A very simple and fast way to access and validate algorithms in reproducible research
- Autores
- Stegmayer, Georgina; Pividori, Milton Damián; Milone, Diego Humberto
- Año de publicación
- 2016
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- The reproducibility of research in bioinformatics refers to the notion that new methodologies/ algorithms and scientific claims have to be published together with their data and source code, in a way that other researchers may verify the findings to further build more knowledge upon them. The replication and corroboration of research results are key to the scientific process and many journals are discussing the matter nowadays, taking concrete steps in this direction. In this journal itself, a very recent opinion note has appeared highlighting the increasing importance of this topic in bioinformatics and computational biology, inviting the community to further discuss the matter. In agreement with that article, we would like to propose here another step into that direction with a tool that allows the automatic generation of a web interface, named web-demo, directly from source code in a very simple and straightforward way. We believe this contribution can help make research not only reproducible but also more easily accessible. A web-demo associated to a published paper can accelerate an algorithm validation with real data, wide-spreading its use with just a few clicks.
Fil: Stegmayer, Georgina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; Argentina
Fil: Pividori, Milton Damián. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; Argentina
Fil: Milone, Diego Humberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; Argentina - Materia
-
REPRODUCIBLE RESEARCH
WEB-DEMO
OPEN-SOURCE - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/47055
Ver los metadatos del registro completo
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A very simple and fast way to access and validate algorithms in reproducible researchStegmayer, GeorginaPividori, Milton DamiánMilone, Diego HumbertoREPRODUCIBLE RESEARCHWEB-DEMOOPEN-SOURCEhttps://purl.org/becyt/ford/1.2https://purl.org/becyt/ford/1The reproducibility of research in bioinformatics refers to the notion that new methodologies/ algorithms and scientific claims have to be published together with their data and source code, in a way that other researchers may verify the findings to further build more knowledge upon them. The replication and corroboration of research results are key to the scientific process and many journals are discussing the matter nowadays, taking concrete steps in this direction. In this journal itself, a very recent opinion note has appeared highlighting the increasing importance of this topic in bioinformatics and computational biology, inviting the community to further discuss the matter. In agreement with that article, we would like to propose here another step into that direction with a tool that allows the automatic generation of a web interface, named web-demo, directly from source code in a very simple and straightforward way. We believe this contribution can help make research not only reproducible but also more easily accessible. A web-demo associated to a published paper can accelerate an algorithm validation with real data, wide-spreading its use with just a few clicks.Fil: Stegmayer, Georgina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; ArgentinaFil: Pividori, Milton Damián. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; ArgentinaFil: Milone, Diego Humberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; ArgentinaOxford University Press2016-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/47055Stegmayer, Georgina; Pividori, Milton Damián; Milone, Diego Humberto; A very simple and fast way to access and validate algorithms in reproducible research; Oxford University Press; Briefings In Bioinformatics; 17; 1; 1-2016; 180-1831467-5463CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://bib.oxfordjournals.org/content/17/1/180.abstract?etocinfo:eu-repo/semantics/altIdentifier/doi/10.1093/bib/bbv054info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T10:04:16Zoai:ri.conicet.gov.ar:11336/47055instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 10:04:16.376CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
A very simple and fast way to access and validate algorithms in reproducible research |
title |
A very simple and fast way to access and validate algorithms in reproducible research |
spellingShingle |
A very simple and fast way to access and validate algorithms in reproducible research Stegmayer, Georgina REPRODUCIBLE RESEARCH WEB-DEMO OPEN-SOURCE |
title_short |
A very simple and fast way to access and validate algorithms in reproducible research |
title_full |
A very simple and fast way to access and validate algorithms in reproducible research |
title_fullStr |
A very simple and fast way to access and validate algorithms in reproducible research |
title_full_unstemmed |
A very simple and fast way to access and validate algorithms in reproducible research |
title_sort |
A very simple and fast way to access and validate algorithms in reproducible research |
dc.creator.none.fl_str_mv |
Stegmayer, Georgina Pividori, Milton Damián Milone, Diego Humberto |
author |
Stegmayer, Georgina |
author_facet |
Stegmayer, Georgina Pividori, Milton Damián Milone, Diego Humberto |
author_role |
author |
author2 |
Pividori, Milton Damián Milone, Diego Humberto |
author2_role |
author author |
dc.subject.none.fl_str_mv |
REPRODUCIBLE RESEARCH WEB-DEMO OPEN-SOURCE |
topic |
REPRODUCIBLE RESEARCH WEB-DEMO OPEN-SOURCE |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.2 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
The reproducibility of research in bioinformatics refers to the notion that new methodologies/ algorithms and scientific claims have to be published together with their data and source code, in a way that other researchers may verify the findings to further build more knowledge upon them. The replication and corroboration of research results are key to the scientific process and many journals are discussing the matter nowadays, taking concrete steps in this direction. In this journal itself, a very recent opinion note has appeared highlighting the increasing importance of this topic in bioinformatics and computational biology, inviting the community to further discuss the matter. In agreement with that article, we would like to propose here another step into that direction with a tool that allows the automatic generation of a web interface, named web-demo, directly from source code in a very simple and straightforward way. We believe this contribution can help make research not only reproducible but also more easily accessible. A web-demo associated to a published paper can accelerate an algorithm validation with real data, wide-spreading its use with just a few clicks. Fil: Stegmayer, Georgina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; Argentina Fil: Pividori, Milton Damián. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; Argentina Fil: Milone, Diego Humberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; Argentina |
description |
The reproducibility of research in bioinformatics refers to the notion that new methodologies/ algorithms and scientific claims have to be published together with their data and source code, in a way that other researchers may verify the findings to further build more knowledge upon them. The replication and corroboration of research results are key to the scientific process and many journals are discussing the matter nowadays, taking concrete steps in this direction. In this journal itself, a very recent opinion note has appeared highlighting the increasing importance of this topic in bioinformatics and computational biology, inviting the community to further discuss the matter. In agreement with that article, we would like to propose here another step into that direction with a tool that allows the automatic generation of a web interface, named web-demo, directly from source code in a very simple and straightforward way. We believe this contribution can help make research not only reproducible but also more easily accessible. A web-demo associated to a published paper can accelerate an algorithm validation with real data, wide-spreading its use with just a few clicks. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-01 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/47055 Stegmayer, Georgina; Pividori, Milton Damián; Milone, Diego Humberto; A very simple and fast way to access and validate algorithms in reproducible research; Oxford University Press; Briefings In Bioinformatics; 17; 1; 1-2016; 180-183 1467-5463 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/47055 |
identifier_str_mv |
Stegmayer, Georgina; Pividori, Milton Damián; Milone, Diego Humberto; A very simple and fast way to access and validate algorithms in reproducible research; Oxford University Press; Briefings In Bioinformatics; 17; 1; 1-2016; 180-183 1467-5463 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/http://bib.oxfordjournals.org/content/17/1/180.abstract?etoc info:eu-repo/semantics/altIdentifier/doi/10.1093/bib/bbv054 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Oxford University Press |
publisher.none.fl_str_mv |
Oxford University Press |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
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CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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