A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas

Autores
Alves Lima Rezende, Cássia; Cabanne, Gustavo Sebastián; Rocha, Amanda Vaz; Carboni, Martín Federico; Zink, Robert M.; Caparroz, Renato
Año de publicación
2022
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The main objective of this study was to evaluate biogeographical hypotheses of diversification and connection between isolated savannas north (Amazonian savannas) and south (Cerrado core) of the Amazon River. To achieve this, we used genomic markers (genotyping-by-sequencing) to evaluate the genetic structure, population phylogenetic relationships and historical range shifts of four Neotropical passerines with peri-Atlantic distributions: the narrow-billed woodcreeper (Lepidocolaptes angustirostris), the plain-crested elaenia (Elaenia cristata), the grassland sparrow (Ammodramus humeralis) and the white-banded tanager (Neothraupis fasciata). Population genetic analyses indicated that landscape (e.g., geographic distance, landscape resistance and percentage of tree cover) and climate metrics explained divergence among populations in most species, but without indicating a differential role between current and historical factors. Our results did not fully support the hypothesis that isolated populations in Amazonian savannas have been recently derived from the Cerrado core domain. Intraspecific phylogenies and gene flow analyses supported multiple routes of connection between the Cerrado and Amazonian savannas, rejecting the hypothesis that the Atlantic corridor explains the peri-Atlantic distribution. Our results reveal that the biogeographical history of the region is complex and cannot be explained by simple vicariant models.
Fil: Alves Lima Rezende, Cássia. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina
Fil: Cabanne, Gustavo Sebastián. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina
Fil: Rocha, Amanda Vaz. Universidade do Brasília; Brasil
Fil: Carboni, Martín Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina
Fil: Zink, Robert M.. University of Nebraska; Estados Unidos
Fil: Caparroz, Renato. Universidade do Brasília; Brasil
Materia
AMAZONIA
BIOGEOGRAPHY
CERRADO
LANDSCAPE GENOMICS
PLEISTOCENE CLIMATIC FLUCTUATIONS
SAVANNA CORRIDORS
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/215940
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/215940
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannasAlves Lima Rezende, CássiaCabanne, Gustavo SebastiánRocha, Amanda VazCarboni, Martín FedericoZink, Robert M.Caparroz, RenatoAMAZONIABIOGEOGRAPHYCERRADOLANDSCAPE GENOMICSPLEISTOCENE CLIMATIC FLUCTUATIONSSAVANNA CORRIDORShttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The main objective of this study was to evaluate biogeographical hypotheses of diversification and connection between isolated savannas north (Amazonian savannas) and south (Cerrado core) of the Amazon River. To achieve this, we used genomic markers (genotyping-by-sequencing) to evaluate the genetic structure, population phylogenetic relationships and historical range shifts of four Neotropical passerines with peri-Atlantic distributions: the narrow-billed woodcreeper (Lepidocolaptes angustirostris), the plain-crested elaenia (Elaenia cristata), the grassland sparrow (Ammodramus humeralis) and the white-banded tanager (Neothraupis fasciata). Population genetic analyses indicated that landscape (e.g., geographic distance, landscape resistance and percentage of tree cover) and climate metrics explained divergence among populations in most species, but without indicating a differential role between current and historical factors. Our results did not fully support the hypothesis that isolated populations in Amazonian savannas have been recently derived from the Cerrado core domain. Intraspecific phylogenies and gene flow analyses supported multiple routes of connection between the Cerrado and Amazonian savannas, rejecting the hypothesis that the Atlantic corridor explains the peri-Atlantic distribution. Our results reveal that the biogeographical history of the region is complex and cannot be explained by simple vicariant models.Fil: Alves Lima Rezende, Cássia. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; ArgentinaFil: Cabanne, Gustavo Sebastián. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; ArgentinaFil: Rocha, Amanda Vaz. Universidade do Brasília; BrasilFil: Carboni, Martín Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; ArgentinaFil: Zink, Robert M.. University of Nebraska; Estados UnidosFil: Caparroz, Renato. Universidade do Brasília; BrasilWiley Blackwell Publishing, Inc2022-05info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/215940Alves Lima Rezende, Cássia; Cabanne, Gustavo Sebastián; Rocha, Amanda Vaz; Carboni, Martín Federico; Zink, Robert M.; et al.; A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas; Wiley Blackwell Publishing, Inc; Molecular Ecology; 31; 12; 5-2022; 3451-34670962-1083CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/10.1111/mec.16487info:eu-repo/semantics/altIdentifier/doi/10.1111/mec.16487info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-22T12:09:08Zoai:ri.conicet.gov.ar:11336/215940instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-22 12:09:09.149CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas
title A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas
spellingShingle A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas
Alves Lima Rezende, Cássia
AMAZONIA
BIOGEOGRAPHY
CERRADO
LANDSCAPE GENOMICS
PLEISTOCENE CLIMATIC FLUCTUATIONS
SAVANNA CORRIDORS
title_short A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas
title_full A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas
title_fullStr A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas
title_full_unstemmed A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas
title_sort A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas
dc.creator.none.fl_str_mv Alves Lima Rezende, Cássia
Cabanne, Gustavo Sebastián
Rocha, Amanda Vaz
Carboni, Martín Federico
Zink, Robert M.
Caparroz, Renato
author Alves Lima Rezende, Cássia
author_facet Alves Lima Rezende, Cássia
Cabanne, Gustavo Sebastián
Rocha, Amanda Vaz
Carboni, Martín Federico
Zink, Robert M.
Caparroz, Renato
author_role author
author2 Cabanne, Gustavo Sebastián
Rocha, Amanda Vaz
Carboni, Martín Federico
Zink, Robert M.
Caparroz, Renato
author2_role author
author
author
author
author
dc.subject.none.fl_str_mv AMAZONIA
BIOGEOGRAPHY
CERRADO
LANDSCAPE GENOMICS
PLEISTOCENE CLIMATIC FLUCTUATIONS
SAVANNA CORRIDORS
topic AMAZONIA
BIOGEOGRAPHY
CERRADO
LANDSCAPE GENOMICS
PLEISTOCENE CLIMATIC FLUCTUATIONS
SAVANNA CORRIDORS
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The main objective of this study was to evaluate biogeographical hypotheses of diversification and connection between isolated savannas north (Amazonian savannas) and south (Cerrado core) of the Amazon River. To achieve this, we used genomic markers (genotyping-by-sequencing) to evaluate the genetic structure, population phylogenetic relationships and historical range shifts of four Neotropical passerines with peri-Atlantic distributions: the narrow-billed woodcreeper (Lepidocolaptes angustirostris), the plain-crested elaenia (Elaenia cristata), the grassland sparrow (Ammodramus humeralis) and the white-banded tanager (Neothraupis fasciata). Population genetic analyses indicated that landscape (e.g., geographic distance, landscape resistance and percentage of tree cover) and climate metrics explained divergence among populations in most species, but without indicating a differential role between current and historical factors. Our results did not fully support the hypothesis that isolated populations in Amazonian savannas have been recently derived from the Cerrado core domain. Intraspecific phylogenies and gene flow analyses supported multiple routes of connection between the Cerrado and Amazonian savannas, rejecting the hypothesis that the Atlantic corridor explains the peri-Atlantic distribution. Our results reveal that the biogeographical history of the region is complex and cannot be explained by simple vicariant models.
Fil: Alves Lima Rezende, Cássia. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina
Fil: Cabanne, Gustavo Sebastián. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina
Fil: Rocha, Amanda Vaz. Universidade do Brasília; Brasil
Fil: Carboni, Martín Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Museo Argentino de Ciencias Naturales "Bernardino Rivadavia"; Argentina
Fil: Zink, Robert M.. University of Nebraska; Estados Unidos
Fil: Caparroz, Renato. Universidade do Brasília; Brasil
description The main objective of this study was to evaluate biogeographical hypotheses of diversification and connection between isolated savannas north (Amazonian savannas) and south (Cerrado core) of the Amazon River. To achieve this, we used genomic markers (genotyping-by-sequencing) to evaluate the genetic structure, population phylogenetic relationships and historical range shifts of four Neotropical passerines with peri-Atlantic distributions: the narrow-billed woodcreeper (Lepidocolaptes angustirostris), the plain-crested elaenia (Elaenia cristata), the grassland sparrow (Ammodramus humeralis) and the white-banded tanager (Neothraupis fasciata). Population genetic analyses indicated that landscape (e.g., geographic distance, landscape resistance and percentage of tree cover) and climate metrics explained divergence among populations in most species, but without indicating a differential role between current and historical factors. Our results did not fully support the hypothesis that isolated populations in Amazonian savannas have been recently derived from the Cerrado core domain. Intraspecific phylogenies and gene flow analyses supported multiple routes of connection between the Cerrado and Amazonian savannas, rejecting the hypothesis that the Atlantic corridor explains the peri-Atlantic distribution. Our results reveal that the biogeographical history of the region is complex and cannot be explained by simple vicariant models.
publishDate 2022
dc.date.none.fl_str_mv 2022-05
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/215940
Alves Lima Rezende, Cássia; Cabanne, Gustavo Sebastián; Rocha, Amanda Vaz; Carboni, Martín Federico; Zink, Robert M.; et al.; A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas; Wiley Blackwell Publishing, Inc; Molecular Ecology; 31; 12; 5-2022; 3451-3467
0962-1083
CONICET Digital
CONICET
url http://hdl.handle.net/11336/215940
identifier_str_mv Alves Lima Rezende, Cássia; Cabanne, Gustavo Sebastián; Rocha, Amanda Vaz; Carboni, Martín Federico; Zink, Robert M.; et al.; A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas; Wiley Blackwell Publishing, Inc; Molecular Ecology; 31; 12; 5-2022; 3451-3467
0962-1083
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/10.1111/mec.16487
info:eu-repo/semantics/altIdentifier/doi/10.1111/mec.16487
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Wiley Blackwell Publishing, Inc
publisher.none.fl_str_mv Wiley Blackwell Publishing, Inc
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 12.982451

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