Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution

Autores
Chunyan, Li; Olave, Melisa; Hou, Yali; Geng, Qi; Schneider, Ralf; Zeixa, Gao; Xiaolong, Tu; Xin, Wang; Furong, Qi; Nater, Alexander; Kautt, Andreas F.; Wan, Shiming; Yanhong, Zhang; Yali, Liu; Huixian, Zhang; Bo, Zhang; Hao, Zhang; Meng, Qu ,; Shuaishuai, Liu; Zeyu, Chen; Zhong, Jia; Zhang, He; Meng, Lingfeng; Wang, Kai; Yin, Jianping; Huang, Liangmin; Venkatesh, Byrappa; Meyer, Axel; Lu, Xuemei; Lin, Qiang
Año de publicación
2021
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Seahorses have a circum-global distribution in tropical to temperate coastal waters. Yet, seahorses show many adaptations for a sedentary, cryptic lifestyle: they require specific habitats, such as seagrass, kelp or coral reefs, lack pelvic and caudal fins, and give birth to directly developed offspring without pronounced pelagic larval stage, rendering long-range dispersal by conventional means inefficient. Here we investigate seahorses’ worldwide dispersal and biogeographic patterns based on a de novo genome assembly of Hippocampus erectus as well as 358 re-sequenced genomes from 21 species. Seahorses evolved in the late Oligocene and subsequent circum-global colonization routes are identified and linked to changing dynamics in ocean currents and paleo-temporal seaway openings. Furthermore, the genetic basis of the recurring “bony spines” adaptive phenotype is linked to independent substitutions in a key developmental gene. Analyses thus suggest that rafting via ocean currents compensates for poor dispersal and rapid adaptation facilitates colonizing new habitats.
Fil: Chunyan, Li. Southern Marine Science and Engineering Guangdong Laboratory; China. Pilot National Laboratory for Marine Science and Technology; China. Chinese Academy of Sciences; República de China
Fil: Olave, Melisa. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto Argentino de Investigaciones de las Zonas Áridas. Provincia de Mendoza. Instituto Argentino de Investigaciones de las Zonas Áridas. Universidad Nacional de Cuyo. Instituto Argentino de Investigaciones de las Zonas Áridas; Argentina. University of Konstanz; Alemania
Fil: Hou, Yali. Chinese Academy of Sciences; República de China
Fil: Geng, Qi. Chinese Academy of Sciences; República de China. Southern Marine Science and Engineering Guangdong Laboratory; China
Fil: Schneider, Ralf. University Of Konstanz; Alemania. Helmholtz Centre for Ocean Research Kie; Alemania
Fil: Zeixa, Gao. Huazhong Agricultural University; China
Fil: Xiaolong, Tu. Allwegene Technologies ; China
Fil: Xin, Wang. Chinese Academy of Sciences; República de China
Fil: Furong, Qi. China National Center for Bioinformation; China. University of Chinese Academy of Sciences; China
Fil: Nater, Alexander. University of Konstanz; Alemania
Fil: Kautt, Andreas F.. University of Konstanz; Alemania. Harvard University; Estados Unidos
Fil: Wan, Shiming. Chinese Academy of Sciences; República de China
Fil: Yanhong, Zhang. Chinese Academy of Sciences; República de China
Fil: Yali, Liu. Chinese Academy of Sciences; República de China
Fil: Huixian, Zhang. Chinese Academy of Sciences; República de China
Fil: Bo, Zhang. Chinese Academy of Sciences; República de China
Fil: Hao, Zhang. Chinese Academy of Sciences; República de China
Fil: Meng, Qu ,. Chinese Academy of Sciences; República de China
Fil: Shuaishuai, Liu. Chinese Academy of Sciences; República de China
Fil: Zeyu, Chen. Chinese Academy of Sciences; República de China. University of Chinese Academy of Sciences; China
Fil: Zhong, Jia. Chinese Academy of Sciences; República de China
Fil: Zhang, He. BGI-Shenzhen; China
Fil: Meng, Lingfeng. BGI-Shenzhen; China
Fil: Wang, Kai. Ludong University; China
Fil: Yin, Jianping. Chinese Academy of Sciences; República de China
Fil: Huang, Liangmin. Chinese Academy of Sciences; República de China. University of Chinese Academy of Sciences; China
Fil: Venkatesh, Byrappa. Institute of Molecular and Cell Biology; Singapur
Fil: Meyer, Axel. University of Konstanz; Alemania
Fil: Lu, Xuemei. Chinese Academy of Sciences; República de China
Fil: Lin, Qiang. Chinese Academy of Sciences; República de China. Southern Marine Science and Engineering Guangdong Laboratory; China. Pilot National Laboratory for Marine Science and Technology; China. University of Chinese Academy of Sciences; China
Materia
SEAHORSES
DIVERSIFICATION
BIOGEOGRAPHY
CONVERGENCE
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/172027
Acceder
id CONICETDig_b125f3b63014fed0ed763c30915ceaf2
oai_identifier_str oai:ri.conicet.gov.ar:11336/172027
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolutionChunyan, LiOlave, MelisaHou, YaliGeng, QiSchneider, RalfZeixa, GaoXiaolong, TuXin, WangFurong, QiNater, AlexanderKautt, Andreas F.Wan, ShimingYanhong, ZhangYali, LiuHuixian, ZhangBo, ZhangHao, ZhangMeng, Qu ,Shuaishuai, LiuZeyu, ChenZhong, JiaZhang, HeMeng, LingfengWang, KaiYin, JianpingHuang, LiangminVenkatesh, ByrappaMeyer, AxelLu, XuemeiLin, QiangSEAHORSESDIVERSIFICATIONBIOGEOGRAPHYCONVERGENCEhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Seahorses have a circum-global distribution in tropical to temperate coastal waters. Yet, seahorses show many adaptations for a sedentary, cryptic lifestyle: they require specific habitats, such as seagrass, kelp or coral reefs, lack pelvic and caudal fins, and give birth to directly developed offspring without pronounced pelagic larval stage, rendering long-range dispersal by conventional means inefficient. Here we investigate seahorses’ worldwide dispersal and biogeographic patterns based on a de novo genome assembly of Hippocampus erectus as well as 358 re-sequenced genomes from 21 species. Seahorses evolved in the late Oligocene and subsequent circum-global colonization routes are identified and linked to changing dynamics in ocean currents and paleo-temporal seaway openings. Furthermore, the genetic basis of the recurring “bony spines” adaptive phenotype is linked to independent substitutions in a key developmental gene. Analyses thus suggest that rafting via ocean currents compensates for poor dispersal and rapid adaptation facilitates colonizing new habitats.Fil: Chunyan, Li. Southern Marine Science and Engineering Guangdong Laboratory; China. Pilot National Laboratory for Marine Science and Technology; China. Chinese Academy of Sciences; República de ChinaFil: Olave, Melisa. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto Argentino de Investigaciones de las Zonas Áridas. Provincia de Mendoza. Instituto Argentino de Investigaciones de las Zonas Áridas. Universidad Nacional de Cuyo. Instituto Argentino de Investigaciones de las Zonas Áridas; Argentina. University of Konstanz; AlemaniaFil: Hou, Yali. Chinese Academy of Sciences; República de ChinaFil: Geng, Qi. Chinese Academy of Sciences; República de China. Southern Marine Science and Engineering Guangdong Laboratory; ChinaFil: Schneider, Ralf. University Of Konstanz; Alemania. Helmholtz Centre for Ocean Research Kie; AlemaniaFil: Zeixa, Gao. Huazhong Agricultural University; ChinaFil: Xiaolong, Tu. Allwegene Technologies ; ChinaFil: Xin, Wang. Chinese Academy of Sciences; República de ChinaFil: Furong, Qi. China National Center for Bioinformation; China. University of Chinese Academy of Sciences; ChinaFil: Nater, Alexander. University of Konstanz; AlemaniaFil: Kautt, Andreas F.. University of Konstanz; Alemania. Harvard University; Estados UnidosFil: Wan, Shiming. Chinese Academy of Sciences; República de ChinaFil: Yanhong, Zhang. Chinese Academy of Sciences; República de ChinaFil: Yali, Liu. Chinese Academy of Sciences; República de ChinaFil: Huixian, Zhang. Chinese Academy of Sciences; República de ChinaFil: Bo, Zhang. Chinese Academy of Sciences; República de ChinaFil: Hao, Zhang. Chinese Academy of Sciences; República de ChinaFil: Meng, Qu ,. Chinese Academy of Sciences; República de ChinaFil: Shuaishuai, Liu. Chinese Academy of Sciences; República de ChinaFil: Zeyu, Chen. Chinese Academy of Sciences; República de China. University of Chinese Academy of Sciences; ChinaFil: Zhong, Jia. Chinese Academy of Sciences; República de ChinaFil: Zhang, He. BGI-Shenzhen; ChinaFil: Meng, Lingfeng. BGI-Shenzhen; ChinaFil: Wang, Kai. Ludong University; ChinaFil: Yin, Jianping. Chinese Academy of Sciences; República de ChinaFil: Huang, Liangmin. Chinese Academy of Sciences; República de China. University of Chinese Academy of Sciences; ChinaFil: Venkatesh, Byrappa. Institute of Molecular and Cell Biology; SingapurFil: Meyer, Axel. University of Konstanz; AlemaniaFil: Lu, Xuemei. Chinese Academy of Sciences; República de ChinaFil: Lin, Qiang. Chinese Academy of Sciences; República de China. Southern Marine Science and Engineering Guangdong Laboratory; China. Pilot National Laboratory for Marine Science and Technology; China. University of Chinese Academy of Sciences; ChinaNature Research2021-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/172027Chunyan, Li; Olave, Melisa; Hou, Yali; Geng, Qi; Schneider, Ralf; et al.; Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution; Nature Research; Nature Communications; 12; 1; 1-2021; 1-112041-1723CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41467-021-21379-xinfo:eu-repo/semantics/altIdentifier/doi/10.1038/s41467-021-21379-xinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T10:01:34Zoai:ri.conicet.gov.ar:11336/172027instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 10:01:34.991CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
title Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
spellingShingle Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
Chunyan, Li
SEAHORSES
DIVERSIFICATION
BIOGEOGRAPHY
CONVERGENCE
title_short Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
title_full Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
title_fullStr Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
title_full_unstemmed Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
title_sort Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution
dc.creator.none.fl_str_mv Chunyan, Li
Olave, Melisa
Hou, Yali
Geng, Qi
Schneider, Ralf
Zeixa, Gao
Xiaolong, Tu
Xin, Wang
Furong, Qi
Nater, Alexander
Kautt, Andreas F.
Wan, Shiming
Yanhong, Zhang
Yali, Liu
Huixian, Zhang
Bo, Zhang
Hao, Zhang
Meng, Qu ,
Shuaishuai, Liu
Zeyu, Chen
Zhong, Jia
Zhang, He
Meng, Lingfeng
Wang, Kai
Yin, Jianping
Huang, Liangmin
Venkatesh, Byrappa
Meyer, Axel
Lu, Xuemei
Lin, Qiang
author Chunyan, Li
author_facet Chunyan, Li
Olave, Melisa
Hou, Yali
Geng, Qi
Schneider, Ralf
Zeixa, Gao
Xiaolong, Tu
Xin, Wang
Furong, Qi
Nater, Alexander
Kautt, Andreas F.
Wan, Shiming
Yanhong, Zhang
Yali, Liu
Huixian, Zhang
Bo, Zhang
Hao, Zhang
Meng, Qu ,
Shuaishuai, Liu
Zeyu, Chen
Zhong, Jia
Zhang, He
Meng, Lingfeng
Wang, Kai
Yin, Jianping
Huang, Liangmin
Venkatesh, Byrappa
Meyer, Axel
Lu, Xuemei
Lin, Qiang
author_role author
author2 Olave, Melisa
Hou, Yali
Geng, Qi
Schneider, Ralf
Zeixa, Gao
Xiaolong, Tu
Xin, Wang
Furong, Qi
Nater, Alexander
Kautt, Andreas F.
Wan, Shiming
Yanhong, Zhang
Yali, Liu
Huixian, Zhang
Bo, Zhang
Hao, Zhang
Meng, Qu ,
Shuaishuai, Liu
Zeyu, Chen
Zhong, Jia
Zhang, He
Meng, Lingfeng
Wang, Kai
Yin, Jianping
Huang, Liangmin
Venkatesh, Byrappa
Meyer, Axel
Lu, Xuemei
Lin, Qiang
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv SEAHORSES
DIVERSIFICATION
BIOGEOGRAPHY
CONVERGENCE
topic SEAHORSES
DIVERSIFICATION
BIOGEOGRAPHY
CONVERGENCE
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Seahorses have a circum-global distribution in tropical to temperate coastal waters. Yet, seahorses show many adaptations for a sedentary, cryptic lifestyle: they require specific habitats, such as seagrass, kelp or coral reefs, lack pelvic and caudal fins, and give birth to directly developed offspring without pronounced pelagic larval stage, rendering long-range dispersal by conventional means inefficient. Here we investigate seahorses’ worldwide dispersal and biogeographic patterns based on a de novo genome assembly of Hippocampus erectus as well as 358 re-sequenced genomes from 21 species. Seahorses evolved in the late Oligocene and subsequent circum-global colonization routes are identified and linked to changing dynamics in ocean currents and paleo-temporal seaway openings. Furthermore, the genetic basis of the recurring “bony spines” adaptive phenotype is linked to independent substitutions in a key developmental gene. Analyses thus suggest that rafting via ocean currents compensates for poor dispersal and rapid adaptation facilitates colonizing new habitats.
Fil: Chunyan, Li. Southern Marine Science and Engineering Guangdong Laboratory; China. Pilot National Laboratory for Marine Science and Technology; China. Chinese Academy of Sciences; República de China
Fil: Olave, Melisa. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto Argentino de Investigaciones de las Zonas Áridas. Provincia de Mendoza. Instituto Argentino de Investigaciones de las Zonas Áridas. Universidad Nacional de Cuyo. Instituto Argentino de Investigaciones de las Zonas Áridas; Argentina. University of Konstanz; Alemania
Fil: Hou, Yali. Chinese Academy of Sciences; República de China
Fil: Geng, Qi. Chinese Academy of Sciences; República de China. Southern Marine Science and Engineering Guangdong Laboratory; China
Fil: Schneider, Ralf. University Of Konstanz; Alemania. Helmholtz Centre for Ocean Research Kie; Alemania
Fil: Zeixa, Gao. Huazhong Agricultural University; China
Fil: Xiaolong, Tu. Allwegene Technologies ; China
Fil: Xin, Wang. Chinese Academy of Sciences; República de China
Fil: Furong, Qi. China National Center for Bioinformation; China. University of Chinese Academy of Sciences; China
Fil: Nater, Alexander. University of Konstanz; Alemania
Fil: Kautt, Andreas F.. University of Konstanz; Alemania. Harvard University; Estados Unidos
Fil: Wan, Shiming. Chinese Academy of Sciences; República de China
Fil: Yanhong, Zhang. Chinese Academy of Sciences; República de China
Fil: Yali, Liu. Chinese Academy of Sciences; República de China
Fil: Huixian, Zhang. Chinese Academy of Sciences; República de China
Fil: Bo, Zhang. Chinese Academy of Sciences; República de China
Fil: Hao, Zhang. Chinese Academy of Sciences; República de China
Fil: Meng, Qu ,. Chinese Academy of Sciences; República de China
Fil: Shuaishuai, Liu. Chinese Academy of Sciences; República de China
Fil: Zeyu, Chen. Chinese Academy of Sciences; República de China. University of Chinese Academy of Sciences; China
Fil: Zhong, Jia. Chinese Academy of Sciences; República de China
Fil: Zhang, He. BGI-Shenzhen; China
Fil: Meng, Lingfeng. BGI-Shenzhen; China
Fil: Wang, Kai. Ludong University; China
Fil: Yin, Jianping. Chinese Academy of Sciences; República de China
Fil: Huang, Liangmin. Chinese Academy of Sciences; República de China. University of Chinese Academy of Sciences; China
Fil: Venkatesh, Byrappa. Institute of Molecular and Cell Biology; Singapur
Fil: Meyer, Axel. University of Konstanz; Alemania
Fil: Lu, Xuemei. Chinese Academy of Sciences; República de China
Fil: Lin, Qiang. Chinese Academy of Sciences; República de China. Southern Marine Science and Engineering Guangdong Laboratory; China. Pilot National Laboratory for Marine Science and Technology; China. University of Chinese Academy of Sciences; China
description Seahorses have a circum-global distribution in tropical to temperate coastal waters. Yet, seahorses show many adaptations for a sedentary, cryptic lifestyle: they require specific habitats, such as seagrass, kelp or coral reefs, lack pelvic and caudal fins, and give birth to directly developed offspring without pronounced pelagic larval stage, rendering long-range dispersal by conventional means inefficient. Here we investigate seahorses’ worldwide dispersal and biogeographic patterns based on a de novo genome assembly of Hippocampus erectus as well as 358 re-sequenced genomes from 21 species. Seahorses evolved in the late Oligocene and subsequent circum-global colonization routes are identified and linked to changing dynamics in ocean currents and paleo-temporal seaway openings. Furthermore, the genetic basis of the recurring “bony spines” adaptive phenotype is linked to independent substitutions in a key developmental gene. Analyses thus suggest that rafting via ocean currents compensates for poor dispersal and rapid adaptation facilitates colonizing new habitats.
publishDate 2021
dc.date.none.fl_str_mv 2021-01
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/172027
Chunyan, Li; Olave, Melisa; Hou, Yali; Geng, Qi; Schneider, Ralf; et al.; Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution; Nature Research; Nature Communications; 12; 1; 1-2021; 1-11
2041-1723
CONICET Digital
CONICET
url http://hdl.handle.net/11336/172027
identifier_str_mv Chunyan, Li; Olave, Melisa; Hou, Yali; Geng, Qi; Schneider, Ralf; et al.; Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution; Nature Research; Nature Communications; 12; 1; 1-2021; 1-11
2041-1723
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://www.nature.com/articles/s41467-021-21379-x
info:eu-repo/semantics/altIdentifier/doi/10.1038/s41467-021-21379-x
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Nature Research
publisher.none.fl_str_mv Nature Research
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.13397

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