fil: Lia, Verónica V. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.Fil: Lia, Verónica V. CONICET. Buenos Aires, Argentina.Fil: Lia, Verónica V. Instituto de Biotecnología, CICVyA, INTA. Hurlingham, Buenos Aires, Argentina.Buenos Aires, Argentina.Background: Maize landraces from South America have traditionally been assigned to two main categories: Andean and Tropical Lowland germplasm. However, the genetic structure and affiliations of the lowland gene pools have been difficult to assess due to limited sampling and the lack of comparative analysis. Here, we examined SSR and Adh2 sequence variation in a diverse sample of maize landraces from lowland middle South America, and performed a comprehensive integrative analysis of population structure and diversity including already published data of archaeological and extant specimens from the Americas. Geographic distribution models were used to explore the relationship between environmental factors and the observed genetic structure. Results: Bayesian and multivariate analyses of population structure showed the existence of two previously overlooked lowland gene pools associated with Guaraní indigenous communities of middle South America. The singularity of this germplasm was also evidenced by the frequency distribution of microsatellite repeat motifs of the Adh2 locus and the distinct spatial pattern inferred from geographic distribution models. Conclusion: Our results challenge the prevailing view that lowland middle South America is just a contact zone between Andean and Tropical Lowland germplasm and highlight the occurrence of a unique, locally adapted gene pool. This information is relevant for the conservation and utilization of maize genetic resources, as well as for a better understanding of environment-genotype associations.2016info:eu-repo/semantics/articlepublishedVersioninfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfdoi:10.1186/s12870-016-0874-5issn:1471-2229http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2016braccoBMC Plant BiologyVol.16Art.186http://www.biomedcentral.com/reponame:FAUBA Digital (UBA-FAUBA)instname:Universidad de Buenos Aires. Facultad de Agronomíaeng1000002South America (continent)info:eu-repo/semantics/openAccessopenAccesshttp://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section42025-10-23T11:15:18Zsnrd:2016braccoinstacron:UBA-FAUBAInstitucionalhttp://ri.agro.uba.ar/Universidad públicaNo correspondehttp://ri.agro.uba.ar/greenstone3/oaiserver?verb=ListSetsmartino@agro.uba.ar;berasa@agro.uba.ar ArgentinaNo correspondeNo correspondeNo correspondeopendoar:27292025-10-23 11:15:19.012FAUBA Digital (UBA-FAUBA) - Universidad de Buenos Aires. Facultad de Agronomíafalse
dc.title.none.fl_str_mv Dissecting maize diversity in lowland South America : genetic structure and geographic distribution models
title Dissecting maize diversity in lowland South America : genetic structure and geographic distribution models
spellingShingle Dissecting maize diversity in lowland South America : genetic structure and geographic distribution models
Bracco, Mariana
GENETIC DIVERSITY
GEOGRAPHIC DISTRIBUTION MODELS
GUARANI COMMUNITIES
LOWLAND SOUTH AMERICA
MAIZE LANDRACES
title_short Dissecting maize diversity in lowland South America : genetic structure and geographic distribution models
title_full Dissecting maize diversity in lowland South America : genetic structure and geographic distribution models
title_fullStr Dissecting maize diversity in lowland South America : genetic structure and geographic distribution models
title_full_unstemmed Dissecting maize diversity in lowland South America : genetic structure and geographic distribution models
title_sort Dissecting maize diversity in lowland South America : genetic structure and geographic distribution models
dc.creator.none.fl_str_mv Bracco, Mariana
Cascales, Jimena
Cámara Hernández, Julián A.
Poggio, Lidia
Gottlieb, Alexandra M.
Lia, Verónica V.
author Bracco, Mariana
author_facet Bracco, Mariana
Cascales, Jimena
Cámara Hernández, Julián A.
Poggio, Lidia
Gottlieb, Alexandra M.
Lia, Verónica V.
author_role author
author2 Cascales, Jimena
Cámara Hernández, Julián A.
Poggio, Lidia
Gottlieb, Alexandra M.
Lia, Verónica V.
author2_role author
author
author
author
author
dc.subject.none.fl_str_mv GENETIC DIVERSITY
GEOGRAPHIC DISTRIBUTION MODELS
GUARANI COMMUNITIES
LOWLAND SOUTH AMERICA
MAIZE LANDRACES
topic GENETIC DIVERSITY
GEOGRAPHIC DISTRIBUTION MODELS
GUARANI COMMUNITIES
LOWLAND SOUTH AMERICA
MAIZE LANDRACES
dc.description.none.fl_txt_mv Fil: Bracco, Mariana. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
Fil: Bracco, Mariana. Universidad Nacional del Noroeste de la Provincia de Buenos Aires. Escuela de Ciencias Agrarias, Naturales y Ambientales. Pergamino, Buenos Aires, Argentina.
Fil: Cascales, Jimena. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
Fil: Cascales, Jimena. CONICET. Buenos Aires, Argentina.
Fil: Cámara Hernández, Julián A. Universidad de Buenos Aires. Facultad de Agronomía. Buenos Aires, Argentina.
Fil: Poggio, Lidia. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
Fil: Poggio, Lidia. CONICET. Buenos Aires, Argentina.
Fil: Gottlieb, Alexandra M. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
Fil: Gottlieb, Alexandra M. CONICET. Buenos Aires, Argentina.
Fil: Lia, Verónica V. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
Fil: Lia, Verónica V. CONICET. Buenos Aires, Argentina.
Fil: Lia, Verónica V. Instituto de Biotecnología, CICVyA, INTA. Hurlingham, Buenos Aires, Argentina.Buenos Aires, Argentina.
Background: Maize landraces from South America have traditionally been assigned to two main categories: Andean and Tropical Lowland germplasm. However, the genetic structure and affiliations of the lowland gene pools have been difficult to assess due to limited sampling and the lack of comparative analysis. Here, we examined SSR and Adh2 sequence variation in a diverse sample of maize landraces from lowland middle South America, and performed a comprehensive integrative analysis of population structure and diversity including already published data of archaeological and extant specimens from the Americas. Geographic distribution models were used to explore the relationship between environmental factors and the observed genetic structure. Results: Bayesian and multivariate analyses of population structure showed the existence of two previously overlooked lowland gene pools associated with Guaraní indigenous communities of middle South America. The singularity of this germplasm was also evidenced by the frequency distribution of microsatellite repeat motifs of the Adh2 locus and the distinct spatial pattern inferred from geographic distribution models. Conclusion: Our results challenge the prevailing view that lowland middle South America is just a contact zone between Andean and Tropical Lowland germplasm and highlight the occurrence of a unique, locally adapted gene pool. This information is relevant for the conservation and utilization of maize genetic resources, as well as for a better understanding of environment-genotype associations.
description Fil: Bracco, Mariana. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Buenos Aires, Argentina.
publishDate 2016
dc.date.none.fl_str_mv 2016
dc.type.none.fl_str_mv info:eu-repo/semantics/article
publishedVersion
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv doi:10.1186/s12870-016-0874-5
issn:1471-2229
http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2016bracco
identifier_str_mv doi:10.1186/s12870-016-0874-5
issn:1471-2229
url http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2016bracco
dc.language.none.fl_str_mv eng
language eng
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
openAccess
http://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section4
eu_rights_str_mv openAccess
rights_invalid_str_mv openAccess
http://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section4
dc.format.none.fl_str_mv application/pdf
dc.coverage.none.fl_str_mv 1000002
South America (continent)
dc.source.none.fl_str_mv BMC Plant Biology
Vol.16
Art.186
http://www.biomedcentral.com/
reponame:FAUBA Digital (UBA-FAUBA)
instname:Universidad de Buenos Aires. Facultad de Agronomía
reponame_str FAUBA Digital (UBA-FAUBA)
collection FAUBA Digital (UBA-FAUBA)
instname_str Universidad de Buenos Aires. Facultad de Agronomía
repository.name.fl_str_mv FAUBA Digital (UBA-FAUBA) - Universidad de Buenos Aires. Facultad de Agronomía
repository.mail.fl_str_mv martino@agro.uba.ar;berasa@agro.uba.ar
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score 12.982451